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Whole genome manipulation for understanding of biology of unculturable bacteria(Fostering Joint International Research)

Research Project

Project/Area Number 15KK0266
Research Category

Fund for the Promotion of Joint International Research (Fostering Joint International Research)

Allocation TypeMulti-year Fund
Research Field System genome science
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

kakizawa shigeyuki  国立研究開発法人産業技術総合研究所, 生命工学領域, 主任研究員 (10588669)

Research Collaborator Glass John  The J. Craig Venter Institute, Synthetic Biology & Bioenergy group, Professor
Suzuki Yo  The J. Craig Venter Institute, Synthetic Biology & Bioenergy group, Assistant Professor
Wise Kim  The J. Craig Venter Institute, Synthetic Biology & Bioenergy group, Senior Scientist
Project Period (FY) 2016 – 2017
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥15,470,000 (Direct Cost: ¥11,900,000、Indirect Cost: ¥3,570,000)
Keywords細菌 / ゲノム / 合成生物学 / 微生物 / 遺伝子
Outline of Final Research Achievements

The aim of this project is establishing novel techniques to handle large genomic DNA fragments and to analyze biology of unculturable bacteria. In this project, I used a new plasmid vector that could be replicate in mycoplasma cells, and tried to introduce large DNA fragment into the plasmid vector. In this way, there are less risks of shearing of large DNA molecules during handling. First, I analyzed several characteristics of this plasmid, e.g., replication efficiency, effective transformation methods, etc. Next, I tried to modify the plasmid in Yeast cells, since the vector could be introduced into Yeast cells.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (4 results)

All 2018 2016

All Int'l Joint Research (1 results) Presentation (3 results) (of which Int'l Joint Research: 2 results)

  • [Int'l Joint Research] クレイグ・ベンター研究所(米国)2016

    • Year and Date
      2016-08-08
    • Related Report
      2017 Annual Research Report
  • [Presentation] ミニマムゲノム細菌の遺伝子機能解明に向けたCRIPSRiによる遺伝子ノックダウン系の開発2018

    • Author(s)
      柿澤 茂行, 田中 一己, Yo Suzuki
    • Organizer
      第12回 日本ゲノム微生物学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Inducible CRISPRi in the minimal mycoplasma2018

    • Author(s)
      Shigeyuki Kakizawa
    • Organizer
      The 7th Meeting of the Asian Organization for Mycoplasmology (AOM)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] TUNING GENE ACTIVITY BY INDUCIBLE AND TARGETED REGULATION OF GENE EXPRESSION IN MINIMAL BACTERIAL CELLS2018

    • Author(s)
      Shigeyuki Kakizawa
    • Organizer
      The 22nd Congress of the International Organization for Mycoplasmology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research

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Published: 2016-10-04   Modified: 2019-03-29  

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