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Dissection of nucleolar silent chromatin structure by proteomics and single- molecule imaging

Research Project

Project/Area Number 15K18580
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Genetics/Chromosome dynamics
Research InstitutionNational Institute of Genetics

Principal Investigator

IDE Satoru  国立遺伝学研究所, 構造遺伝学研究センター, 助教 (50534567)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords核小体 / サイレンシング / RNAポリメラーゼ / 一分子イメージング / rRNA遺伝子 / 液滴 / リボソームRNA遺伝子(rDNA) / 遺伝子サイレンシング / クロマチン
Outline of Final Research Achievements

The RNA polymerase I (Pol I) transcription machinery in the nucleoli is an integral component for ribosome biogenesis, the defect of which is related to human genetic disorders called ribosomopathies. While the structural integrity and mapping of the molecules have previously been revealed, it remains unclear about the dynamics of the molecules reflecting the physical property in vivo. We establish the single-molecule imaging system of Pol I in living cells. Our particle tracking analysis find that the transcription machineries embed in the transcription factories are immobile for efficient transcription. After inducing a new nucleolar silencer,TopBP1, Pol Is are released from the factories, and moves more rapidly by Brownian motion around nucleolar periphery. We propose that the defect of immobility of Pol I anchored to the transcription factory induces the droplet-like self-assembly of Pol I, thereby causing the perturbation of ribosome biogenesis in the human genetic disorder.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (6 results)

All 2017 2016 2015

All Presentation (5 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Book (1 results)

  • [Presentation] 分子の動態から見えてきた転写装置と鋳型DNAが織り成す形2017

    • Author(s)
      井手聖
    • Organizer
      転写研究会・冬の若手ワークショップ2017
    • Place of Presentation
      千葉県一宮シーサイドオーツカ
    • Year and Date
      2017-01-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] 核小体クロマチンの動態と形態2016

    • Author(s)
      井手聖
    • Organizer
      遺伝研研究会「クロマチン・細胞核の動的構造変換とエピジェネティック制御」
    • Place of Presentation
      国立遺伝学研究所
    • Year and Date
      2016-10-27
    • Related Report
      2016 Annual Research Report
  • [Presentation] rRNA遺伝子上での包括的なDNA-タンパク相互作用情報が照らし出す 新たな転写制御2016

    • Author(s)
      井手 聖
    • Organizer
      転写研究会、冬の若手ワークショップ2016
    • Place of Presentation
      山中湖ホテル清渓
    • Year and Date
      2016-02-04
    • Related Report
      2015 Research-status Report
  • [Presentation] A method to dissect protein composition on regulatory DNA sequence and the future2015

    • Author(s)
      井手 聖
    • Organizer
      第38回分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Transcription regulation of mammalian ribosomal RNA gene revealed by proteomic analysis for local chromatin configuration2015

    • Author(s)
      井手 聖
    • Organizer
      International Symposium on Chromatin Structure, Dynamics, and Function
    • Place of Presentation
      淡路夢舞台
    • Year and Date
      2015-08-23
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Book] 実験医学別冊「エピジェネティクス実験スタンダード」2017

    • Author(s)
      井手聖、牛島俊和、眞貝洋一、塩見春彦
    • Total Pages
      398
    • Publisher
      羊土社
    • Related Report
      2016 Annual Research Report

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Published: 2015-04-16   Modified: 2018-12-17  

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