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Comprehensive whole genome sequence analysis using a long read sequencer for delineating molecular mechanism of neurological diseases

Research Project

Project/Area Number 15K20941
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Human genetics
Neurology
Research InstitutionThe University of Tokyo

Principal Investigator

Ishiura Hiroyuki  東京大学, 医学部附属病院, 助教 (40632849)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2015: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsロングリードシーケンス / 全ゲノム配列解析 / 神経変性疾患 / ハプロタイプ解析
Outline of Final Research Achievements

Several kinds of mutations including rearrangements and repeat expansions as well as single nucleotide variants and short insertion/deletions cause neurodegenerative and neuromuscular disorders. Usual exome sequencing, however, overlook some of the mutations. To overcome this, I performed whole genome sequencing using a short read sequencer and a long read sequencer. Some of the mutations can only be delineated by the long read sequencer, indicating the importance of long read sequencing. This strategy will help us to understand the molecular mechanism of neurodegenerative disorders.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (5 results)

All 2016 2015

All Journal Article (5 results) (of which Peer Reviewed: 1 results)

  • [Journal Article] SCD・MSA病型の新研究 遺伝型の最新研究進歩2016

    • Author(s)
      石浦浩之
    • Journal Title

      難病と在宅ケア

      Volume: 22 Pages: 23-26

    • Related Report
      2016 Annual Research Report
  • [Journal Article] ゲノムビッグデータの解析2016

    • Author(s)
      石浦浩之
    • Journal Title

      神経内科

      Volume: 84 Pages: 585-589

    • Related Report
      2016 Annual Research Report
  • [Journal Article] 次世代シーケンサー、次々世代シーケンサーとクリニカルシーケンシング2016

    • Author(s)
      石浦浩之
    • Journal Title

      遺伝子医学MOOK

      Volume: -

    • Related Report
      2015 Research-status Report
  • [Journal Article] 神経遺伝医学研究の歴史的背景と今後の課題2016

    • Author(s)
      辻省次、三井純、石浦浩之
    • Journal Title

      遺伝子医学MOOK

      Volume: -

    • Related Report
      2015 Research-status Report
  • [Journal Article] Epidemiology and molecular mechanism of frontotemporal lobar degeneration/amyotrophic lateral sclerosis with repeat expansion mutation in C9orf72.2015

    • Author(s)
      Ishiura H, Tsuji S.
    • Journal Title

      J Neurogenet

      Volume: 29 Issue: 2-3 Pages: 85-94

    • DOI

      10.3109/01677063.2015.1085980

    • Related Report
      2015 Research-status Report
    • Peer Reviewed

URL: 

Published: 2015-04-16   Modified: 2018-03-22  

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