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Quantum chemistry method to analyze important orbital interactions in enzymatic reactions for controlling their reaction path

Research Project

Project/Area Number 15KT0146
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section特設分野
Research Field Transition State Control
Research InstitutionKyushu University

Principal Investigator

ORIMOTO YUUICHI  九州大学, グリーンアジア国際リーダー教育センター, 助教 (00398108)

Project Period (FY) 2015-07-10 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords酵素触媒反応 / 遷移状態 / 軌道間相互作用 / 振動解析 / 反応経路解析 / 電子状態計算 / スルースペース/ボンド相互作用 / オーダーN Elongation法
Outline of Final Research Achievements

I aim to develop a new quantum chemistry method to estimate important orbital interactions in enzymatic reactions based on our developed through-space/bond (TS/TB) interaction analysis method. For the purpose, the TS/TB method was combined with methodologies for transition state search, frequency analysis and reaction coordinate analysis. Toward its application for larger systems, the RLMO-based TS/TB method was developed for analyzing interactions in the unit of region by using region localized molecular orbitals (RLMOs) generated during linear-scaling elongation method calculations. Separately, transition state analysis using model systems was performed to acquire knowledge on isoselectivity of metallocene, peptide-degrading serine protease, and enantioselective acyl-lipase.

Academic Significance and Societal Importance of the Research Achievements

電子相関効果を含めた相互作用解析法を基盤とした本手法は、遷移状態安定化や反応経路決定に重要な軌道相互作用を高確度に突き止める事ができる世界に類の無いアプローチである。超高精度O(N) ELG 法との結合は開発中であるが、完成すれば酵素等の生体分子の遷移状態解析法として世界をリードできる。身近なPC上で酵素反応解析が可能となれば病気の原因解明や創薬の高速化、難病等に対してミクロな視点から解決の突破口となる事も期待できる。酵素反応に限らず、有機・無機の機能性高分子、触媒、レアメタルフリー材料等の開発における反応制御・設計に貢献でき、基礎研究から医薬学、産業分野の最前線まで広く波及効果が期待できる。

Report

(5 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (26 results)

All 2019 2018 2017 2016

All Journal Article (7 results) (of which Peer Reviewed: 7 results,  Acknowledgement Compliant: 3 results) Presentation (18 results) (of which Int'l Joint Research: 7 results) Book (1 results)

  • [Journal Article] Extraction of One-Handed Helical Frontier Orbital in Even [n]Cumulenes by Breaking Mirror Images of Right- and Left-Handed Helical Orbitals: Theoretical Study2019

    • Author(s)
      Orimoto Yuuichi、Aoki Yuriko、Imamura Akira
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 印刷中 Issue: 17 Pages: 11134-11139

    • DOI

      10.1021/acs.jpcc.9b01829

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] One-Handed Helical Orbitals in Conjugated Molecules2018

    • Author(s)
      Aoki Yuriko、Orimoto Yuuichi、Imamura Akira
    • Journal Title

      ACS Central Science

      Volume: 4 Issue: 6 Pages: 664-665

    • DOI

      10.1021/acscentsci.8b00228

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of Pyridinium Groups and Iodide Ions in Photoelectrochromism in Viologen-Based Ion-Pair Charge-Transfer Complexes: Molecular Orbital Analysis2018

    • Author(s)
      Orimoto Yuuichi、Ishimoto Kosuke、Aoki Yuriko
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 122 Issue: 8 Pages: 4546-4556

    • DOI

      10.1021/acs.jpcc.7b10281

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Importance of Through-Space Interaction of [2,2′]-Paracyclophane-oligo(p-phenylenevinylene) Molecular Wires for Photovoltaic Application and Effective Wire Design by Chemical Substitution2017

    • Author(s)
      Yuuichi Orimoto, Kohei Kato, and Yuriko Aoki
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 121 Issue: 33 Pages: 17703-17711

    • DOI

      10.1021/acs.jpcc.7b05730

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Theoretical Study of Cu Intercalation Through a Defect in Zero-Layer Graphene on SiC Surface2017

    • Author(s)
      Yuuichi Orimoto, Kohei Otsuka, Kazuma Yagyu, Hiroshi Tochihara,Takayuki Suzuki, and Yuriko Aoki
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 121 Issue: 13 Pages: 7294-7302

    • DOI

      10.1021/acs.jpcc.7b00314

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Computational study of Cu-containing artificial DNA: twist angle dependence of magnetism2016

    • Author(s)
      Yuuichi Orimoto and Yuriko Aoki
    • Journal Title

      ChemistrySelect

      Volume: 1 Issue: 17 Pages: 5521-5529

    • DOI

      10.1002/slct.201600940

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Automated property optimization via ab initio O(N) elongation method: application to (hyper-)polarizability in DNA2016

    • Author(s)
      Yuuichi Orimoto and Yuriko Aoki
    • Journal Title

      The Journal of Chemical Physics

      Volume: 145 Issue: 2

    • DOI

      10.1063/1.4956456

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] High throughput molecular design/exploration for DNA bulge/mismatch recognition: computational approach by elongation method2018

    • Author(s)
      Yuuichi Orimoto, Anna Pomogaeva, Ayaka Yano, Kazuhiko Nakatani, Yuriko Aoki
    • Organizer
      The 45th International Symposium on Nucleic Acids Chemistry (ISNAC2018), Kyoto(JAPAN)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Ab initio MO study of propylene polymerization by zirconocene/borate catalyst2018

    • Author(s)
      Yuuichi Orimoto, Satoru Shirane, and Yuriko Aoki
    • Organizer
      16-th V.A. Fock Meeting on Theoretical, Quantum and Computational Chemistry, Sochi(Russia)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of efficient elongation method toward locally perturbed aperiodic nano/bio systems2018

    • Author(s)
      Yuriko Aoki, Anna Pomogaeva, Yuuichi Orimoto
    • Organizer
      7th JCS SYMPOSIUM, PRAGUE (Czech Republic)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] メタロセン触媒の高イソ選択的オレフィン重合反応の量子化学的機構解明 -遷移状態構造における歪と緩和-2018

    • Author(s)
      折本裕一、白根聡、青木百合子
    • Organizer
      シンポジウム「化学反応経路探索のニューフロンティア2018」、福岡
    • Related Report
      2018 Annual Research Report
  • [Presentation] ナノリボン末端修飾による構造転移に関する量子化学的研究 -有機太陽電池ワイヤー設計に向けて-2018

    • Author(s)
      青木百合子、折本裕一
    • Organizer
      シンポジウム「化学反応経路探索のニューフロンティア2018」、福岡
    • Related Report
      2018 Annual Research Report
  • [Presentation] 高精度かつ効率的ナノチューブ表面反応の電子状態解析法2018

    • Author(s)
      Pomogaeva Anna,折本 裕一,青木 百合子
    • Organizer
      第12回分子科学討論会、福岡
    • Related Report
      2018 Annual Research Report
  • [Presentation] リパーゼのエナンチオ選択性の発現に関する量子化学的反応機構解析2018

    • Author(s)
      汐見 彩花,折本 裕一,青木 百合子
    • Organizer
      第12回分子科学討論会、福岡
    • Related Report
      2018 Annual Research Report
  • [Presentation] 多階層Elongation構造最適化法によるDNAバルジ/ミスマッチ認識分子の効率探索と理論設計2018

    • Author(s)
      折本 裕一,Pomogaeva Anna, 矢野 綾香,中谷 和彦,青木 百合子
    • Organizer
      第12回分子科学討論会、福岡
    • Related Report
      2018 Annual Research Report
  • [Presentation] 光学スイッチ設計に向けたビオロゲン含有ポリマーのフォトエレクトロクロミズムに関する量子化学的研究2018

    • Author(s)
      石本 晃佑,折本 裕一,青木 百合子
    • Organizer
      第12回分子科学討論会、福岡
    • Related Report
      2018 Annual Research Report
  • [Presentation] Mechanism of highly selective olefin polymerization by metallocene catalyst: computational approach2018

    • Author(s)
      Yuuichi Orimoto, Satoru Shirane and Yuriko Aoki
    • Organizer
      IRCCS-JST CREST Joint Symposium, Fukuoka
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Elongation method for efficient quantum chemistry calculations toward functional designs of bio/nano materials2018

    • Author(s)
      Yuriko Aoki, Wataru Mizukami, Ikuko Okawa, Yuuichi Orimoto
    • Organizer
      第一回 九州大学女性研究者ダイバーシティーシンポジウム、福岡
    • Related Report
      2017 Research-status Report
  • [Presentation] Selectivity of olefin polymerization with metallocene catalyst and the effects of producted polymers on its mechanism2017

    • Author(s)
      Satoru Shirane, Yuuichi Orimoto and Yuriko Aoki
    • Organizer
      The 19th Cross Straits Symposium on Energy and Environmental Science and Technology (CSS-EEST19), Fukuoka
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Computational design of DNAs: property control via elongation method2017

    • Author(s)
      Yuuichi Orimoto and Yuriko Aoki
    • Organizer
      The 44th International Symposium on Nucleic Acids Chemistry (ISNAC2017), Tokyo
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 生体分子の反応機構解明と機能設計を目指した量子化学的手法開発とその応用2017

    • Author(s)
      折本 裕一、汐見 彩花、青木 百合子
    • Organizer
      第11回分子科学討論会、仙台
    • Related Report
      2017 Research-status Report
  • [Presentation] Elongation法による生体高分子の効率的構造最適化および反応解析法2017

    • Author(s)
      青木 百合子、水上 渉、伊藤 正浩、折本 裕一
    • Organizer
      第11回分子科学討論会、仙台
    • Related Report
      2017 Research-status Report
  • [Presentation] メタロセン触媒重合の構造制御機構の解明と超効率的計算手法によるポリマー特性の解析2017

    • Author(s)
      白根 聡、折本 裕一、青木 百合子
    • Organizer
      第11回分子科学討論会、仙台
    • Related Report
      2017 Research-status Report
  • [Presentation] Theoretical approach to the property and reaction design of DNA/proteins by through-space/bond interaction analysis and elongation method2016

    • Author(s)
      Yuuichi Orimoto and Yuriko Aoki
    • Organizer
      The 43th International Symposium on Nucleic Acids Chemistry (ISNAC2016)
    • Place of Presentation
      Kumamoto(JAPAN)、熊本大学 工学部百周年記念館
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 酵素反応機構解明のための軌道相互作用解析法の開発と応用2016

    • Author(s)
      折本 裕一、青木 百合子
    • Organizer
      第10回分子科学討論会
    • Place of Presentation
      神戸、神戸ファッションマート
    • Related Report
      2016 Research-status Report
  • [Book] “Quantum chemical approach for organic ferromagnetic material design”, SPRINGER BRIEFS IN MOLECULAR SCIENCE, ELECTRICAL AND MAGNETIC PROPERTIES OF ATOMS, MOLECULES, AND CLUSTERS2017

    • Author(s)
      Yuriko Aoki, Yuuichi Orimoto and Akira Imamura
    • Total Pages
      138
    • Publisher
      Springer International Publishing
    • ISBN
      9783319498270
    • Related Report
      2017 Research-status Report

URL: 

Published: 2015-07-14   Modified: 2020-03-30  

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