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Elucidation of adiponectin expression pathway based on the co-expression network and epigenome data analysis

Research Project

Project/Area Number 15K19242
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Hygiene and public health
Research InstitutionNagoya University

Principal Investigator

Nakatochi Masahiro  名古屋大学, 医学部附属病院, 病院講師 (10559983)

Research Collaborator YOKOTA Mitsuhiro  愛知学院大学, 歯学部, 教授 (50201851)
MATSUBARA Tatsuaki  愛知学院大学, 歯学部, 教授 (30209598)
ICHIHARA Sahoko  自治医科大学, 医学部, 教授 (20378326)
YAMAMOTO Ken  久留米大学, 医学部, 教授 (60274528)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2016: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywordsエピゲノム / レジスチン / アディポネクチン / バイオインフォマティクス / DNAメチル化 / SNP / 生活習慣病 / 心筋梗塞
Outline of Final Research Achievements

Abnormal secretion of adiponectin is deeply involved in the development of lifestyle disease. The blood concentration is known to be affected by the genetic factors. However, the variance of the concentration explained by genes previously identified as associated genes with concentrations is very low.
In this study, we explored DNA methylation sites associated with the adiponectin based on a gene co-expression network analysis and an integration analysis with DNA methylation level using the data for 191 nondiabetic men from a general population and public available data sets. As a result, we identified three sites for both adiponectin level and the expression level of ADIPOQ gene. One site of them was located near a gene, which regulate of ADIPOQ. These results suggest new insights into the regulation of adiponectin via effects on epigenetics.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (10 results)

All 2017 2016 2015

All Journal Article (3 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (7 results) (of which Int'l Joint Research: 4 results,  Invited: 2 results)

  • [Journal Article] Epigenome-wide association of myocardial infarction with DNA methylation sites at loci related to cardiovascular disease.2017

    • Author(s)
      Nakatochi M, Ichihara S, Yamamoto K, Naruse K, Yokota S, Asano H, Matsubara T, Yokota M.
    • Journal Title

      Clin. Epigenetics

      Volume: 9 Issue: 1 Pages: 54-54

    • DOI

      10.1186/s13148-017-0353-3

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] エピジェネティクスによる血漿レジスチン濃度調節機構の解明2017

    • Author(s)
      中杤昌弘, 市原佐保子, 山本健, 横田充弘
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 75 Pages: 229-231

    • NAID

      40021224749

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Epigenome-wide association study suggests that SNPs in the promoter region of RETN influence plasma resistin level via effects on DNA methylation at neighbouring sites.2015

    • Author(s)
      M. Nakatochi, S. Ichihara, K. Yamamoto, K. Ohnaka, Y. Kato, S. Yokota, A. Hirashiki, K. Naruse, H, Asano, H. Izawa, T. Matsubara, and M. Yokota
    • Journal Title

      Diabetologia

      Volume: 58 Issue: 12 Pages: 2781-2190

    • DOI

      10.1007/s00125-015-3763-9

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 遺伝子発現ネットワーク解析に基づく、アディポサイトカインモジュールの探索2017

    • Author(s)
      中杤昌弘
    • Organizer
      第27回日本疫学会学術集会
    • Place of Presentation
      ベルクラシック甲府(山梨県甲府市)
    • Year and Date
      2017-01-25
    • Related Report
      2016 Research-status Report
  • [Presentation] Association analysis among myocardial infarction, cardiovascular disease-related single nucleotide polymorphisms, and DNA methylation sites utilizing the cluster analysis2017

    • Author(s)
      Masahiro Nakatochi, Sahoko Ichihara, Ken Yamamoto, Tatsuaki Matsubara, Mitsuhiro Yokota
    • Organizer
      IFCS
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] pigenome-wide association study for myocardial infarction identified a DNA methylation site on the loci related to atrial fibrillation and ischemic stroke2016

    • Author(s)
      Masahiro Nakatochi, Sahoko Ichihara, Ken Yamamoto, Tatsuaki Matsubara, Mitsuhiro Yokota
    • Organizer
      ASHG 2016
    • Place of Presentation
      Vancouver, Canada
    • Year and Date
      2016-10-18
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Analysis of the association between DNA methylation sites and cardiovascular disease-related single nucleotide polymorphisms in the Japanese population2016

    • Author(s)
      Masahiro Nakatochi, Sahoko Ichihara, Ken Yamamoto, Tatsuaki Matsubara, Mitsuhiro Yokota
    • Organizer
      日本計算機統計学会 30周年記念国際研究集会
    • Place of Presentation
      Seatle, USA
    • Year and Date
      2016-10-16
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] エピゲノムワイド関連研究と一塩基多型(SNP)の統合解析による血漿レジスチン濃度調節機構の解明2016

    • Author(s)
      中杤昌弘, 市原佐保子, 山本健, 大中佳三, 加藤洋介, 横田成紀, 平敷安希博, 成瀬桂子, 浅野展行, 井澤英夫, 松原達昭, 横田充弘
    • Organizer
      第26回日本疫学会学術総会
    • Place of Presentation
      米子コンベンションセンターBigShip(鳥取県米子市)
    • Year and Date
      2016-01-21
    • Related Report
      2015 Research-status Report
  • [Presentation] Epigenetic ageとChronological ageの差分値は非致死性心筋梗塞と関連しない2016

    • Author(s)
      中杤昌弘, 市原佐保子, 山本健, 松原達昭, 横田充弘
    • Organizer
      第22回国際個別化医療学会
    • Place of Presentation
      大崎ブライトコアホール(東京都品川区)
    • Related Report
      2016 Research-status Report
  • [Presentation] Epigenome-wide association study suggests that SNPs in the promoter region of RETN influence plasma resistin level via effects on DNA methylation at neighboring sites2015

    • Author(s)
      Nakatochi M, Ichihara S, Yamamoto K, Ohnaka K, Kato Y, Yokota S, Hirashiki A, Naruse K, Asano H, Izawa H, Matsubara T, Yokota M
    • Organizer
      ASHG 2015
    • Place of Presentation
      Baltimore, USA
    • Year and Date
      2015-10-06
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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