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Time-resolved analysis of oxygen-binding saturation and structural changes in the crystal of the giant hemoglobin

Research Project

Project/Area Number 15K20971
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Biophysics
Research InstitutionTokyo Medical and Dental University

Principal Investigator

Numoto Nobutaka  東京医科歯科大学, 難治疾患研究所, 助教 (20378582)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywordsヘモグロビン / 協同性 / 構造変化 / X線結晶構造解析 / 顕微分光 / 四次構造変化
Outline of Final Research Achievements

The oxygenated crystals of the giant hemoglobin (molecular mass of about 400 kDa) from an annelid Oligobrachia mashikoi were prepared and then the crystals were shifted to various intermediate rates of oxygen-binding saturation with the soaking method. The crystals were processed by the laser crystal processing machine and these optimally processed crystals permitted us to observe the simultaneous transition in both oxygen dissociation and three-dimensional structure by microspectrophotometry and X-ray diffraction method in a time-resolved manner. The results suggest that while the giant hemoglobin changes from the oxygenated to the deoxygenated state, the local tertiary structural changes occur from a relatively early stage of oxygen dissociation, whereas the quaternary structural change across the molecule occurs a late stage of oxygen dissociation.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (7 results)

All 2016 2015 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (5 results) (of which Invited: 1 results) Remarks (1 results)

  • [Journal Article] Deoxygenated Structure of Invertebrate Giant Hemoglobin2015

    • Author(s)
      沼本修孝,中川太郎,福森義宏,三木邦夫
    • Journal Title

      Seibutsu Butsuri

      Volume: 55 Issue: 5 Pages: 266-268

    • DOI

      10.2142/biophys.55.266

    • NAID

      130005100826

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 巨大ヘモグロビン酸素解離中間体のX線結晶構造と分光学的解析2016

    • Author(s)
      沼本修孝,中川太郎,伊藤暢聡,福森義宏,三木邦夫
    • Organizer
      第54回日本生物物理学会年会
    • Place of Presentation
      つくば国際会議場(茨城県・つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] マシコヒゲムシ巨大ヘモグロビンの酸素解離中間体2016

    • Author(s)
      沼本修孝,中川太郎,伊藤暢聡,福森義宏,三木邦夫
    • Organizer
      日本結晶学会2016年度年会
    • Place of Presentation
      茨城県立県民文化センター(茨城県・水戸市)
    • Year and Date
      2016-11-17
    • Related Report
      2016 Annual Research Report
  • [Presentation] 生物系BL利用と最近の成果について -BL38B1での on line 顕微分光測定-2016

    • Author(s)
      沼本修孝
    • Organizer
      SPRUC放射光構造生物学研究会第6回研究会
    • Place of Presentation
      関西学院大学神戸三田キャンパス(兵庫県・三田市)
    • Year and Date
      2016-08-29
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 巨大ヘモグロビン酸素解離中間状態の解析2016

    • Author(s)
      沼本修孝,中川太郎,伊藤暢聡,福森義宏,三木邦夫
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡県・福岡市)
    • Year and Date
      2016-06-09
    • Related Report
      2016 Annual Research Report
  • [Presentation] マシコヒゲムシ巨大ヘモグロビンのリガンド解離型構造2015

    • Author(s)
      沼本修孝,中川太郎,喜田昭子,伊藤暢聡,福森義宏,三木邦夫
    • Organizer
      日本結晶学会2015年度年会
    • Place of Presentation
      大阪府立大学(大阪府・堺市)
    • Year and Date
      2015-10-17
    • Related Report
      2015 Research-status Report
  • [Remarks] 巨大ヘモグロビンの酸素結合協同性機構の構造生物学的基盤

    • URL

      http://www.tmd.ac.jp/mri/SBS/sb/sub1.html

    • Related Report
      2016 Annual Research Report

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Published: 2015-04-16   Modified: 2018-03-22  

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