• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

The analysis of transcriptional mechanism intermediated by a novel histone modification reader protein(Fostering Joint International Research)

Research Project

Project/Area Number 15KK0251
Research Category

Fund for the Promotion of Joint International Research (Fostering Joint International Research)

Allocation TypeMulti-year Fund
Research Field Medical genome science
Research InstitutionThe University of Tokyo

Principal Investigator

KANKI YASUHARU  東京大学, アイソトープ総合センター, 助教 (00534869)

Research Collaborator Subramaniam Sriram  National Institute of Health, National Cancer Institute・Center for Cell Research・Laboratory of Cell Biology・Biophysics Section・High Resolution Electron Microscopy, Senior Director
Project Period (FY) 2016 – 2017
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
Keywordsクライオ電子顕微鏡 / ピルビン酸キナーゼ / 抗がん剤 / 単粒子解析 / 構造生物学 / 酵素 / ゲノム医科学 / エピジェネティクス
Outline of Final Research Achievements

Pyruvate kinase (PK) catalyzes the last irreversible step of glycolysis, and is known to be one of the rate-limiting enzyme of glycometabolism. There are four PK isoforms in mammals, PKM2 knockout lead to the reduction of cancer cell growth. Therefore, to elucidate the molecular mechanism of PKM2 enzymatic activity by atomic level is very valuable to develop a new drug on various kinds of cancer. In this project, we use the latest cryo-electron microscopy machine to resolve the atomic model of human PKM2 wild type and patient-derived mutant PKM2 H391Y. By using a single particle analysis, we clarified PKM2-WT, and PKM2-H391Y for the resolution of 2.9 Å and 3.1 Å, respectively. Taken together, we learned how to use a breakthrough technology in structural biology field in this international collaborating grant.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (11 results)

All 2018 2017 2016 Other

All Int'l Joint Research (1 results) Journal Article (4 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] National Institute of Health(米国)2016

    • Year and Date
      2016-09-01
    • Related Report
      2017 Annual Research Report
  • [Journal Article] Genome-wide analysis revealed that DZNep reduces tubulointerstitial fibrosis via down-regulation of pro-fibrotic genes.2018

    • Author(s)
      Mimura I, Hirakawa Y, Kanki Y, Nakaki R, Suzuki Y, Tanaka T, Aburatani H, Nangaku M.
    • Journal Title

      Sci Rep.

      Volume: 28 Issue: 1 Pages: 3779-3779

    • DOI

      10.1038/s41598-018-22180-5

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of Cardiomyocyte-Fated Progenitors from Human-Induced Pluripotent Stem Cells Marked with CD822018

    • Author(s)
      Takeda Masafumi、Kanki Yasuharu、Masumoto Hidetoshi、Funakoshi Shunsuke、Hatani Takeshi、Fukushima Hiroyuki、Izumi-Taguchi Akashi、Matsui Yusuke、Shimamura Teppei、Yoshida Yoshinori、Yamashita Jun K.
    • Journal Title

      Cell Reports

      Volume: 22 Issue: 2 Pages: 546-556

    • DOI

      10.1016/j.celrep.2017.12.057

    • NAID

      120006460050

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Novel lnc RNA regulated by HIF-1 inhibits apoptotic cell death in the renal tubular epithelial cells under hypoxia.2017

    • Author(s)
      Mimura I, Hirakawa Y, Kanki Y, Kushida N, Nakaki R, Suzuki Y, Tanaka T, Aburatani H, Nangaku M.
    • Journal Title

      Physiol Rep.

      Volume: 5 Issue: 8 Pages: e13203-e13203

    • DOI

      10.14814/phy2.13203

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamically and epigenetically coordinated GATA/ETS/SOX transcription is indispensable for endothelial cell differentiation2017

    • Author(s)
      Kanki Y, Nakaki R, Shimamura T, Matsunaga T, Yamamizu K, Katayama S, Suehiro JI, Osawa T, Aburatani H, Kodama T, Wada Y, Yamashita JK, Minami T.
    • Journal Title

      Nucleic Acids Research

      Volume: 印刷中 Issue: 8 Pages: 4344-4358

    • DOI

      10.1093/nar/gkx159

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] ヒストン修飾酵素による動脈硬化関連遺伝子発現制御解析2018

    • Author(s)
      神吉康晴
    • Organizer
      第4回血管生物若手研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Single particle analysis by cryo-electron microscopy2017

    • Author(s)
      Yasuharu Kanki, Sagar Chittori, Doreen Matthies, Prashant Rao, Alan A. Merk, Sriram Subramaniam
    • Organizer
      ConBio2017
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] microRNA-histone modification network in TNFa-stimulated inflammatory endothelium2017

    • Author(s)
      東島佳毅、神吉康晴、井上剛、南学正臣、古川哲史、和田洋一郎
    • Organizer
      ConBio2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] Lysine Demethylase 6A and 7A REgulated by MicroRNA-3679-5p Mediates TNFa-induced Inflammatory Signaling in Vascular Endotehlium2017

    • Author(s)
      Yoshiki HIGASHIJIMA, Tsuyoshi INOUE, Masaomi NANGAKU, Youichiro WADA, Tetsushi FURUKAWA, Yasuharu KANKI
    • Organizer
      American Heart Association 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Book] 実験医学2017年8月号2017

    • Author(s)
      神吉康晴
    • Total Pages
      6
    • Publisher
      羊土社
    • Related Report
      2017 Annual Research Report
  • [Remarks] 血管分化を導く遺伝プログラムの一部を解明 ―血管分化におけるヒストンと転写のはたらきを同定―

    • URL

      http://www.ric.u-tokyo.ac.jp/res/res20170328.htm

    • Related Report
      2016 Research-status Report

URL: 

Published: 2016-10-04   Modified: 2019-03-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi