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Electronic Function Simulation of Surface Coordination Space

Research Project

Project/Area Number 16074213
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionKumamoto University

Principal Investigator

SUGIMOTO Manabu  Kumamoto University, Graduate School of Science and Technology, Associate Professor (80284735)

Project Period (FY) 2004 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥10,300,000 (Direct Cost: ¥10,300,000)
Fiscal Year 2007: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2006: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2005: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2004: ¥2,200,000 (Direct Cost: ¥2,200,000)
KeywordsCoordination Space / Quantum Chemistry / Thecoretical Chemistry / Electronic Structure / Density Functional Theory / Coordinalion Chemistry / Metal Complex / Bioinorganic Chemistry / 分子形状 / 分子設計 / 計算化学 / 電子状態理論 / 表面配位空間 / 電気特性 / 分子ワイヤ / 太陽電池
Research Abstract

Electronic structure methods were applied to theoretically investigate electronic functions of surface-coordination space. In this project, we studied current-voltage (I-V) characteristics of coordination compounds between metal electrodes, topological analysis of molecular surfaces, optical properties of CdS nanoclusters, electrochemical reductive elimination of pyridine thiol on the Au Surface. We applied the nonequilibrium Green's function theory to the I-V characteristics of Pt acetylide compounds between two metal electrodes. The one-dimensional chain electrodes of Au and Li were investigated. For the Au chain electrode, we predicted that the electric current is appreciably enhanced. This is due to the fact that the Fermi level of the electrode is very close to the HOMO level of the Pt compound. On the molecular surface analysis, we developed a new method to characterize topological features of molecular surfaces. In our approach, we introduce an ion as a probe. The molecular surface is defined on the basis of the interaction energy between the probe ion and the target molecule. By using this computational method, the shape of the inner surface of a cyclic crown ether was investigated. On the CdS nanoclusters, we carried out electronically excited state calculations to investigate how the electronic spectra were influenced by the surface coordination by organic molecules.
On the electrochemical reductive elimination, we showed that the elimination voltage is well correlated to the Au-S binding energy of a surface. In addition to these works, some collaborative studies were carried out: (i) electronic structure and optical properties of metal cluster compounds, Structures of Fe-salen complexes were computationally investigated. The Cu model compounds for the nitride reductase were investigated to understand the coordination geometries and binding energy between Cu and NO2.

Report

(5 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (26 results)

All 2007 2006 2005 2004

All Journal Article (21 results) (of which Peer Reviewed: 5 results) Presentation (5 results)

  • [Journal Article] Metal Ion Selectivity of Bifunctional Cation Exchange Resins Containing Phosphonate and Sulfonate Derived from CrosslinkedChloromethyl styrene-styrene Copolymers2007

    • Author(s)
      A. Jyo
    • Journal Title

      J. Ion Exchange 18

      Pages: 198-203

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Electronic Response Analysis on Supramolecular Functions. Electronic-Structure Modulation and Molecular Recognition2006

    • Author(s)
      M. Sugimoto
    • Journal Title

      Lecture Series on Computer and Computational Sciences 6

      Pages: 472-481

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Trigonal-Bipyramidal Geometry Induced by an External Water Ligand in a Sterically Hindered Iron Salen Complex, Related to the Active Site of Protocatechuate 3, 4-Dioxygenase2006

    • Author(s)
      T. Kurahashi, K. Oda, M. Sugimoto, T. Ogura, H. Fujii
    • Journal Title

      Inorganic Chemistry 45

      Pages: 7709-7721

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Thermnochromic Triangular [MCo2] (M =Rh, Ir, Ru)Clusters Containing a Planar Metalladithiolene Ring in η3 Coordination2006

    • Author(s)
      N. Nakagawa, T. Yamada, M. Murata, M, Sugimoto, H. Nishihara
    • Journal Title

      Inorganic Chemistry 45

      Pages: 14-16

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Electronic Response Analysis on Supramolecular Functions. Electronic-Structure Modulation and Molecular Recognition2006

    • Author(s)
      M. Sugiaoto
    • Journal Title

      Lecture Series on Computer and Computational Sciences 6

      Pages: 472-481

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Trigonal-Bipyramidal Geometry Induced by an External Water Ligand in a Sterically Hindered Iron Salen Complex, Related to the Active Site of Protocatechuate 3, 4-Dioxygenase2006

    • Author(s)
      T Kurahashi, K. Oda, M. Sugimoto, T. Ogura, H. Fujii
    • Journal Title

      Inorg. Chem. 45

      Pages: 7709-7721

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Thermochromic Triangular [HCo2] (M = Rh, Ir, Ru) Clusters Containing a Planar Metalladithiolene Ring in ・3 Coordination2006

    • Author(s)
      N. Nakagawa, T. Yamada, M. Murata, M. Sugimoto, H. Nishihara
    • Journal Title

      Inorg. Chem. 45

      Pages: 14-16

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Thermochromic Triangular [MCo_2]_3(M = Rh, Ir, Ru) Clusters Containing a Planar Metalla-dithiolene Ring in η Coordination2006

    • Author(s)
      N.Nakagawa, T.Yamada, M.Murata, M.Sugimoto, H.Nishihara
    • Journal Title

      Inorganic Chemistry 45・1

      Pages: 14-16

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Trigonal-Bipyramidal Geometry Induced by an External Water Ligand in a Sterically Hindered Iron Salen Complex, Related to the Active Site of Protocatechuate 3,4-Dioxygenase2006

    • Author(s)
      T.Kurahashi, K.Oda, M.Sugimoto, T.Ogura, H.Fujii
    • Journal Title

      Inorganic Chemistry 45・9

      Pages: 7709-7721

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Electronic Response Analysis on Supramolecular Functions. Electronic-Structure Modulation and Molecular Recognition2006

    • Author(s)
      M.Sugimoto
    • Journal Title

      Lecture Series on Computer and Computational Sciences 6

      Pages: 472-481

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Thermochromic Triangular [MCo2] (M =Rh, Ir, Ru) Clusters Containing a Planar Metalladithiolene Ring in η^3 Coordination2006

    • Author(s)
      N.Nakagawa, T.Yamada, M.urata, M.Sugimoto, H.Nishihara
    • Journal Title

      Inorganic Chemistry 45(1)

      Pages: 14-14

    • Related Report
      2005 Annual Research Report
  • [Journal Article] CuI and CuII complexes containing nitrite and tridentate aromatic amine ligand as models for the substrate-binding type-2 Cu site of nitrite reductase2005

    • Author(s)
      H. Yokoyama, K. Yamaguchi, M. Sugimoto, S. Suzuki
    • Journal Title

      European Journal of Inorganic Chemistry

      Pages: 1435-1441

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] CuI and CuII complexes containing nitrite and tridentate aromatic amine ligand as models for the substrate-binding type-2 Cu site of nitrite reductase2005

    • Author(s)
      H. Yokoyama, K. Yamaguchi, M. Sugimoto, S. Suzuki
    • Journal Title

      Eur. J. of Inorg. Chem.

      Pages: 1435-1441

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Cu^I and Cu^<II> complexes containing nitrite and tridentate aromatic amine ligand as models for the substrate-binding type-2 Cu site of nitrite reductase2005

    • Author(s)
      H.Yokoyama K.Yamaguchi, M.Sugimoto, S.Suzuki
    • Journal Title

      European Journal of Inorganic Chemistry 8

      Pages: 1435-1435

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Photocontrollable tristability of a dithiolato-bipyridine-Pt (ii) complex molecule containing two azobenzene moieties2005

    • Author(s)
      R.Sakamoto, M.Murata, S.Kume, H.Sampei, M.Sugimoto, H.Nishihara
    • Journal Title

      Chemical Communications 9

      Pages: 1215-1215

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Photon-, Electron-, and Proton-Induced Isomerization Behavior of Ferrocenylazobenzenes2005

    • Author(s)
      A.Sakamoto, A.Hirooka, K.Namiki, M.Kurihara, M.Murata, M.Sugimoto, H.Nishihara
    • Journal Title

      Inorganic Chemistry 44(21)

      Pages: 7547-7547

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 色素増感太陽電池に使われる色素材料の励起状態と励起スペクトル2005

    • Author(s)
      杉本 学
    • Journal Title

      ファインケミカル 34(2)

      Pages: 38-38

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Photo-controllable tristability of a dithiolato-bipyridine-Pt(ii) complex molecule containing two azobenzene moieties.2005

    • Author(s)
      M.Sugimoto et al.
    • Journal Title

      Chemical Communications 9

      Pages: 1215-1215

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Alkyl group dependence of C-Si reductive eliminations from alkyl(silyl) Pt(II) complexes : a density functional study.2004

    • Author(s)
      M.Sugimoto et al.
    • Journal Title

      Journal of Organometallic Chemistry 689(13)

      Pages: 2236-2236

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Theoretical Study of the Cp2Zr-Catalyzed Hydrosilylation of Ethylene. Reaction Mechanism Including New σ-Bond Activation.2004

    • Author(s)
      M.Sugimoto et al.
    • Journal Title

      Journal of the American Chemical Society 126(10)

      Pages: 3332-3332

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A square cyclic porphyrin dodecamer : Synthesis and single-molecule characterization.2004

    • Author(s)
      M.Sugimoto et al.
    • Journal Title

      Chemistry Letters 33(5)

      Pages: 578-578

    • NAID

      10012943771

    • Related Report
      2004 Annual Research Report
  • [Presentation] Surface Topology of Molecular Coordination Space for Host-Guest Interaction. A Computational Analysis2007

    • Author(s)
      M. Sugimoto
    • Organizer
      Third International Symposium on Chemistry of Coordination Space
    • Place of Presentation
      兵庫県淡路市
    • Year and Date
      2007-12-11
    • Related Report
      2007 Annual Research Report
  • [Presentation] Theoretical Modeling and Density-Functional-Theory Calculations on Ion Selectivity in Cation Exchange Resins2007

    • Author(s)
      M. Sugimoto
    • Organizer
      The 4th International Conference on Ion Exchange (ICIE'07)
    • Place of Presentation
      千葉県千葉市
    • Year and Date
      2007-10-18
    • Related Report
      2007 Annual Research Report
  • [Presentation] Computational Shape Analysis for Designing Host and Guest Molecules in Molecular Storage2007

    • Author(s)
      M. Sugimoto
    • Organizer
      1st Asian Conference on Coordination Chemistry
    • Place of Presentation
      愛知県岡崎市
    • Year and Date
      2007-07-31
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Computational Shape Analysis for Designing Host and Guest Molecules in Molecular Storage2007

    • Author(s)
      M. Sugimoto
    • Organizer
      1st Asian Conference on Coordination Chemistry (ACCC2007)
    • Place of Presentation
      Okazaki
    • Year and Date
      2007-07-31
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Computational Shape Analysis for Designing Host and Guest Molecules in Molecular Storage2007

    • Author(s)
      M. Sugimoto
    • Organizer
      1st Asian Conference on Coordination Chemistry (ACCC2007)
    • Place of Presentation
      愛知県岡崎市
    • Year and Date
      2007-07-31
    • Related Report
      2007 Annual Research Report

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Published: 2004-04-01   Modified: 2018-03-28  

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