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Development of next geranaration solid-state NMR methods and applications to amyloid-ligand interactions

Research Project

Project/Area Number 15K21772
Research Category

Fund for the Promotion of Joint International Research (Home-Returning Researcher Development Research)

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionTokyo Institute of Technology

Principal Investigator

Ishii Yoshitaka  東京工業大学, 生命理工学院, 教授 (40799045)

Project Period (FY) 2017-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥57,200,000 (Direct Cost: ¥44,000,000、Indirect Cost: ¥13,200,000)
Keywords固体NMR / 構造生物学 / 高分解能化 / タンパク質 / アミロイド / 超高速MAS / amyloid / 微量測定 / 高次元NMR / 感度増加 / 蛋白質 / 超高磁場 / 高速MAS
Outline of Final Research Achievements

In this study, we developed the next-generation methodologies of solid-state NMR (SSNMR) and applied SSNMR to amyloid structural biology in the following three projects. In order to enhance sensitivity and resolution, the lack of which has been fundamental problems for NMR-based structural biology, we developed (1) SSNMR methods for observing trace biological samples using ultrafast magic-angle-spinning (MAS) method and (2) high-dimensional SSNMR for improving resolution. (3) We aimed to advance structural biology on the interactions between ligand molecules and amyloid proteins related to Alzheimer's disease. It was suggested that the structure of 42-residue amyloid beta fibrils bound to tea-derived catechin EGCG did not change significantly except for the side chains that could be the binding sites. Through this study, significant progress has been made in SSNMR of biological samples.

Academic Significance and Societal Importance of the Research Achievements

課題(1)では、超高速MAS法を使った感度増加法を開発し、従来法では検出限界以下である数nmolの試料での測定を可能とすることを示せた。課題(2)では、構造の不均一性のため従来法では信号帰属が困難であった繊維状Aβ42アミロイドに対して、4次元固体NMRが2日程度で測定できることも示せた。この手法から得られる高分解能により、3次元固体NMRデータと併せてこの試料の信号の完全帰属と2次構造解析が可能となった。また課題(3)では、微量の抗体とタンパク質GB1の複合体試料から抗体の結合によりGB1の構造が大きく変化することを示した。抗体医薬等への応用も将来的に可能な技術と考えられる。

Report

(6 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (37 results)

All 2021 2020 2019 2018 2017 Other

All Int'l Joint Research (6 results) Journal Article (5 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 5 results) Presentation (26 results) (of which Int'l Joint Research: 14 results,  Invited: 17 results)

  • [Int'l Joint Research] イリノイ大学/シカゴ大学(米国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] シカゴ大学/イリノイ大学(米国)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] イリノイ大学(米国)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] イリノイ大学(米国)

    • Related Report
      2019 Research-status Report
  • [Int'l Joint Research] イリノイ大学シカゴ校(米国)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] TIFR Hyderabad(インド)

    • Related Report
      2018 Research-status Report
  • [Journal Article] Sensitivity-Enhanced Solid-State NMR Detection of Structural Differences and Unique Polymorphs in Pico- to Nanomolar Amounts of Brain-Derived and Synthetic 42-Residue Amyloid-β Fibrils2021

    • Author(s)
      Wickramasinghe Ayesha、Xiao Yiling、Kobayashi Naohiro、Wang Songlin、Scherpelz Kathryn P.、Yamazaki Toshio、Meredith Stephen C.、Ishii Yoshitaka
    • Journal Title

      Journal of the American Chemical Society

      Volume: 143 Issue: 30 Pages: 11462-11472

    • DOI

      10.1021/jacs.1c03346

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Efficient solvent suppression with adiabatic inversion for 1H-detected solid-state NMR2021

    • Author(s)
      Matsunaga Tatsuya、Okabe Ryotaro、Ishii Yoshitaka
    • Journal Title

      Journal of Biomolecular NMR

      Volume: 75 Issue: 10-12 Pages: 365-370

    • DOI

      10.1007/s10858-021-00384-8

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Decoherenece Optimized Tilted-Angle Cross Polarization : A Novel Concept for Sensitivity-enhanced Solid-state NMR using Ultra-fast Magic Angle Spinning.2021

    • Author(s)
      Matsunaga, T. ; Matsuda, I. ; Yamazaki, T. ; Ishii, Y.,
    • Journal Title

      J. Magn. Reson.

      Volume: 322 Pages: 106857-106857

    • DOI

      10.1016/j.jmr.2020.106857

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] NMR-based site-resolved profiling of ホイ-amyloid misfolding reveals structural transitions from pathologically relevant spherical oligomer to fibril.2020

    • Author(s)
      Yiling Xiao, Isamu Matsuda, Masafumi Inoue, Tomoya Sasahara, Minako Hoshi, Yoshitaka Ishii
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 295 Issue: 2 Pages: 458-467

    • DOI

      10.1074/jbc.ra119.008522

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Progress in proton-detected solid-state NMR (SSNMR) : Super-fast 2D SSNMR collection for nano-mole-scale proteins2018

    • Author(s)
      Yoshitaka Ishii*, Ayesha Wickramasinghe, Isamu Matsuda, Yuki Endo, Yuji Ishii, Yusuke Nishiyama, Takahiro Nemoto, Takayuki Kamihara
    • Journal Title

      J. Magn. Reson.

      Volume: 286 Pages: 99-109

    • DOI

      10.1016/j.jmr.2017.11.011

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] Progress in Sensitivity-Enhanced Protein Solid-state NMR using Ultra-fast MAS and Revealing Novel Polymorphs for 42-residue Amyloid--β and other systems2021

    • Author(s)
      Ishii, Yoshitaka
    • Organizer
      ISMAR-APNMR
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Sensitivity-enhanced protein solid-state NMR using ultra-fast MAS and structural studies of misfolded Alzheimer’s amyloid-β2021

    • Author(s)
      Ishii, Yoshitaka
    • Organizer
      Pacifichem 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Progress in protein solid-state NMR: applications to amyloid beta fibrils and other systems2021

    • Author(s)
      Ishii, Yoshitaka
    • Organizer
      分子化学討論会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Development and Application of a High-Sensitivity Cross Polarization Scheme on Ultra-fast Magic Angle Spinning, Decoherence Optimized Tilted-Angle Cross Polarization2021

    • Author(s)
      Matsunaga, Tatsuya Nakata, Kenta Matsuda, Isamu Yamazaki, Toshio Ishii, Yoshitaka
    • Organizer
      ISMAR-APNMR
    • Related Report
      2021 Annual Research Report
  • [Presentation] Theoretical explanation of new solvent suppression scheme with adiabatic pulse and application for solid-state NMR experiments2021

    • Author(s)
      Matsunaga, Tatsuya Okabe, Ryotaro Ishii, Yoshitaka
    • Organizer
      ISMAR-APNMR
    • Related Report
      2021 Annual Research Report
  • [Presentation] Side-chain selective deuteration of proteins for solid-state NMR analysis2021

    • Author(s)
      Terami, Hibiki Shigemitsu, Yoshiki Miyazaki, Yuki Yamazaki, Toshio Matsunaga, Tatsuya Ishii, Yoshitaka
    • Organizer
      ISMAR-APNMR
    • Related Report
      2021 Annual Research Report
  • [Presentation] Innovation in Protein SSNMR using Ultra-fast MAS and New Polymorphs of Alzheimer's Amyloid-beta.2020

    • Author(s)
      Ishii, Y.
    • Organizer
      ICMRBS Web Seminar (Web conference)
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Recent Progress in High-field Biomolecular Solid-state NMR and Beyond.2020

    • Author(s)
      Ishii, Y.
    • Organizer
      Yokohama NMR Symposium
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] Development of high efficient 13C-13C and 13C-1H magnetization transfer with band-selective CP on Ultrafast MAS.2020

    • Author(s)
      Matsunaga, T., Takahashi, R. ; Ishii, Y.
    • Organizer
      The 59th Annual Meeting of the Nuclear Magnetic Resonance Society of Japan,
    • Related Report
      2020 Research-status Report
  • [Presentation] Structural Differences and Novel Polymorphs of Synthetic and Brain-derived Aβ42 Fibrils by 1H-detected SSNMR2020

    • Author(s)
      Wickramasinghe, A. ; Xiao, Y. ; Kobayashi, N. ; Yamazaki, T. ; Ishii, Y.
    • Organizer
      In The 59th Annual Meeting of the Nuclear Magnetic Resonance Society of Japan
    • Related Report
      2020 Research-status Report
  • [Presentation] Detection of structural changes by adding EGCG to Aβ(1-42) fibrils using solid-state NMR2020

    • Author(s)
      Fujita, K. ; Matsuda, I. ; Ishii, Y.
    • Organizer
      In The 59th Annual Meeting of the Nuclear Magnetic Resonance Society of Japan
    • Related Report
      2020 Research-status Report
  • [Presentation] Breaking Sensitivity Boundary for High-Dimensional Protein SSNMR using Ultra-fast MAS and Structural Studies of Alzheimer's Amyloid-beta,2019

    • Author(s)
      Ishii, Y. ; Kamihara, T. ; Matsuda, I. ; & Xiao, Y.
    • Organizer
      EUROISMAR 2019 (Berlin, Germarny)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Solid-state NMR Studies of Amyloid Fibrils and Oligomers2019

    • Author(s)
      Ishii, Y.
    • Organizer
      5th Polish-Korean Conference on Protein Folding - Theoretical and Experimental Approaches (Soeul, Korea)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] In “Innovations” by High-speed-MAS SSNMR2019

    • Author(s)
      Ishii, Y.
    • Organizer
      ISMAR Conversation on “High-Speed Magic-Angle Spinning : What are the Advantages and Limitations?”(On-line international meeting)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Protein Solid-state NMR using Ultra-fast MAS and Structural Studies of Alzheimer's Amyloid2019

    • Author(s)
      Ishii, Y.
    • Organizer
      3rd Chinese Biomolecular NMR Meeting (Wuhan, China)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Unexpected Prion-like Cross Talk between Abeta42 and Abeta40 studied by solid-state NMR2019

    • Author(s)
      Ishii, Y. ; Xiao, Y. ; Yoo, B. ; Matsuda, I. ; McElheny, D.
    • Organizer
      The 58-th Annual Meeting of the Nuclear Magnetic Resnance Society of Japan (Kanagawa, Japan)
    • Related Report
      2019 Research-status Report
  • [Presentation] Sensitivity-Enhanced Protein Solid-state NMR using Ultra-fast MAS and Structural Studies of Alzheimer's Amyloid-β.2019

    • Author(s)
      Ishii, Y.
    • Organizer
      2nd India-Japan Workshop on Magnetic Resonance (Hyderabad, India)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Innovations by High-Speed MAS SSNMR and SSNMR Studies of Misfolded Amyloid-β, Telluride Conference2019

    • Author(s)
      Ishii, Y.
    • Organizer
      Emerging Methodologies for Paramagnetic NMR and Dynamic Nuclear Polarization in Biological and Inorganic Materials (Telluride, CO, USA)
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Prion-like propagation and structural conversion of Alzheimer's amyloid-β : solid-state NMR studies2018

    • Author(s)
      石井佳誉
    • Organizer
      The 6th International Symposium on Drug Discovery and Design by NMR
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Recent progress of high-resolution solid-state NMR : Applications to misfolded amyloid-beta proteins and graphene-based systems2018

    • Author(s)
      石井佳誉
    • Organizer
      理研シンポジウム 「第19回分析・解析技術と化学の最先端」
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Solid-state NMR Studies of Graphene-based Systems and Nano-mole-scale Protein Solid-state NMR using Ultra-fast MAS2018

    • Author(s)
      石井佳誉
    • Organizer
      Experimental NMR conference
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Biomolecular solid-state NMR : recent advances & applications to amyloid protein2018

    • Author(s)
      石井佳誉
    • Organizer
      日本分光学会NMR分光部会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Solid-state NMR (SSNMR) Studies of Graphene-based Systems and Nano-mole-scale Protein SSNMR using Ultra-fast MAS2018

    • Author(s)
      石井佳誉
    • Organizer
      ACS National Meeting
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Solid-state NMR (SSNMR) Studies of Misfolded β-Amyloid Assemblies and Graphen-based Nanomaterials2017

    • Author(s)
      石井佳誉
    • Organizer
      University of Wisconsin at Madison Chemistry Seminar
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] High-field Protein Solid-state NMR : Its Past, Present, and Prospects2017

    • Author(s)
      石井佳誉
    • Organizer
      理研 NMRプラットフォーム Workshop
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Solid-state NMR (SSNMR) Studies of Carbon Nanomaterials and Protein SSNMR using Paramagnetic Agents2017

    • Author(s)
      石井佳誉
    • Organizer
      Telluride Workshop
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited

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Published: 2016-10-04   Modified: 2023-01-30  

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