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Whole genome analysis of ESBL-producing E. coli ST131 clone and definition of its responsible subclone

Research Project

Project/Area Number 15K19179
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Laboratory medicine
Research InstitutionKyoto University

Principal Investigator

Yasufumi Matsumura  京都大学, 医学研究科, 助教 (80726828)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2016: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2015: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords全ゲノム解析 / 薬剤耐性菌 / クローン / クローン同定 / 世界流行型クローン / パンデミッククローン
Outline of Final Research Achievements

Escherichia coli is one of the most common pathogen in humans. Recent increase in drug-resistant E. coli is an emerging public health threat and is driven by clonal spread of a specific bacterial lineage with drug resistant mechanisms, called ST131. We performed whole genome sequencing analysis of ESBL-producing E. coli collected from multiple Japanese acute care hospitals. CTX-M-27-producing ST131, the most common type in Japan belonged to a novel subclone and was also present outside Japan. The discovery of this novel subclone, named C1-M27, will contribute control of drug resistant E. coli.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (5 results)

All 2017 2016 Other

All Int'l Joint Research (1 results) Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (3 results) (of which Int'l Joint Research: 2 results)

  • [Int'l Joint Research] University of Calgary(カナダ)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Global Escherichia coli Sequence Type 131 Clade with blaCTX-M-27 Gene2016

    • Author(s)
      Yasufumi Matsumura, Johann D.D. Pitout, Ryota Gomi, Tomonari Matsuda, Taro Noguchi, Masaki Yamamoto, Gisele Peirano, Rebekah DeVinney, Patricia A. Bradford, Mary R. Motyl, Michio Tanaka, Miki Nagao, Shunji Takakura, and Satoshi Ichiyama
    • Journal Title

      Emerging Infectious Diseases

      Volume: 22 Issue: 11 Pages: 1900-1907

    • DOI

      10.3201/eid2211.160519

    • NAID

      120005997864

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] 国内外に分布するCTX-M-27遺伝子陽性ST131型大腸菌の新規クレード2017

    • Author(s)
      松村康史,野口太郎,山本正樹,中野哲志,長尾美紀,田中美智男,一山智
    • Organizer
      第91回日本感染症学会総会・学術講演会 第65回日本化学療法学会学術集会 合同学会
    • Place of Presentation
      東京
    • Related Report
      2016 Annual Research Report
  • [Presentation] The emergence of Escherichia coli ST131 H30 that produce CTX-M-27 in Japan2016

    • Author(s)
      松村康史
    • Organizer
      European Congress of Clinical Microbiology and Infection 2016
    • Place of Presentation
      Amsterdam
    • Year and Date
      2016-04-10
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] The emergence of Escherichia coli ST131 H30 that produce CTX-M-27 in Japan.2016

    • Author(s)
      Y. Matsumura, R. Gomi, T. Matsuda, J. Pitout, R. DeVinney, M. Yamamoto, T. Noguchi, M. Nagao, M. Tanaka, S. Ichiyama
    • Organizer
      The 26th European Congress of Clinical Microbiology and Infectious Diseases
    • Place of Presentation
      Amsterdam, Netherlands
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2018-03-22  

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