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Identification and characterization of gene controlling root growth angle in rice.

Research Project

Project/Area Number 15K18630
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Science in genetics and breeding
Research InstitutionNational Agriculture and Food Research Organization (2017)
The University of Tokyo (2015-2016)

Principal Investigator

KITOMI Yuka  国立研究開発法人農業・食品産業技術総合研究機構, 次世代作物開発研究センター, 契約研究員 (70746502)

Research Collaborator UGA Yusaku  国立研究開発法人農業・食品産業技術総合研究機構, 次世代作物開発研究センター, 上級研究員 (00391566)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2017: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywordsイネ / 根伸長角度 / QTL
Outline of Final Research Achievements

Deep root system is important trait to get unevenly-located water in the deeper soil layer in drought condition. To improve the ability of drought avoidance in crops by modifying root system architecture, we studied on newly identified QTLs, qSOR1 and DRO3, which control root growth angle in rice. We succeeded in isolation of qSOR1 gene and demonstration of qSOR1 expression levels and patterns in several tissues. qSOR1 works in auxin signaling pathway same as known root growth angle control gene DRO1, on the other hand, they regulate root growth angle independently. Fine mapping of DRO3 gene was also performed in this project. However, we could not narrow down the candidate region of DRO3 due to the other QTL(s) having opposite effect to DRO3 located near DRO3.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (15 results)

All 2018 2017 2016 2015

All Journal Article (7 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 7 results,  Open Access: 7 results) Presentation (7 results) (of which Invited: 1 results) Book (1 results)

  • [Journal Article] Genomic regions responsible for seminal and crown root lengths identified by 2D & 3D root system image analysis.2018

    • Author(s)
      Yusaku Uga, Ithipong Assaranurak, Yuka Kitomi, Brandon G. Larson, Eric J. Craft, Jon E. Shaff, Susan R. McCouch and Leon V. Kochian
    • Journal Title

      BMC Genomics

      Volume: 19 Issue: 1 Pages: 273-273

    • DOI

      10.1186/s12864-018-4639-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Fine mapping of QUICK ROOTING 1 and 2, quantitative trait loci increasing root length in rice.2017

    • Author(s)
      Yuka Kitomi, Emari Nakao, Sawako Kawai, Noriko Kanno, Tsuyu Ando, Shuichi Fukuoka, Kenji Irie and Yusaku Uga
    • Journal Title

      G3-Genes Genomes Genetics

      Volume: 8 Issue: 2 Pages: 727-735

    • DOI

      10.1534/g3.117.300147

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Jasmonate regulates juvenile-adult phase transition in rice.2016

    • Author(s)
      Hibara, K., Isono, M., Mimura, M., Sentoku, N., Kojima, M., Sakakibara, H., Kitomi, Y., Yoshikawa, T., Itoh, J., and Nagato, Y.
    • Journal Title

      Development

      Volume: 143 Pages: 3407-3416

    • DOI

      10.1242/dev.138602

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 作物生産における根伸長角度の遺伝的改良.2016

    • Author(s)
      宇賀優作・木富悠花.
    • Journal Title

      植物科学最前線 (BSJ-Review)

      Volume: 7 Pages: 250-263

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A QTL for root growth angle on rice chromosome 7 is involved in the genetic pathway of DEEPER ROOTING 1.2015

    • Author(s)
      Yusaku Uga, Yuka Kitomi, Eiji Yamamoto, Noriko Kanno, Sawako Kawai, Tatsumi Mizubayashi and Shuichi Fukuoka
    • Journal Title

      Rice

      Volume: 8 Issue: 1 Pages: 8-8

    • DOI

      10.1186/s12284-015-0044-7

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] QTLs underlying natural variation of root growth angle among rice cultivars with the same functional allele of DEEPER ROOTING 1.2015

    • Author(s)
      Yuka Kitomi, Noriko Kanno, Sawako Kawai, Tatsumi Mizubayashi, Shuichi Fukuoka and Yusaku Uga
    • Journal Title

      Rice

      Volume: 8 Issue: 1 Pages: 16-16

    • DOI

      10.1186/s12284-015-0049-2

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic improvement for root growth angle to enhance crop production2015

    • Author(s)
      Yusaku Uga, Yuka Kitomi, Satoru Ishikawa and Masahiro Yano
    • Journal Title

      Breeding Science

      Volume: 65 Issue: 2 Pages: 111-119

    • DOI

      10.1270/jsbbs.65.111

    • NAID

      130005068211

    • ISSN
      1344-7610, 1347-3735
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 深根型DRO1の導入がイネ浅根型CSSLsの収量形質に及ぼす影響2018

    • Author(s)
      木富悠花,荒井(三王)裕見子,岡村昌樹,宇賀優作
    • Organizer
      日本育種学会第133回講演会
    • Related Report
      2017 Annual Research Report
  • [Presentation] イネ第2および第6染色体上に見出された根長に関与する新奇QTLsのファインマッピング2017

    • Author(s)
      木富悠花・中尾絵真理・河合佐和子・菅野徳子・安藤露・福岡修一・入江憲治・宇賀優作.
    • Organizer
      日本育種学会第131回講演会
    • Place of Presentation
      名古屋大学東山キャンパス(愛知県 名古屋市)
    • Year and Date
      2017-03-29
    • Related Report
      2016 Research-status Report
  • [Presentation] イネ第2および第6染色体上に同定した根長QTL、QUICK ROOTING 1 & 22017

    • Author(s)
      木富悠花,中尾絵真理,河合佐和子,菅野徳子,安藤露,福岡修一,入江憲治,宇賀優作
    • Organizer
      第46回根研究集会
    • Related Report
      2017 Annual Research Report
  • [Presentation] イネの根伸長角度を制御する新奇なQTL、qSOR1の単離2016

    • Author(s)
      木富悠花・半澤栄子・河合佐和子・菅野徳子・藤澤弘子・金森裕之・呉健忠・佐藤雅志・宇賀優作.
    • Organizer
      日本育種学第130回講演会
    • Place of Presentation
      鳥取大学鳥取キャンパス(鳥取県 鳥取市)
    • Year and Date
      2016-09-24
    • Related Report
      2016 Research-status Report
  • [Presentation] 栽培イネの有用変異発掘を促進する12種類の染色体断片置換系統群の作出2015

    • Author(s)
      永田和史, 木富悠花, 他35名
    • Organizer
      日本育種学会第128回講演会
    • Place of Presentation
      新潟大学五十嵐キャンパス (新潟県新潟市)
    • Year and Date
      2015-09-30
    • Related Report
      2015 Research-status Report
  • [Presentation] 干ばつ耐性向上をめざした根型育種の有効性と今後の展望2015

    • Author(s)
      宇賀優作, 木富悠花
    • Organizer
      第43回根研究集会特別シンポジウム
    • Place of Presentation
      東京農業大学厚木キャンパス (神奈川県厚木市)
    • Year and Date
      2015-09-30
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 2D&3D画像解析によるイネ第1染色体の根系発達に関与するゲノム領域の発見2015

    • Author(s)
      宇賀優作, Assaranurak I., Larson B.G., Craft E.J., Shaff J.E., 木富悠花, McCouch S.R., Kochian L.V.
    • Organizer
      日本育種学会第128回講演会
    • Place of Presentation
      新潟大学五十嵐キャンパス (新潟県新潟市)
    • Year and Date
      2015-09-11
    • Related Report
      2015 Research-status Report
  • [Book] Rice Genomics, Genetics and Breeding (Genetic Mechanisms Involved in the Formation of Root System Architecture.)2018

    • Author(s)
      Yuka Kitomi, Jun-Ichi Itoh and Yusaku Uga (eds: Takuji Sasaki and Motoyuki Ashikari)
    • Total Pages
      558
    • Publisher
      Springer Nature
    • ISBN
      9789811074608
    • Related Report
      2017 Annual Research Report

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Published: 2015-04-16   Modified: 2019-03-29  

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