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Evaluating phylogenetic lineages of Larix gmelinii var. japonica (Chishima-, or Karafuto-type) and their availabilities for Larix breeding

Research Project

Project/Area Number 15K18715
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Forest science
Research InstitutionHokkaido Research Organization

Principal Investigator

Ishizuka Wataru  地方独立行政法人北海道立総合研究機構, 森林研究本部林業試験場, 研究主任 (80739508)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2017: ¥260,000 (Direct Cost: ¥200,000、Indirect Cost: ¥60,000)
Fiscal Year 2016: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords遺伝解析 / ゲノム解析 / 葉緑体 / 系統地理 / 林木育種 / カラマツ属 / 葉緑体ゲノム / ゲノム比較 / 分子系統 / Larix gmelinii / グイマツ / 全ゲノム比較 / フェノロジー / カラマツ類 / 分画法 / 塩基配列解読 / 系統
Outline of Final Research Achievements

Larix gmelinii var. japonica is one of the major introduced coniferous species in Hokkaido, Japan, although the genetic origin of this species remains unknown. We searched for the origin and history of the specific families of Larix gmelinii var. japonica that were used in breeding programs, and evaluated the phylogenetic lineage.
This study successfully made the catalog of Larix gmelinii var. japonica that contained information of genetic resources for all of the breeding families and determined the draft chloroplast genome of this species. The cpDNA-wide comparisons among species and among Larix genus also found that the two genetic lineages were not consistent with the previously assumed lineages, and the proportion of the families was uneven among lineages. These insights would be informative for future breeding programs of L. gmelinii.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (7 results)

All 2017 2016 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) Remarks (1 results)

  • [Journal Article] Draft chloroplast genome of Larix gmelinii var. japonica: insight into intraspecific divergence2017

    • Author(s)
      Ishizuka W., Tabata A., Ono K., Fukuda Y., and Hara T.
    • Journal Title

      Journal of Forest Research

      Volume: 22 Issue: 6 Pages: 393-399

    • DOI

      10.1080/13416979.2017.1386019

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 北海道内のグイマツの遺伝資源情報2017

    • Author(s)
      石塚航
    • Journal Title

      北海道林業試験場研究報告

      Volume: 54 Pages: 23-29

    • NAID

      40021282374

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 地理的隔離する北方樹木グイマツ2系統の復元―ゲノム情報を用いて2017

    • Author(s)
      石塚航・田畑あずさ・小野清美・福田陽子・原登志彦
    • Organizer
      第64回 日本生態学会大会
    • Place of Presentation
      早稲田大学
    • Year and Date
      2017-03-14
    • Related Report
      2016 Research-status Report
  • [Presentation] グイマツ育種材料の系統評価ー葉緑体全ゲノム情報を用いてー2017

    • Author(s)
      石塚 航・田畑あずさ・小野清美・福田陽子・原 登志彦
    • Organizer
      森林遺伝育種学会第6回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 適応進化を考慮した林業の展開と挑戦(シンポジウム「進化を考慮した応用生態学の展開:理論と実践」)2017

    • Author(s)
      石塚 航
    • Organizer
      第65回 日本生態学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] グイマツ葉緑体の完全長ゲノム配列の解読と構造変異の推定2016

    • Author(s)
      石塚航・田畑あずさ・小野清美・福田陽子・原登志彦
    • Organizer
      森林遺伝育種学会第5回大会
    • Place of Presentation
      東京大学
    • Related Report
      2016 Research-status Report
  • [Remarks] 精英樹選抜に向けた形質の測定と評価

    • URL

      http://sites.google.com/site/ishizukawebsite/home/archive/plustree

    • Related Report
      2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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