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Structural basis of biased signaling mediated by pharmacologically important GPCRs

Research Project

Project/Area Number 15K18843
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Physical pharmacy
Research InstitutionThe University of Tokyo

Principal Investigator

KOFUKU Yutaka  東京大学, 大学院薬学系研究科(薬学部), 特任助教 (80737940)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords構造生物学 / NMR / 膜タンパク質 / シグナル伝達 / GPCR
Outline of Final Research Achievements

G-protein-coupled receptor (GPCR) ligands impart differing degrees of signaling in the G-protein and arrestin pathways, in phenomena called "biased signaling". However, the mechanism underlying the biased signaling of GPCRs is still unclear, although crystal structures of GPCRs bound to the G protein or arrestin are available. In this study, we observed the NMR signals from methionine residues of pharmacologically important GPCRs in the balanced- and biased-ligand-bound states. We found that the intracellular cavity of GPCRs exist in an equilibrium between closed and multiple open conformations, and that the population of each open conformation determines the G-protein- and arrestin-mediated signaling levels in each ligand-bound state.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (20 results)

All 2017 2016 2015 Other

All Journal Article (5 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 5 results,  Open Access: 5 results,  Acknowledgement Compliant: 1 results) Presentation (14 results) (of which Int'l Joint Research: 6 results,  Invited: 4 results) Remarks (1 results)

  • [Journal Article] Conductance of P2X4 receptor is determined by conformational equilibrium in the transmembrane region2016

    • Author(s)
      Minato Y, Suzuki S , Hara T, Kofuku Y, Kasuya G, Fujiwara Y, Igarashi S, Suzuki E, Nureki O, Hattori M, Ueda T, Shimada I
    • Journal Title

      Proc. Natl. Acad. Sci.

      Volume: 発行中 Issue: 17 Pages: 4741-4746

    • DOI

      10.1073/pnas.1600519113

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Utilization of paramagnetic relaxation enhancements for structural analysis of actin-binding proteins in complex with actin.2016

    • Author(s)
      Huang S, Umemoto R, Tamura Y, Kofuku Y, Uyeda TQP, Nishida N, Shimada I
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 33690-33690

    • DOI

      10.1038/srep33690

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of a Conformational Equilibrium That Determines the Efficacy and Functional Selectivity of the μ-Opioid Receptor.2015

    • Author(s)
      Junya Okude, Takumi Ueda, Yutaka Kofuku, Motohiko Sato, Naoyuki Nobuyama, Keita Kondo, Yutaro Shiraishi, Takuya Mizumura, Kento Onishi, Mei Natsume, Masahiro Maeda, Hideki Tsujishita, Takefumi Kuranaga, Masayuki Inoue, Ichio Shimada
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 21 Issue: 52 Pages: 15771-15776

    • DOI

      10.1002/anie.201508794

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Elucidation of the CCR1- and CCR5-binding modes of MIP-1α by application of an NMR spectra reconstruction method to the transferred cross-saturation experiments.2015

    • Author(s)
      Chie Yoshiura, Takumi Ueda, Yutaka Kofuku, Masahiko Matsumoto, Junya Okude, Keita Kondo, Yutaro Shiraishi, Ichio Shimada
    • Journal Title

      Journal of Biomolecular NMR

      Volume: 63 Issue: 4 Pages: 333-340

    • DOI

      10.1007/s10858-015-9992-x

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of a method for reconstruction of crowded NMR spectra from undersampled time-domain data2015

    • Author(s)
      Ueda T, Yoshiura C, Matsumoto M, Kofuku Y, Okude J, Kondo K, Shiraishi Y, Takeuchi K, Shimada I
    • Journal Title

      J. Biomol. NMR

      Volume: 印刷中 Issue: 1 Pages: 31-41

    • DOI

      10.1007/s10858-015-9908-9

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 細胞遊走因子、ケモカイン受容体の動的構造研究と創薬研究への展望2017

    • Author(s)
      幸福 裕
    • Organizer
      第87回日本衛生学会学術総会
    • Place of Presentation
      シーガイアコンベンションセンター(宮崎県宮崎市)
    • Year and Date
      2017-03-26
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Conductance of P2X4 purinergic receptor is determined by conformational equilibrium in the transmembrane region2017

    • Author(s)
      Takumi Ueda, Tomoaki Hara, Yuichi Minato, Shiho Suzuki, Yutaka Kofuku, Go Kasuya, Yuichiro Fujiwara, Shunsuke Igarashi, Ei-ichiro Suzuki, Osamu Nureki, Motoyuki Hattori, Ichio Shimada
    • Organizer
      58th Experimental Nuclear Magnetic Resonance Conference
    • Place of Presentation
      Pacific Grove(アメリカ合衆国)
    • Year and Date
      2017-03-26
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Identification of a Conformational Equilibrium That Determines the Efficacy and Functional Selectivity of the μ-Opioid Receptor2017

    • Author(s)
      Yutaro Shiraishi, Junya Okude, Takumi Ueda, Yutaka Kofuku, Motohiko Sato, Naoyuki Nobuyama, Keita Kondo, Takuya Mizumura, Mei Natsume, Masahiro Maeda, Hideki Tsujishita, Takefumi Kuranaga, Masayuki Inoue, Ichio Shimada
    • Organizer
      58th Experimental Nuclear Magnetic Resonance Conference
    • Place of Presentation
      Pacific Grove(アメリカ合衆国)
    • Year and Date
      2017-03-26
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Functional dynamics of deuterated β2-adrenergic receptor in lipid bilayers revealed by NMR spectroscopy2017

    • Author(s)
      Mei Natsume, Yutaka Kofuku, Takumi Ueda, Junya Okude, Yutaro Shiraishi, Keita Kondo, Takuya Mizumura, Shiho Suzuki, Ichio Shimada
    • Organizer
      58th Experimental Nuclear Magnetic Resonance Conference
    • Place of Presentation
      Pacific Grove(アメリカ合衆国)
    • Year and Date
      2017-03-26
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 昆虫細胞発現系における高度重水素標識を用いた脂質二重膜中のGタンパク質共役型受容体の動的構造解析2016

    • Author(s)
      幸福 裕、上田 卓見、奥出 順也、白石 勇太郎、近藤 啓太、水村 拓也、鈴木 志歩、嶋田 一夫
    • Organizer
      第55回NMR討論会
    • Place of Presentation
      広島国際会議場(広島県広島市)
    • Year and Date
      2016-11-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] Identification of a Conformational Equilibrium That Determines the Efficacy and Functional Selectivity of the μ-Opioid Receptor2016

    • Author(s)
      Junya Okude, Takumi Ueda, Yutaka Kofuku, Motohiko Sato, Naoyuki Nobuyama, Keita Kondo, Yutaro Shiraishi, Takuya Mizumura, Mei Natsume, Masahiro Maeda, Hideki Tsujishita, Takefumi Kuranaga, Masayuki Inoue, Ichio Shimada
    • Organizer
      XXVIIth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2016-08-21
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of an NMR reconstruction method to elucidate the CCR1- and CCR5-bincing modes of MIP-1a2016

    • Author(s)
      Takumi Ueda, Chie Yoshiura, Yutaka Kofuku, Masahiko Matsumoto, Junya Okude, Keita Kondo, Yutaro Shiraishi, Koh Takeuchi, Ichio Shimada
    • Organizer
      XXVIIth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2016-08-21
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Conductance of P2X4 purinergic receptor is determined by conformational equilibrium in the transmembrane region2016

    • Author(s)
      Tomoaki Hara, Yuichi Minato, Shiho Suzuki, Yutaka Kofuku, Go Kasuya, Yuichiro Fujiwara, Shunsuke Igarashi, Ei-ichiro Suzuki, Osamu Nureki, Motoyuki Hattori, Takumi Ueda, Ichio Shimada
    • Organizer
      XXVIIth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2016-08-21
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] δオピオイド受容体(δOR)の活性制御機構の解明2016

    • Author(s)
      佐藤 元彦、奥出 順也、延山 尚幸、上田 卓見、幸福 裕、倉永 健史、井上 将行、嶋田 一夫
    • Organizer
      日本薬学会第136年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-03-26
    • Related Report
      2015 Research-status Report
  • [Presentation] SDF-1との二段階結合によるCXCR4のシグナル伝達機構の解明2016

    • Author(s)
      大西 健人、幸福 裕、塚本 宇信、鈴木 志歩、上田 卓見、嶋田 一夫
    • Organizer
      日本薬学会第136年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-03-26
    • Related Report
      2015 Research-status Report
  • [Presentation] NMR法を用いた脂質二重膜中のGPCRの動的構造解析2015

    • Author(s)
      幸福 裕、上田 卓見、奥出 順也、白石 勇太郎、近藤 啓太、鈴木 志歩、嶋田 一夫
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学 角間キャンパス 自然科学本館(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] リガンドとの相互作用に伴う膜蛋白質の動的立体構造変化2015

    • Author(s)
      上田 卓見、幸福 裕、嶋田 一夫
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学 角間キャンパス 自然科学本館(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 区分同位体標識を用いたβ2-アドレナリン受容体のリン酸化のNMR解析2015

    • Author(s)
      白石 勇太郎、幸福 裕、上田 卓見、夏目 芽衣、岩井 秀夫、嶋田 一夫
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学 角間キャンパス 自然科学本館(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
  • [Presentation] 脂質によるGPCRの活性制御機構の解明2015

    • Author(s)
      水村 拓也、近藤 啓太、上田 卓見、幸福 裕、嶋田 一夫
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学 角間キャンパス 自然科学本館(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
  • [Remarks] 東京大学大学院薬学系研究科生命物理化学教室ホームページ

    • URL

      http://ishimada.f.u-tokyo.ac.jp/public_html/index_j.html

    • Related Report
      2016 Annual Research Report 2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2018-03-22  

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