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Construction and Experimental Validation of Mechanical Models for Cell Division

Research Project

Project/Area Number 15KT0083
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeMulti-year Fund
Section特設分野
Research Field Constructive Systems Biology
Research InstitutionNational Institute of Genetics

Principal Investigator

Kimura Akatsuki  国立遺伝学研究所, 遺伝メカニズム研究系, 教授 (10365447)

Co-Investigator(Kenkyū-buntansha) 舟橋 啓  慶應義塾大学, 理工学部(矢上), 准教授 (70324548)
Research Collaborator HIROI Noriko  
TADA Shohei  
YOSHIMI Yusuke  
MOTOMURO Mikiko  
YAMAZAKI Yoshitaka  
Project Period (FY) 2015-07-10 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2017: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2016: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2015: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
Keywords線虫 / 胚発生 / 細胞分裂 / 細胞骨格 / 中心体
Outline of Final Research Achievements

We set the dynamics of the spatial organization during cell division as the target system. We constructed models for various processes such as the centration of cell nucleus, the elongation of mitotic spindle, and cytokinesis. Furthermore, we attempted to unify models of a series of processes to model entire cell division. Representative achievements include (i) construction of a unified model for nuclear centration to spindle elongation processes and its experimental validation, (ii) construction of numerical models for 2 different cytoplasmic streaming processes and the estimation of the model parameters, and (iii) construction of a numerical model for the arrangement of cells after divisions. Overall, our models cover major spatial reorganization events during cell division, and contribute to understand the cell division processes as a whole.

Academic Significance and Societal Importance of the Research Achievements

学術的な意義としては、細胞分裂の各プロセスの数理モデル構築と実験的検証を行うことによって、細胞分裂に関する理解の到達点と未解明な点を明確にできたことである。一連の研究結果を踏まえて、今後、さらなるモデル化のための研究課題が明確となった。また、本研究で推し進めた研究は、生命システムのモデルを構築し実験的に検証する点で生命システム研究の構成的アプローチの先駆的な研究例となった。

Report

(5 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (41 results)

All 2019 2018 2017 2016 2015 Other

All Int'l Joint Research (4 results) Journal Article (10 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 10 results,  Open Access: 7 results,  Acknowledgement Compliant: 2 results) Presentation (19 results) (of which Int'l Joint Research: 10 results,  Invited: 9 results) Book (1 results) Remarks (7 results)

  • [Int'l Joint Research] Marine Biological Laboratory(米国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Bayreuth University(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] キュリー研究所(フランス)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] EMBL(ドイツ)

    • Related Report
      2016 Research-status Report
  • [Journal Article] Choice between 1- and 2-furrow cytokinesis in Caenorhabditis elegans embryos with tripolar spindles2019

    • Author(s)
      Kondo Tomo、Kimura Akatsuki
    • Journal Title

      Molecular Biology of the Cell

      Volume: 30 Issue: 16 Pages: 2065-2075

    • DOI

      10.1091/mbc.e19-01-0075

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tumor suppressor APC is an attenuator of spindle-pulling forces duringC. elegansasymmetric cell division2018

    • Author(s)
      Sugioka Kenji、Fielmich Lars-Eric、Mizumoto Kota、Bowerman Bruce、van den Heuvel Sander、Kimura Akatsuki、Sawa Hitoshi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 115 Issue: 5

    • DOI

      10.1073/pnas.1712052115

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An asymmetric attraction model for the diversity and robustness of cell arrangement in nematodes2017

    • Author(s)
      Yamamoto Kazunori、Kimura Akatsuki
    • Journal Title

      Development

      Volume: 144 Issue: 23 Pages: 4437-4449

    • DOI

      10.1242/dev.154609

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans2017

    • Author(s)
      Arai Ritsuko、Sugawara Takeshi、Sato Yuko、Minakuchi Yohei、Toyoda Atsushi、Nabeshima Kentaro、Kimura Hiroshi、Kimura Akatsuki
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 3631-3631

    • DOI

      10.1038/s41598-017-03483-5

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Physical properties of the chromosomes and implications for development2017

    • Author(s)
      Sugawara Takeshi、Kimura Akatsuki
    • Journal Title

      Development, Growth & Differentiation

      Volume: 59 Issue: 5 Pages: 405-414

    • DOI

      10.1111/dgd.12363

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Endoplasmic Reticulum-Mediated Microtubule Alignment Governs Cytoplasmic Streaming2017

    • Author(s)
      Kenji Kimura, Alexandre Mamane, Tohru Sasaki, Kohta Sato, Jun Takagi, Ritsuya Niwayama, Lars Hufnagel, Yuta Shimamoto, Jean-Francois Joanny, Seiichi Uchida, and Akatsuki Kimura
    • Journal Title

      Nature Cell Biology

      Volume: 19 Issue: 4 Pages: 399-406

    • DOI

      10.1038/ncb3490

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A genetically encoded probe for live-cell imaging of H4K20 monomethylation2016

    • Author(s)
      Sato Y., Kujirai T., Arai R., Asakawa H., Ohtsuki C., Horikoshi N., Yamagata K., Ueda J., Nagase T., Haraguchi T., Hiraoka Y., Kimura A., Kurumizaka H., Kimura, H.
    • Journal Title

      J. Mol. Biol.

      Volume: 428 Issue: 20 Pages: 3885-3902

    • DOI

      10.1016/j.jmb.2016.08.010

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] How Does a Cell’s Nucleus Know Where the Center of the Cell Is?2016

    • Author(s)
      谷本博一, 木村健二, 木村暁
    • Journal Title

      Seibutsu Butsuri

      Volume: 56 Issue: 5 Pages: 271-274

    • DOI

      10.2142/biophys.56.271

    • NAID

      130005264927

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Bayesian Inference of Forces Causing Cytoplasmic Streaming in Caenorhabditis elegans Embryos and Mouse Oocytes.2016

    • Author(s)
      Niwayama R., Nagao H., Kitajima T. S., Hufnagel L., Shinohara K., Higuchi T., Ishikawa T., Kimura A.
    • Journal Title

      PLoS ONE

      Volume: 11 Issue: 7 Pages: e0159917-e0159917

    • DOI

      10.1371/journal.pone.0159917

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Interphase adhesion geometry is transmitted to an internal regulator for spindle orientation via caveolin-1.2016

    • Author(s)
      Matsumura S., Kojidani T., Kamioka Y., Uchida S., Haraguchi T., Kimura A., and Toyoshima F.
    • Journal Title

      Nature Communications

      Volume: 7 Issue: 1 Pages: 11858-11858

    • DOI

      10.1038/ncomms11858

    • NAID

      120005774665

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Cortical flowに着目した細胞質流動シミュレーション2019

    • Author(s)
      山崎 孔敬
    • Organizer
      定量生物学の会 第9回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 遠心顕微鏡で細胞核を動かし、力を定量する2019

    • Author(s)
      木村暁
    • Organizer
      定量生物学の会第9回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Mechanical Modeling of Cell Migration During the Early Embryogenesis of C. elegans to Reveal the Mechanism for Controlling Cell Arrangement2019

    • Author(s)
      Motomuro M
    • Organizer
      The Seventh Annual Winter Q-Bio Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] In silico及びin vivo実験による有糸分裂期中心体位置制御機構の解明2018

    • Author(s)
      Yamazaki Y
    • Organizer
      第2回慶應ライフサイエンスシンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] 線虫初期胚における細胞位置決定モデルの構築2018

    • Author(s)
      本室 美貴子
    • Organizer
      第2回慶應ライフサイエンスシンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] Microtubule-dependent positioning of the nucleus in the C. elegans embryo2018

    • Author(s)
      Kimura A
    • Organizer
      EMBO/EMBL Symposia: Microtubules: From Atoms to Complex Systems
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Measurement of intracellular forces using centrifuge polarization microscope (CPM).2017

    • Author(s)
      Akatsuki Kimura
    • Organizer
      International Workshop on Quantitative Biology 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] バイオ画像解析支援をうけた細胞内の力発生メカニズムの理解2017

    • Author(s)
      木村暁
    • Organizer
      生命科学4プラットフォーム成果シンポジウム
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] 細胞核はどうして細胞の中心に配置できるのか? -遺伝学、計算、マイクロデバイス、遠心顕微鏡を使った解析-2017

    • Author(s)
      木村暁
    • Organizer
      日本大学文理学部生命科学セミナー「細胞核機能の発現と制御」
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Emergence and reversal of cytoplasmic streaming in the C. elegance nematode zygote.2017

    • Author(s)
      Akatsuki Kimura
    • Organizer
      International workshop on Active Soft Matter and Ethology
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanism of spontaneous alignment of microtubules during meiotic cytoplasmic streaming in the C. elegans zygote.2017

    • Author(s)
      Akatsuki Kimura
    • Organizer
      Hierarchy of biological functions connected by concept of active matter
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] A self-organization model for the emergence and reversal of meiotic cytoplasmic streaming in the C. elegans embryo.2017

    • Author(s)
      Akatsuki Kimura
    • Organizer
      International Symposium on Fluctuation and Structure out of Equilibrium 2017 (SFS2017)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 核の細胞内配置を(数理モデルで)造る・(実験的に)操作する2017

    • Author(s)
      木村暁
    • Organizer
      2017年度生命科学系学会合同年次大会(ConBio2017)
    • Related Report
      2017 Research-status Report
  • [Presentation] Cytoplasmic Streaming in the nematode, C. elegans.2017

    • Author(s)
      Akatsuki Kimura
    • Organizer
      Active Matter Workshop 2018
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Influence of cellular aspect ratio to pole-pole distance during anaphase2016

    • Author(s)
      Shohei Tada, Kazunori Yamamoto, Yusuke Yoshimi, Mitsunori Ozeki, Takumi Hiraiwa, Noriko Hiroi, Akatsuki Kimura, Akira Funahashi
    • Organizer
      NIG Iternational Symposium 2016 Japan Q-Bio week, Mishima Symposium
    • Place of Presentation
      国立遺伝学研究所、三島
    • Year and Date
      2016-01-12
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Determining the position of cleavage furrow at cytokinesis using hydrodynamic simulation2016

    • Author(s)
      Yusuke Yoshimi, Shohei Tada, Noriko Hiroi, Akatsuki Kimura and Akira Funahashi
    • Organizer
      NIG Iternational Symposium 2016 Japan Q-Bio week, Mishima Symposium
    • Place of Presentation
      国立遺伝学研究所、三島
    • Year and Date
      2016-01-12
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Substance delivery technique for intracellular measurements in C. elegans embryos2016

    • Author(s)
      Yohei Kikuchi, Akatsuki Kimura
    • Organizer
      NIG Iternational Symposium 2016 Japan Q-Bio week, Tokyo Symposium
    • Place of Presentation
      東京大学、東京
    • Year and Date
      2016-01-09
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Imaging and modeling of cytoplasmic streaming in the C. elegans embryo.2016

    • Author(s)
      Akatsuki Kimura
    • Organizer
      The 54th Annual Meeting of the BSJ.
    • Place of Presentation
      Tsukuba
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] A mechanism of self-organization in meiotic cytoplasmic streaming of the C. elegans embryo.2015

    • Author(s)
      Akatsuki Kimura
    • Organizer
      The 53rd Annual Meeting of the Biophysical Society of Japan (BSJ2015)
    • Place of Presentation
      金沢大学、金沢
    • Year and Date
      2015-09-15
    • Related Report
      2015 Research-status Report
    • Invited
  • [Book] 定量生物学2018

    • Author(s)
      小林 徹也
    • Total Pages
      250
    • Publisher
      化学同人
    • ISBN
      9784759817300
    • Related Report
      2018 Annual Research Report
  • [Remarks] 2つに分裂するか、3つに分裂するか、それが問題だ

    • URL

      https://www.nig.ac.jp/nig/ja/2019/04/research-highlights_ja/rh20190304.html

    • Related Report
      2018 Annual Research Report
  • [Remarks] 国立遺伝学研究所細胞建築研究室

    • URL

      http://cellarchlab.galaxy.bindcloud.jp/home_jp.html

    • Related Report
      2018 Annual Research Report
  • [Remarks] APCは紡錘体を引っ張る力のブレーキ がん抑制遺伝子APCの新しい機能の発見

    • URL

      https://www.nig.ac.jp/nig/ja/2018/01/research-highlights_ja/20180119-2.html

    • Related Report
      2017 Research-status Report
  • [Remarks] 細胞核内のDNA密度と、分裂期染色体の凝縮度との間の種を越えた相関関係

    • URL

      https://www.nig.ac.jp/nig/ja/2017/12/research-highlights_ja/20171220.html

    • Related Report
      2017 Research-status Report
  • [Remarks] 初期胚発生過程における染色体の動きの変化を検出

    • URL

      https://www.nig.ac.jp/nig/ja/2017/12/research-highlights_ja/20171220-2.html

    • Related Report
      2017 Research-status Report
  • [Remarks] はじまりは卵の形だった~初期胚における細胞の配置パターンの決定機構~

    • URL

      https://www.nig.ac.jp/nig/ja/2017/11/research-highlights_ja/20171129.html

    • Related Report
      2017 Research-status Report
  • [Remarks] 研究室ウェブサイト

    • URL

      https://www.nig.ac.jp/nig/ja/research/organization-top/laboratories/kimura

    • Related Report
      2016 Research-status Report

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Published: 2015-07-14   Modified: 2020-03-30  

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