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NGS studies towards the isolation of genes responsible for the loss of the shoot apical meristem during plant evolution

Research Project

Project/Area Number 15K18593
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biodiversity/Systematics
Research InstitutionTokyo Gakugei University

Principal Investigator

NISHII Kanae  東京学芸大学, 教育学部, 研究員 (50743770)

Research Collaborator IWAMOTO Akitoshi  東京学芸大学, 教育学部, 准教授
NAGANO Atsushi  龍谷大学, 農学部, 講師
MÖLLER Michael  Royal Botanic Garden Edinburgh, Senior scientific officer
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords茎頂分裂組織 / 葉発生 / 次世代シーケンス / ゲノムシーケンス / トランスクリプトーム / イワタバコ科 / ストレプトカルプス属 / RADシーケンス / 次世代シーケンサー解析 / 遺伝子マップ / 個体発生 / 国際情報交換 / イギリス
Outline of Final Research Achievements

The majority of rosulate Streptocarpus (Gesneriaceae) species initiate leaves from the petiolode and form a false rosette (excentric rosulates). On the other hand, some rosulates show centralized phyllotaxy (centric rosulates). To understand the leaf formation and related meristem activities, we investigate the underlying morphogenesis and genetic mechanisms.
The results of morphological analyses showed that a shoot apical meristem (SAM) is present in centric rosulates while excentric rosulates do not retain a SAM. Further, genetic resources were built for the non-model plant Streptocarpus using state-of the art NGS techniques: genome sequence data were obtained with DNAseq, transcriptome sequences were obtained with RNAseq, and genotype information to build the genetic map was obtained with RADseq. The obtained genetic resources provide the bases to start genetic analyses to isolate the genes regulating the shoot apical meristem formation and its evolution in the genus Streptocarpus.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (28 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (9 results) Journal Article (6 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 6 results,  Acknowledgement Compliant: 3 results,  Open Access: 1 results) Presentation (7 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Remarks (6 results)

  • [Int'l Joint Research] Royal Botanic Garden Edinburgh/University of Edinburgh/Biomathematics and Statistics Scotland(英国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] National Taiwan University/National Taiwan Normal University(台湾)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Milan University(イタリア)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Royal Botanic Garden Edinburgh/The University of Edinburgh/Biomathematics & Statistics Scotland(英国)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] The University of Milan(イタリア)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] 國立台湾大学(台湾)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Royal Botanic Garden Edinburgh/The University of Edinburgh/Biomathematics & Statistics Scotland(英国)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] The University of Milan(イタリア)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] 國立台湾大学(台湾)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Cytokinin biosynthesis ISOPENTENYLTRANSFERASE genes are differentially expressed during phyllomorph development in the acaulescent Streptocarpus rexii (Gesneriaceae)2017

    • Author(s)
      Chen Y.-Y.、Nishii K.、Spada A.、Wang C.-N.、Sakakibara H.、Kojima M.、Wright F.、MacKenzie K.、Moeller M.
    • Journal Title

      South African Journal of Botany

      Volume: 109 Pages: 96-111

    • DOI

      10.1016/j.sajb.2016.12.010

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] From shoot to leaf: step-wise shifts in meristem and KNOX1 activity correlate with the evolution of unifoliate body plan in Gesneriaceae2017

    • Author(s)
      Kanae Nishii, Bing-Hong Huang, Chun-Neng Wang, Michael Moeller
    • Journal Title

      Development, Genes and Evolution

      Volume: 227 Issue: 1 Pages: 41-60

    • DOI

      10.1007/s00427-016-0568-x

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Streptocarpus redefined to include all Afro-Malagasy Gesneriaceae: Molecular phylogenies prove congruent with geography and cytology and uncovers remarkable morphological homoplasies2015

    • Author(s)
      Kanae Nishii, Mark Hughes, Marie Briggs, Elspeth Haston, Frieda Christie, Margaret J. DeVilliers, Thea Hanekom, Wiets G. Roos, Dirk U. Bellstedt, Michael Moeller
    • Journal Title

      Taxon

      Volume: 64 Issue: 6 Pages: 1243-1274

    • DOI

      10.12705/646.8

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Rearranging specimens on herbarium type sheets of Streptocarpus betsiliensis Humbert (Gesneriaceae)2015

    • Author(s)
      Michael Moeller, Kanae Nishii, Martin W. Callmander, Peter B. Phillipson, Odile Poncy
    • Journal Title

      Candollea

      Volume: 70 Issue: 1 Pages: 145-150

    • DOI

      10.15553/c2015v701a12

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The European paleoendemic Harberlea rhodopensis (Gesneriaceae) has an oligocene origiin and a pleistocene diversification and occurs in a long-persisting refugial area in southeastern Europe2015

    • Author(s)
      Galya Petrova, Daniela Moyankova, Kanae Nishii, Laura Forrest, Ioannis Tsiripidis, Andreas D. Drouzas, Dimiter Djilianov, Michael Moeller
    • Journal Title

      International Journal of Plant Sciences

      Volume: 176 Pages: 499-514

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Chayamaritia (Gesneriaceae: Didymocarpoideae), a new genus from Southeast Asia2015

    • Author(s)
      David J. Middleton, Kanae Nishii, Carmen Puglisi, Laura Forrest, Michael Moeller
    • Journal Title

      Plant Systematics and Evolution

      Volume: 301 Issue: 7 Pages: 1947-1966

    • DOI

      10.1007/s00606-015-1213-2

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Recent progress in one-leaf plant studies; searching for meristem regulatory factors in their genomes2018

    • Author(s)
      西井かなえ, Yun-Yu Chen, Michael Moeller
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Early Cotyledonary meristem activity and STM expression appears to be ancestral in Lamiales and has diversified in Gesneriaceae2017

    • Author(s)
      Kanae Nishii, Bing-Hong Huang, Chun-Neng Wang, Michael Moeller
    • Organizer
      Taiwan-Japan Plant Biology 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Differential expression of cytokinin biosynthesis IPT genes in non-model Cape Primrose plants2017

    • Author(s)
      Yun-Yu Chen, Kanae Nishii, Chun-Neng Wang, Alberto Spada, Hitoshi Sakakibara, Kojima Mikiko, Michael Moeller
    • Organizer
      Taiwan-Japan Plant Biology 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 茎頂分裂組織を欠失したストレプトカルプス属における分子進化機構解明に向けたゲノム資源の整備2017

    • Author(s)
      西井かなえ, Chen Yun-Yu, Barber Sadie, 岩元明敏、Moeller Michael
    • Organizer
      日本植物学会第81回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Applying Nest Generation Sequencing for building map using RAD-seq genotyping and draft genome assembly2017

    • Author(s)
      Chen Yun-Yu, 西井かなえ, Barber Sadie, Hackett Christine, Kidner Catherine, Gharbi Karim, Nagano Atsushi, 岩元明敏、Moeller Michael
    • Organizer
      日本植物学会第81回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Isocotylous and anisocotylous Gesneriaceae share the meristem activity in lateral organs2016

    • Author(s)
      西井かなえ、Bing-Hong Huang、Chun-Neng Wang、Michael Moeller
    • Organizer
      日本植物学会
    • Place of Presentation
      沖縄コンベンションセンター(沖縄県・宜野湾市)
    • Year and Date
      2016-09-16
    • Related Report
      2016 Research-status Report
  • [Presentation] Expression study of ISOPENTENYLTRANSFERASE genes in the rosulate Streptocarpus rexii in the light of the evolution of the cytokinin biosynthesis multigene family2016

    • Author(s)
      Kanae Nishii, Yun-yu Chen, Frank Wright, Katrin Mackenzie, Alberto Spada, Chun-Neng Wang, Michael Moeller
    • Organizer
      日本植物生理学会
    • Place of Presentation
      盛岡・岩手大学
    • Year and Date
      2016-03-18
    • Related Report
      2015 Research-status Report
  • [Remarks] Royal Botanic Garden Edinburgh, Science webpage

    • URL

      http://www.rbge.org.uk/science/home

    • Related Report
      2016 Research-status Report 2015 Research-status Report
  • [Remarks] The University of Milan webpage

    • URL

      http://www.unimi.it/default.htm

    • Related Report
      2016 Research-status Report 2015 Research-status Report
  • [Remarks] Biomathematics & Statistics Scotland webpage

    • URL

      http://www.bioss.ac.uk/

    • Related Report
      2016 Research-status Report 2015 Research-status Report
  • [Remarks] 國立台湾大学CN Wang研究室

    • URL

      http://ecology.ntu.edu.tw/faculty/wang=cn.htm

    • Related Report
      2016 Research-status Report
  • [Remarks] The University of Edinburgh, A Hudson研究室

    • URL

      http://hudson.bio.ed.ac.uk/

    • Related Report
      2015 Research-status Report
  • [Remarks] 國立台湾大学CN Wang研究室

    • URL

      http://ecology.lifescience.ntu.edu.tw/faculty/wang_cn.htm

    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2022-08-18  

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