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Structural and functional analysis of acyltransferase that possesses a unique substrate specificity

Research Project

Project/Area Number 15K18679
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied biochemistry
Research InstitutionTokyo Institute of Technology

Principal Investigator

Miyanaga Akimasa  東京工業大学, 理学院, 助教 (10623126)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2015: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords微生物酵素 / 結晶構造解析 / ポリケタイド合成酵素 / アシル基転移酵素 / タンパク質間相互作用 / クロスリンク / アシルキャリアータンパク質
Outline of Final Research Achievements

Acyltransferases are key determinants of building block specificity in polyketide biosynthesis. Despite the importance of protein-protein interactions between acyltransferase and acyl carrier protein (ACP) during the acyltransfer reaction, the mechanism of ACP recognition by acyltransferase had not been understood in detail. An acyltransferase VinK transfers a dipeptide group between two ACPs, VinL and VinP1LdACP, in vicenistatin biosynthesis. In this study, we attempted to crystallize the VinK-ACP complexes. Because transient enzyme-ACP complexes are difficult to crystallize, we developed a covalent cross-linking strategy to trap the VinK-ACP complexes, allowing the determination of the crystal structure of the VinK-VinL complex. The VinK-VinL complex structure allows the first visualization of the interaction between acyltransferase and ACP and provides detailed mechanistic insights into ACP recognition by acyltransferase.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (11 results)

All 2017 2016 2015

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Acknowledgement Compliant: 2 results) Presentation (7 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results)

  • [Journal Article] Mechanisms of β-Amino Acid incorporation in Polyketide Macrolactam Biosynthesis.2016

    • Author(s)
      Miyanaga, A., Kudo, F., and Eguchi, T.
    • Journal Title

      Curr. Opin. Chem. Biol.

      Volume: 35 Pages: 58-64

    • DOI

      10.1016/j.cbpa.2016.08.030

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 天然物生合成酵素によるキャリアータンパク質の認識機構2016

    • Author(s)
      宮永顕正、工藤史貴、江口正
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 74 Pages: 382-387

    • NAID

      40020960033

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of the Fluvirucin B2 (Sch 38518) Biosynthetic Gene Cluster from Actinomadula fulva subsp. indica ATCC 53714: Substrate Specificity of β-amino Acid Selective Adenylating Enzyme FlvN.2016

    • Author(s)
      Miyanaga, A., Hayakawa, Y., Numakura, M., Hashimoto, J., Teruya,K., Hirano, T., Shin-ya, K., Kudo, F., Eguchi, T.
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 80 Issue: 5 Pages: 902-910

    • DOI

      10.1080/09168451.2015.1132155

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure-based analysis of the molecular interactions between acyltransferase and acyl carrier protein in vicenistatin biosynthesis.2016

    • Author(s)
      Miyanaga, A., Iwasawa, S., Shinohara, Y., Kudo, F., and Eguchi, T.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 113 Issue: 7 Pages: 1802-1807

    • DOI

      10.1073/pnas.1520042113

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Structural analysis of vicenistatin biosynthetic enzymes for elucidating the β-amino acid incorporation mechanism2017

    • Author(s)
      Miyanaga, A., Kudo, F., and Eguchi, T.
    • Organizer
      Directing Biosynthesis V
    • Place of Presentation
      イギリス
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ポリケタイド化合物の分子多様性を生み出す生合成酵素の構造機能研究2017

    • Author(s)
      宮永顕正
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都女子大学 (京都)
    • Related Report
      2016 Annual Research Report
  • [Presentation] Structural analysis of macrolactam biosynthetic enzymes2017

    • Author(s)
      Miyanaga, A.
    • Organizer
      2nd US-Japan Seminar on the Biosynthesis of Natural Products for Young Researchers
    • Place of Presentation
      東京工業大学 (東京)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ポリケタイド生合成酵素の構造機能解析2016

    • Author(s)
      宮永顕正、工藤史貴、江口正
    • Organizer
      日本農芸化学会2016年度大会シンポジウム
    • Place of Presentation
      札幌コンベンションセンター (札幌)
    • Year and Date
      2016-03-30
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] ポリケタイド生合成におけるアシルキャリアータンパク質認識機構2016

    • Author(s)
      宮永顕正、工藤史貴、江口正
    • Organizer
      第60回日本薬学会関東支部大会
    • Place of Presentation
      東京大学 (東京)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] マクロラクタム抗生物質ビセニスタチン生合成に関わるアシル基転移酵素VinKの基質認識機構解析2015

    • Author(s)
      岩沢翔平、宮永顕正、篠原雄治、工藤史貴、江口正
    • Organizer
      第5回CSJ化学フェスタ2015
    • Place of Presentation
      タワーホール船堀 (東京)
    • Year and Date
      2015-10-15
    • Related Report
      2015 Research-status Report
  • [Presentation] マクロラクタム抗生物質ビセニスタチン生合成酵素の構造機能解析に基づくβ-アミノ酸スターター部位構築機構の解明2015

    • Author(s)
      宮永顕正、篠原雄治、岩沢翔平、Jolanta Cieslak、工藤史貴、江口正
    • Organizer
      第57回天然有機化合物討論会
    • Place of Presentation
      神奈川県民ホール (横浜)
    • Year and Date
      2015-09-11
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2018-03-22  

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