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Functional Mechanism and Structural Organization of Biological Macromolecular Assemblies

Research Project

Project/Area Number 16087101
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionOsaka University

Principal Investigator

TSUKIHARA Tomitake  Osaka University, 蛋白質研究所, 特任研究員 (00032277)

Co-Investigator(Kenkyū-buntansha) NAMBA Keiichi  大阪大学, 大学院・生命機能研究科, 教授 (30346142)
FUKUMORI Yoshihiro  金沢大学, 自然システム学系, 教授 (60135655)
ARISAKA Fumio  東京工業大学, 大学院・生命理工学研究科, 教授 (80133768)
YOSHIKAWA Shinya  兵庫県立大学, 大学院・生命理学研究科, 教授 (40068119)
OOMURA Toshihiro  農業・食品産業技術総合研究機構, 中央農業総合研究センター, チーム長 (20355499)
SATO Chikara  独立行政法人産業技術総合研究所, 脳神経情報研究部門, 研究グループ長 (00357146)
KITAO Akio  東京大学, 分子細胞生物学研究所, 准教授 (30252422)
NAGATA Koji  東京大学, 農学生命科学研究科, 准教授 (30280788)
KAMIYA Nobuo  大阪市立大学, 大学院・理学研究科, 教授 (60152865)
Project Period (FY) 2004 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥48,900,000 (Direct Cost: ¥48,900,000)
Fiscal Year 2009: ¥8,900,000 (Direct Cost: ¥8,900,000)
Fiscal Year 2008: ¥8,900,000 (Direct Cost: ¥8,900,000)
Fiscal Year 2007: ¥8,900,000 (Direct Cost: ¥8,900,000)
Fiscal Year 2006: ¥8,900,000 (Direct Cost: ¥8,900,000)
Fiscal Year 2005: ¥8,900,000 (Direct Cost: ¥8,900,000)
Fiscal Year 2004: ¥4,400,000 (Direct Cost: ¥4,400,000)
Keywords生体超分子 / 構造 / 機能 / X線結晶構造解析 / 電子線構造解析 / 電子顕微鏡 / 構造機能理論計算 / X 線結晶構造解析
Research Abstract

We have developed X-ray crystallographic method, electron microscopic method, and their combined method to determine structures of biological macromolecular assemblies including non-crystalline substances. Theoretical method to predict structural intermediate was developed to understand reaction mechanism. Applying these methods, biochemists have successfully elucidated regulation mechanisms of biological macromolecular assemblies.

Report

(7 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (263 results)

All 2010 2009 2008 2007 2006 2005 2004 Other

All Journal Article (136 results) (of which Peer Reviewed: 79 results) Presentation (105 results) Book (14 results) Remarks (4 results) Patent(Industrial Property Rights) (4 results)

  • [Journal Article] Mechanical unfolding of bacterial flagellar filament protein by molecular dynamics simulation2010

    • Author(s)
      Choon-Peng Chng, Akio Kitao
    • Journal Title

      J.Mol.Graph.Model. 28

      Pages: 548-554

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of the cytoplasmic domain of FlhA and implication for flagellar type III protein export2010

    • Author(s)
      Yumiko Saijyo-Hamano, et al.
    • Journal Title

      Molecular Microbiology 76

      Pages: 260-268

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A high resolution structure of the pre-microRNA nuclear export machinery.2009

    • Author(s)
      Chimari Okada, Yamashita Eiki, Soo Jae Lee, Satoshi Shibata, Jun Katahira, Atsushi Nakagawa, *Yoshihiro Yoneda, *Tomitake Tsukihara
    • Journal Title

      Science 326

      Pages: 1275-1279

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structure of the connexin-26 gap junction channel at 3. 5 A resolution.2009

    • Author(s)
      Shoji Maeda, So Nakagawa, Michihiro Suga, Eiki Yamashita, Atsunori Oshima, Yoshinori Fujiyoshi, *Tomitake Tsukihara
    • Journal Title

      Nature 458

      Pages: 597-602

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The structure of rat liver vault at 3. 5 A resolution.2009

    • Author(s)
      Hideaki Tanaka, Koji Kato, Eiki Yamashita, Tomoyuki Sumizawa, Yong Zhou, Min Yao, Kenji Iwasaki, Masato Yoshimura, *Tomitake Tsukihara
    • Journal Title

      Science 323

      Pages: 384-388

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Specific arrangement of α-helical coiled coils in the core domain of the bacterial flagellar hook for the universal joint function.2009

    • Author(s)
      Fujii, T., Kato, T., *Namba, K.
    • Journal Title

      Structure 17

      Pages: 1485-1493

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Reconstruction of the P2X2 receptor revealed a vase-shaped structure with lateral tunnels above the membrane.2009

    • Author(s)
      Mio, K., Ogura, T., Yamamoto, T., Hiroaki, Y., Fujiyoshi, Y., Kubo, Y., Sato, C.
    • Journal Title

      Structure 17

      Pages: 266-275

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Selective and direct inhibition of TRPC3 channels underlies biological activities of a pyrazole compound.2009

    • Author(s)
      Kiyonaka, S., Kato, K., Nishida, M., Mio, K., Numaga, T., Sawaguchi, Y., Yoshida, T., Wakamori, M., Mori, E., Numata, T., Ishii, M., Takemoto, H., Ojida, A., Watanabe, K., Uemura, A., Kurose, H., Morii, T., Kobayashi, T., Sato, Y., Sato, C., Hamachi, I., Mori, Y.
    • Journal Title

      Proc. Natl. Acad. Sci. U S A 106

      Pages: 5400-5405

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Tetrameric Orai1 is a teardrop-shaped molecule with a long, tapered cytoplasmic domain.2009

    • Author(s)
      Maruyama, Y., Ogura, T., Mio, K., Kato, K., Kaneko, T., Kiyonaka, S., Mori, Y., *Sato, C.
    • Journal Title

      J. Biol. Chem. 284

      Pages: 13676-13685

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Peroxide Bridge between Fe and Cu Ions in the O2 Reduction Site of Fully Oxidized Cytochrome c Oxidase could suppress the Proton Pump2009

    • Author(s)
      Hiroshi Aoyama, Kazumasa Muramoto, Kyoko Shinzawa-Itoh, Kunio Hirata, Eiki Yamashita, Tomitake Tsukihara, Takashi Ogura, *Shinya Yoshikawa
    • Journal Title

      Proc. Natl. Acad. Sci. USA 106

      Pages: 2165-2169

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Location of chloride and its possible functions in oxygen-evolving photosystem II revealed by X-ray crystallography.2009

    • Author(s)
      Keisuke Kawakami, Yasufumi Umena, *Nobuo Kamiya, *Jian-Ren Shen
    • Journal Title

      Proc. Natl. Acad. Sci. USA 106

      Pages: 8567-8572

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Calcium ions are required for the enhanced thermal stability of the light-harvesting-reaction center core complex from thermophilic purple sulfur bacterium Thermochromatium tepidum.2009

    • Author(s)
      Kimura, Y., Yu, L. -J., Hirano, Y., Suzuki, H., Wang, Z. -Y.
    • Journal Title

      J. Biol. Chem. 284

      Pages: 93-99

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Associationof Rice gall dwarf virus with microtubules is necessary for viral release from cultured insect vector cells.2009

    • Author(s)
      Wei, T., Uehara-Ichiki, T., Miyazaki, N., Hibino, H., Iwasaki, K., Omura, T.
    • Journal Title

      Journal of Virology 83

      Pages: 10830-10835

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A high resolution structure of the pre-microRNA nuclear export machinery2009

    • Author(s)
      Chimari Okada
    • Journal Title

      Science 326

      Pages: 1275-1279

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A description of the structural determination procedures of a gap junction channel at 3.5 A resolution.2009

    • Author(s)
      Michihiro Suga
    • Journal Title

      Acta Crystallogr D65

      Pages: 758-766

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of the connexin-26 gap junction channel at 3.5A resolution.2009

    • Author(s)
      Shoji Maeda
    • Journal Title

      Nature 458

      Pages: 597-602

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Substrate binding induces structural changes in cytochrome p450cam.2009

    • Author(s)
      Keisuke Sakurai
    • Journal Title

      Acta Cryst.F 65

      Pages: 80-83

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A peroxide bridge between Fe and Cu ions in the O_2 reduction site of fully oxidized cytochrome c oxidase suppresses the proton pump.2009

    • Author(s)
      Hiroshi Aoyama
    • Journal Title

      Proc.Natl.Acad.Sci.USA 106

      Pages: 2165-2169

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The structure of rat liver vault at 3.5A resolution.2009

    • Author(s)
      Hideaki Tanaka
    • Journal Title

      Science 323

      Pages: 384-388

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multiple Markov transition matrix method : Obtaining the stationary probability distribution from multiple simulations2009

    • Author(s)
      Shun Sakuraba, Akio Kitao
    • Journal Title

      J.Comp.Chem. 30

      Pages: 1850-1858

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Collective Dynamics of Periplasmic Glutamine Binding Protein upon Domain Closure2009

    • Author(s)
      Hannes H.Loeffler, Akio Kitao
    • Journal Title

      Biophys J. 97

      Pages: 2541-2549

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of the connexin-26 gap junction channel at 3.5 A resolution2009

    • Author(s)
      S. Maeda
    • Journal Title

      Nature (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Substrate binding induces structural changes in cytochrome p450cam2009

    • Author(s)
      K. Sakurai
    • Journal Title

      Acta Cryst. F 65

      Pages: 80-83

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump2009

    • Author(s)
      H. Aoyama
    • Journal Title

      Proc. Natl. Acad. Sci. USA 106

      Pages: 2165-2169

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The structure of rat liver vault at 3.5 angstrom resolution2009

    • Author(s)
      H. Tanaka
    • Journal Title

      Science 323

      Pages: 384-388

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reconstruction of the P2X_2 receptor revealed a vase-shaped structure with lateral tunnels above the membrane2009

    • Author(s)
      Mio, K.
    • Journal Title

      Structure (in press)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of iron transporters expressed in the magnetotactic bacterium Magnetospirillum magnetotacticum2009

    • Author(s)
      Taoka A
    • Journal Title

      Curr. Microbiol 58

      Pages: 177-181

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A vault ribonucleoprotein particle exhibiting 39-fold dihedral symmetry.2008

    • Author(s)
      Koji Kato, Hideaki Tanaka, Tomoyuki Sumizawa, Masato Yoshimura, Eiki Yamashita, Kenji Iwasaki, Tomitake Tsukihara
    • Journal Title

      Acta Crystallogr. D 64

      Pages: 525-531

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structure of human monoamine oxidase at 2. 2 A resolution: The control of opening the entry for substrates/inhibitors.2008

    • Author(s)
      Se-Young Son, Jichun Ma, Youhei Kondou, Masato Yoshimura, Eiki Yamashita, Tomitake Tsukihara
    • Journal Title

      Proc. Natl. Acad. USA 105

      Pages: 5739-5744

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY.2008

    • Author(s)
      Kojima, S., Shinohara, A., Terashima, H., Yakushi, T., Sakuma, *M., Homma, M., Namba, K., *Imada, K.
    • Journal Title

      PNAS 105

      Pages: 7696-7701

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular motors of the bacterial flagella.2008

    • Author(s)
      Minamino, T., Imada, K., Namba, K.
    • Journal Title

      Current Opinion in Structural Biology 18

      Pages: 693-701

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Distinct roles of the FliI ATPase and proton motive force in bacterial flagellar protein export.2008

    • Author(s)
      Minamino, T., Namba, K.
    • Journal Title

      Nature 451

      Pages: 485-488

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The motor protein prestin is a bullet-shaped molecule with inner cavities.2008

    • Author(s)
      Mio, K., Kubo, Y., Ogura, T., Yamamoto, T., Arisaka, F., Sato, C.
    • Journal Title

      J. Bol. Chem. 283

      Pages: 1137-1145

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Endomembranes and myosin mediate assembly into tubules of Pns10 of Rice dwarf virus and intercellular spreading of the virus in cultured insect vector cells.2008

    • Author(s)
      Wei, T., Shimizu, T., * Omura, T.
    • Journal Title

      Virology 372

      Pages: 349-356

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Calcium ions are involved in the unusual red-shift of the light-harvesting 1 Qy transition of the core complex in thermophilic purple sulfur bacterium Thermochromatium tepidum.2008

    • Author(s)
      Kimura, Y., Hirano, Y., Yu, L. -J., Suzuki, H., Kobayashi, M., * Wang, Z. -Y.
    • Journal Title

      J. Biol. Chem. 283

      Pages: 13867-13873

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural analysis of Arabidopsis CnfU protein : an iron-sulfur cluster biosynthetic scafold in chloroplasts2008

    • Author(s)
      T. Yabe
    • Journal Title

      J. Mol. Biol 381

      Pages: 160-173

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A vault ribomicleoprotein particle exhibiting 39-fold dihedral symmetry2008

    • Author(s)
      Koji Kato
    • Journal Title

      Acta Crystallogr. D 64

      Pages: 525-531

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of human monoamine oxidase at 2.2, A resolution : The control of opening the entry for substrates/inhibitors2008

    • Author(s)
      Se-Young, Son
    • Journal Title

      Proc. Natl. Acad. USA 105

      Pages: 5739-5744

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Iron-sulfur cluster N5 is coordinated by a HXXXCXXCXXXXXC motife in the NuoG subunit of E. coli NADH : quinine oxidoreductase(Complex I)2008

    • Author(s)
      Nakamura-Ogiso, E
    • Journal Title

      J. Biol. Chem 283

      Pages: 25979-25987

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional role of Coenzyme Q in the energy coupling of NADH-CoQ oxidoreductase(Complex I): Stabilization of the semiquinone state with application of inside-positive membrane potential to proteoliposomes2008

    • Author(s)
      Ohnishi, To
    • Journal Title

      Biofctor 32

      Pages: 13-22

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RECK forms cowbell-shaped dimers and inhibits MMP -catalyzed cleavage of fibronectin2008

    • Author(s)
      Omura, A.
    • Journal Title

      J. Biol. Chem 284(6)

      Pages: 3461-3469

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three-dimensional reconstruction of human CFTR chloride channel revealed an ellipsoidal structure with orifices beneath the putative transmembrane domain2008

    • Author(s)
      Mio, K.
    • Journal Title

      J. Biol. Chem 283(44)

      Pages: 30300-30310

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin2008

    • Author(s)
      N. Numoto
    • Journal Title

      Biochemistry 47

      Pages: 11231-11238

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of the partially unliganded met state of 400 kDa hemoglobin : insights into ligand-induced structural changes of giant hemoglobins2008

    • Author(s)
      Numoto N
    • Journal Title

      Proteins 73(1)

      Pages: 113-125

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits.2007

    • Author(s)
      Imada, K., Minamino, T., Tahara, A., *Namba, K.
    • Journal Title

      Proc. Nat'l Acad. Sci. U.S.A. 104

      Pages: 485-490

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Three-dimensional reconstruction using transmission EM reveals a swollen, bell-shaped structure of TRPM2 cation channel.2007

    • Author(s)
      Maruyama, Y., Ogura, T., Mio, K., Kiyonaka, S., Kato, K., Mori, Y., *Sato, C.
    • Journal Title

      J. Biol. Chem. 282(51)

      Pages: 36961-36970

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] TRIC channels are essential for Ca2+ handling in intracellular stores.2007

    • Author(s)
      Yazawa, M., Ferrante, C., Feng, J., Mio, K., Ogura, T., Zhang, M., Lin, P-H., Pan, Z., Komazaki, S., Kato, K., Nishi, M., Zhao, X., Weisleder, N., Sato, C., Ma, J., *Takeshima, H.
    • Journal Title

      Nature 448

      Pages: 78-82

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Picosecond fluctuating protein energy landscape mapped by pressure-temperature molecular dynamics simulation.2007

    • Author(s)
      Meinhold, L., Smith, J.C., Kitao, A., *Zewail, A.H.
    • Journal Title

      PNAS. 104(44)

      Pages: 17261-17265

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Entry of Rice dwarf virus into cultured cells of its insect vector involves clathrin-mediated endocytosis.2007

    • Author(s)
      Wei, T., Chen, H., Ichiki-Uehara, T., Hibino, H.,, * Omura, T.
    • Journal Title

      Journal of Virology 81

      Pages: 7811-7815

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structures and physiological roles of thirteen lipids of bovine heart cytochrome c oxidase2007

    • Author(s)
      Shinzawa-Itoh, K., Aoyama, H., Muramoto, K., Terada, H., Kurauchi, T., Tadehara, Y., Yamasaki, A., Sugimura, T., Kurono, S., Tsujimoto, K., Mizushima, T., Yamashita, E., Tsukihara, T., *Yoshikawa, S.
    • Journal Title

      EMBO J. 26

      Pages: 1713-1725

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A histidine residue acting as a controlling site for dioxygen reduction and proton pumping by cytochrome c oxidase2007

    • Author(s)
      Muramoto, K., Hirata, K., Shinzawa-Itoh, K., Yoko-o, S., Yamashita, E., Aoyama, H., Tsukihara, T., *Yoshikawa, S.
    • Journal Title

      Proc. Nat Acad. Sci. USA 104

      Pages: 7881-7886

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A histidine residue as a controlling site for dioxygen reduction and protonpumpping of cytochrome c oxidase.2007

    • Author(s)
      Muramoto, K.
    • Journal Title

      Proc. Natl. Acad. USA 104

      Pages: 7881-7886

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The crystal structure of a virus-like particle from the hyperthermophilic archaeon Pyrococcus furiosus provides insight into the evolution of viruses.2007

    • Author(s)
      Akita, F.
    • Journal Title

      J. Mol. Biol. 368

      Pages: 1469-1483

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structures and physiological roles of all the integral lipids of bovine heart cytochrome c oxidase.2007

    • Author(s)
      Shinzawa-Itoh, K.
    • Journal Title

      EMBO J. 26

      Pages: 1713-1725

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Proton-Pumping Pathway of Bovine Heart Cytochrome c Oxidase.2007

    • Author(s)
      Shimokata, T.
    • Journal Title

      Proc. Natl. Acad. USA 104

      Pages: 4200-4205

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gap compression/extension mechanism of bacterial flagellar hook as the molecular universal joint.2007

    • Author(s)
      Furuta, T
    • Journal Title

      J. Struct. Biol. 157

      Pages: 481-490

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Modeling of the F-actin structure.2007

    • Author(s)
      Oda, T.
    • Journal Title

      Adv. Exp. Med. Biol. 592

      Pages: 385-401

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PAX6 and SOX2-dependent regulation of the Sox2 enhancer N-3 involved in embryonic visual system development.2007

    • Author(s)
      Inoue, M.
    • Journal Title

      Genes to Cells 12

      Pages: 1049-1061

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure and quantum chemical analysis of NAD+-dependent isocitrate dehydrogenase: Hydride transfer and co-factor specificity.2007

    • Author(s)
      Imada, K.
    • Journal Title

      Proteins: Structure, Function, and Bioinformatics 70

      Pages: 63-71

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distinct roles of the ATPase and proton motive force in bacterial flagellar protein export.2007

    • Author(s)
      Minamino, T.
    • Journal Title

      Nature 451

      Pages: 485-488

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Oxygenation Properties of Extracellular Giant Hemoglobin from Oligobrachia mashikoi.2007

    • Author(s)
      Aki, Y
    • Journal Title

      Biochem. Biophys. Res. Commun 360

      Pages: 673-678

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Actual distribution of bacteriocytes in the trophosome of a beard worm (Oligobrachia mashikoi, Siboglinidae, Annelida):Clarification using whole-mount in situ hybridization2007

    • Author(s)
      Deguchi, M.
    • Journal Title

      Acta Zoologica 88

      Pages: 129-135

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] From structure of the complex to understanding of the biology2007

    • Author(s)
      Michael, G・Rossmann
    • Journal Title

      Acta Cryst. D63

      Pages: 9-16

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Detection of structural changes in a cofactor binding protein by using a wheat germ cell-free protein synthesis system coupled with unnatural amino acid probing2007

    • Author(s)
      Abe, M.
    • Journal Title

      PROTEINS: Structure, Function, and Bioinformatics 67(3)

      Pages: 643-652

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The neck of bacteriophage T4 is a ring-like structure formed by a hetero-oligomer of gp13 and gp142007

    • Author(s)
      Akhter, T.
    • Journal Title

      Biochim Biophys Acta 1774(8)

      Pages: 1036-1043

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reversible and Irreversible Coiled Coils in the Stalk Domain of ncd Motor Protein2007

    • Author(s)
      Makino, T.
    • Journal Title

      Biochemistry 46

      Pages: 9523-9532

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An arthropod cuticular chitin-binding protein endows injured sites with transglutaminase-dependent mesh2007

    • Author(s)
      Matsuda, Y.
    • Journal Title

      J Biol Chem 282(52)

      Pages: 37316-37324

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Resonance Raman spectra of the FMN of the bovine heart NADH:coenzyme Q oxidoreductase, the largest membrane protein in the mitochondrial respiratory system2007

    • Author(s)
      Sugiyama, H.
    • Journal Title

      J. Bioenrg. Biomembr 39

      Pages: 145-148

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The proton pumping pathway of bovine heart cytochrome c oxidase.2007

    • Author(s)
      K.Shimokata
    • Journal Title

      Proc. Natl. Acad. Sci. USA 104

      Pages: 4200-4205

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The type III flagellar export specificity switch is dependent on FliK ruler and a molecular clock.2007

    • Author(s)
      N.Moriya
    • Journal Title

      J. Mol. Biol. 359

      Pages: 466-477

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits.2007

    • Author(s)
      K.Imada
    • Journal Title

      Proc. Nat'l. Acad. Sci. U.S.A. 104

      Pages: 485-490

    • Related Report
      2006 Annual Research Report
  • [Journal Article] From structure of the complex to understanding of the biology.2007

    • Author(s)
      M.G.Rossmann
    • Journal Title

      Acta Cryst. D63

      Pages: 9-16

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Actual distribution of bacteriocytes in the trophosome of a beard worm (Oligobrachia mashikoi, Siboglinidae, Annelida) : Clarification using whole-mount in situ hybridization.2007

    • Author(s)
      M.Deguchi
    • Journal Title

      Acta Zoologica (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Structures and physiological roles of all the integral lipids of bovine heart cytochrome c oxidase.2007

    • Author(s)
      K.Shinzawa-Itoh.
    • Journal Title

      EMBO J. (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] A histidine residue acting as a controlling site for dioxygen reduction and proton pumping by cytochrome c oxidase.2007

    • Author(s)
      K.Muramoto
    • Journal Title

      Proc. Natl. Acad. Sci. USA (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures.2006

    • Author(s)
      *Kitao, A., Yonekura, K., Maki-Yonekura, S., Samatey, F.A., Imada, K., Namba, K., Go, N.
    • Journal Title

      Proc. Nat'l. Acad. Sci. U.S.A. 103

      Pages: 4894-4899

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures.2006

    • Author(s)
      *Kitao, A., Yonekura, K., Maki-Yonekura, S., Samatey, F.A., Imada, K., Namba, K., Go, N
    • Journal Title

      Proc. Natl. Acad. Sci. USA 103

      Pages: 4894-4899

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The Pns 12 protein of Rice dwarf virus is essential for formation of ivroplasms and nucleationof viral assembly complexes.2006

    • Author(s)
      Wei, T., Shimizu, T., Hagiwara, K., Kikuchi, A., Moriyasu, Y., Suzuki N., Chen, H.,, * Omura, T.
    • Journal Title

      Journal of General Vrology 87

      Pages: 429-438

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Pns4 of Rice dwarf virus is a phosphoprotein, localized around the viroplasm matrix and forms minitubules.2006

    • Author(s)
      Wei, T., Kikuchi, A., Suzuki, N., Shimizu, T., Hagiwara, K., Chen, H., * Omura, T.
    • Journal Title

      Archives of Virology 151

      Pages: 1701-1712

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The asymmetric IscA homodimer with an exposed [2Fe-2S] cluster suggests the structural basis of the Fe-S cluster biosynthetic scaffold.2006

    • Author(s)
      K.Morimoto
    • Journal Title

      J Mol Biol. 360

      Pages: 117-132

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Structure of coenzyme A-disulfide reductase from Staphylococcus aureus at 1.54 A resolution.2006

    • Author(s)
      T.C.Mallet
    • Journal Title

      Biochemistry 45

      Pages: 11278-11289

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Switch interactions control energy frustration and multiple flagellar filament structures.2006

    • Author(s)
      A.Kitao
    • Journal Title

      Proc. Nat'l. Acad. Sci. U.S.A. 103

      Pages: 4894-4899

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The Pns 12 protein of Rice dwarf virus is essential for formation of ivroplasms and nucleationof viral assembly complexes.2006

    • Author(s)
      T.Wei
    • Journal Title

      Journal of General Virology 87

      Pages: 429-438

    • Related Report
      2006 Annual Research Report
  • [Journal Article] In vitro but not in planta encapsidation of Rice gall dwarf virus core particles by the outer capsid P8 protein of Rice dwarf virus expressed in transgenic rice plants.2006

    • Author(s)
      K.Hagiwara
    • Journal Title

      Journal of General Plant Patholgoy 72

      Pages: 186-189

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The spread of Rice dwarf virus among cells of its insect vector exploits virus-induced tubular structures.2006

    • Author(s)
      T.Wei
    • Journal Title

      Journal of Virology 80

      Pages: 8593-8602

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Association and dissociation of the cell puncturing complex of bacteriophageT4 is controlled by both pH and temperature.2006

    • Author(s)
      S.Sarkar
    • Journal Title

      Biochim. Biophys. Acta 1764

      Pages: 1487-1492

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Bionanotube Tetrapod Assembly by In Situ Synthesis of a Gold Nanocluster with (gp5-His6) 3 from Bacteriophage T4.2006

    • Author(s)
      T.Ueno
    • Journal Title

      Angew. Chem. Int. Ed. 45

      Pages: 4508-4512

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Biogenesis of actin-like bacterial cytoskeletal filaments destined for positioning prokaryotic magnetic organelles.2006

    • Author(s)
      N.Pradel
    • Journal Title

      Proc.Natl.Acad.Sci. USA. 103

      Pages: 17485-17489

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Spatial localizations of Mam22 and Mam12 in the magnetosomes of Magnetospirillum magnetotacticum.2006

    • Author(s)
      A.Taoka
    • Journal Title

      J.Bact. 188

      Pages: 3805-3812

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Reaction mechanism of bovine heart cytochrome c oxidase.2006

    • Author(s)
      S.Yoshikawa
    • Journal Title

      Biochim. Biophys. Acta 1757

      Pages: 395-400

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Electron cryomicroscopic visualization of PomA/B stator units of the sodium-driven flagellar motor in liposomes.2006

    • Author(s)
      Yonekura, K.
    • Journal Title

      Journal of Molecular Biology (In press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] FlhB regulates ordered export of flagellar components via autocleavage mechanism.2006

    • Author(s)
      Ferris, H.U.
    • Journal Title

      Journal of Biological Chemistry 280

      Pages: 41236-41242

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Interactions between C ring proteins and export apparatus components : a possible promotion mechanism of flagellar type III protein export.2006

    • Author(s)
      Gonzalez-Pedrajo, B.
    • Journal Title

      Molecular Microbiology (In press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Ab initio crystal structure determination of spherical viruses that exhibit a centrosymmetric location in the unit cell.2005

    • Author(s)
      J. Taka, H. Naitow, M. Yoshimura, N. Miyazaki, A. Nakagawa, *T. Tsukihara.
    • Journal Title

      Acta Cryst. 61

      Pages: 1099-1106

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Building the atomic model for the bacterial flagellar filament by electron cryomicroscopy and image analysis.2005

    • Author(s)
      *Yonekura, K., Maki-Yonekura, S., *Namba, K.
    • Journal Title

      Structure 13

      Pages: 407-412

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A partial atomic structure for the flagellar hook of Salmonella typhimurium.2005

    • Author(s)
      Shailk T.R., Thomas D.R., Chen J.Z., Samatey F.A., Matsunami. H., Imada K., Namba K., *DeRosier D.J.
    • Journal Title

      Proc. Nat'l Acad. Sci. USA 102

      Pages: 1023-1028

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Control of Bacteriophage T4 Tail Lysozyme Activity During the Infection Process.2005

    • Author(s)
      *Shuji Kanamaru, Yasutaka Ishiwata, Toshiharu Suzuki, Michael G. Rossmann, Fumio Arisaka
    • Journal Title

      J. Mol. Biol. 346

      Pages: 1013-1020

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The tail structure of bacteriophage T4 and its mechanism of contraction.2005

    • Author(s)
      Victor A. Kostyuchenko, Paul R. Chipman, Petr G. Leiman, Fumio Arisaka, Vadim V. Mesyanzhinov, *Michiael G. Rossmann.
    • Journal Title

      Nat Struct Mol Biol. 12

      Pages: 810-813

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi.2005

    • Author(s)
      N. Numoto, T. Nakagawa, A. Kita, Y. Sasayama, *Y. Fukumori, *K. Miki
    • Journal Title

      Proc. Natl. Acad. Sci. USA 102

      Pages: 14521-14526

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ab initio crystal structure determination of spherical viruses that exhibit a centrosymmetric location in the unit cell.2005

    • Author(s)
      J.Taka
    • Journal Title

      Acta Cryst. D61

      Pages: 1099-1106

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Absolute configuration of the hydroxyfarnesylethyl group of haem A, determined by X-ray structural analysis of bovine heart cytochrome c oxidase using methods applicable at 2.8 A resolution.2005

    • Author(s)
      E.Yamashita
    • Journal Title

      Acta Cryst. D61

      Pages: 1373-1377

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Structure of the Central Hub of Bacteriophage Mu Baseplate Determined by X-ray Crystallography of gp44.2005

    • Author(s)
      Y.Kondou
    • Journal Title

      J.Mol.Biol. 352

      Pages: 976-985

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Building the atomic model for the bacterial flagellar filament by electron cryomicroscopy and image analysis.2005

    • Author(s)
      Yonekura, K.
    • Journal Title

      Structure 13

      Pages: 407-412

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A partial atomic structure for the flagellar hook of Salmonella typhimurium.2005

    • Author(s)
      Shailk T.R.
    • Journal Title

      Proc.Nat'l Acad.Sci.USA 102

      Pages: 1023-1028

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Crystallization and preliminary X-ray analysis of C-terminal cytoplasmic domain of FlhA, a membrane protein subunit of the bacterial flagellar type III protein export apparatus.2005

    • Author(s)
      Saijo-Hamano, Y.
    • Journal Title

      Acta Crystallogr. F61

      Pages: 599-602

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Position and orientation of phalloidinin F-actin determinedby X-ray fiber diffraction analysis.2005

    • Author(s)
      Oda, T.
    • Journal Title

      Biophysical Journal 88

      Pages: 2727-2736

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Functionally important substructures of circadian clock protein KaiB in unique tetramer complex2005

    • Author(s)
      Iwase, R.
    • Journal Title

      Journal of Biological Chemistry 280

      Pages: 43141-43149

    • Related Report
      2005 Annual Research Report
  • [Journal Article] β-Helix is a likely core structure of yeast prion Sup35 amyloid fibers.2005

    • Author(s)
      Kishimoto, A.
    • Journal Title

      SPring-8 Research Frontiers

      Pages: 28-29

    • Related Report
      2005 Annual Research Report
  • [Journal Article] べん毛による細菌の泳ぎと方向転換の分子機構2005

    • Author(s)
      今田勝巳
    • Journal Title

      蛋白質 核酸 酵素 50

      Pages: 1335-1340

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 生体超分子のユニバーサルジョイント.In silicoで探る細菌べん毛フックのメカニズム2005

    • Author(s)
      北尾彰朗
    • Journal Title

      蛋白質 核酸 酵素 50

      Pages: 1335-1340

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Crystallization and preliminary X-ray crystallographic analysis of extracellular giant hemoglobin from pogonophoran Oligobrachia mashikoi.2005

    • Author(s)
      N.Numoto
    • Journal Title

      Biochim.Biophys.Acta, 1750

      Pages: 173-176

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi.2005

    • Author(s)
      N.Numoto
    • Journal Title

      Proc.Natl.Acad.Sci.USA 102

      Pages: 14521-14526

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Control of Bacteriophage T4 Tail Lysozyme Activity During the Infection Process.2005

    • Author(s)
      Shuji Kanamaru
    • Journal Title

      J.Mol.Biol. 346

      Pages: 1013-1020

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The tail structure of bacteriophage T4 and its mechanism of contraction.2005

    • Author(s)
      Victor A.
    • Journal Title

      Nat Struct Mol Biol. 12

      Pages: 810-813

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Stalk region of kinesin-related protein Unc104 has moderate ability to form coiled-coil dimer.2005

    • Author(s)
      Youske Shimizu
    • Journal Title

      Biochem.Biophys.Rres.Comm. 337

      Pages: 868-874

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Assembly and Infection Process of Bacteriophage T42005

    • Author(s)
      Fumio Arisaka
    • Journal Title

      Chaos 15

      Pages: 47502-47502

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Probing the oxygen activation reaction in intact whole mitochondria through analysis of molecular vibrations2005

    • Author(s)
      T.Takahashi
    • Journal Title

      J.Am.Chem.Soc. 127

      Pages: 9970-9971

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Reaction mechanism and phospholipids structures of bovine heart cytochrome c oxidase.2005

    • Author(s)
      S.Yoshikawa
    • Journal Title

      Biochem.Soc.Trans 33

      Pages: 934-937

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Preliminary Crystallographic analysis of the antibiotic discharge outer membrane lipoprotein OprM of Pseudomonas aeruginosa with an exceptionally long unit cell and complex lattice structure.2005

    • Author(s)
      H.Akama, et al.
    • Journal Title

      Acta Crysta. F61

      Pages: 131-133

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Conformational Change in the α-Subunit Coupled to Binding of the β2-Subunit of Tryptophan Synthase from Escherichia coli : Crystal Structure of the Tryptophan Synthase α-Subunit Alone.2005

    • Author(s)
      K.Nishi, et al.
    • Journal Title

      Biochemistry 44

      Pages: 1184-1192

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Transcription and the conserved interactions of two major structural proteins of a pair of Phytoreoviruses confirm the mechanism of assembly of the outer capsid layer2005

    • Author(s)
      Miyazaki.N, et al.
    • Journal Title

      J.Mol.Biol. 345

      Pages: 229-237

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Purification, characterization and sequence analyses of the extracellular giant hemoglobin from Oligobrachia mashikoi2005

    • Author(s)
      T.Nakagawa, et al.
    • Journal Title

      Z.Sci 22(3)(in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism.2004

    • Author(s)
      Samatey, F.A., Matsunami, H., Imada, K., Nagashima, S., Shaikh, T.R., Thomas, D., Chen, J.Z., DeRosier, D.J., Kitao, A., *Namba K.
    • Journal Title

      Nature 431

      Pages: 1062-1068

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] NO Reduction by Nitric-oxide Reductase from Denitrifying Bacterium Pseudomonas aeruginosa. CHARACTERIZATION OF REACTION INTERMEDIATES THAT APPEAR IN THE SINGLE TURNOVER CYCLE2004

    • Author(s)
      H.Kumita, et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 55247-55254

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Conserved region 2.1 of Escherichia coli heat shock transcription factor sigma32 is required for modulating both metabolic stability and transcriptional activity2004

    • Author(s)
      M.Horikoshi, et al.
    • Journal Title

      J Bacteriol. 186

      Pages: 7474-7480

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Self-assembly and type III protein export of the bacterial flagellum.2004

    • Author(s)
      Minamino, T.et al.
    • Journal Title

      Journal of Molecular Microbiology and Biotechnology 7

      Pages: 5-17

    • Related Report
      2004 Annual Research Report
  • [Journal Article] In vitro Characterization of FlgB, FlgC, Flg F, FlgG, FliE, Flagellar Basal Body Proteins of Salmonella.2004

    • Author(s)
      Hamano, Y.et al.
    • Journal Title

      Journal of Molecular Biology 339

      Pages: 423-435

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structure and Domain Organization of Salmonella FliK, a Hook-Length Contorol Protein, in Solution.2004

    • Author(s)
      Minamino, T.et al.
    • Journal Title

      Journal of Molecular Biology 341

      Pages: 491-502

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structural and Functional Analysis of the C-terminal Cytoplasmic Domain of FlhA, an Integral Membrane Component of; the Type III Flagellar Protein Export Apparatus in Salmonella.2004

    • Author(s)
      Hamano, Y.et al.
    • Journal Title

      Journal of Molecular Biology 343

      Pages: 457-466

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystallization of a core fragment of the flagellar hook protein, FlgE.2004

    • Author(s)
      Samatey, F.A.et al.
    • Journal Title

      Acta Crystallographica Section D 60

      Pages: 2078-2080

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism.2004

    • Author(s)
      Samatey, F.A.et al.
    • Journal Title

      Nature 431, 7012

      Pages: 1062-1068

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermusthermophilus.2004

    • Author(s)
      Hitomi Takahashi, et al.
    • Journal Title

      Acta Cryst D60

      Pages: 97-104

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The bacteriophage T4 DNA injection machine.2004

    • Author(s)
      Michael G.Rossmann, et al.
    • Journal Title

      Current Opinion in Structural Biology 14

      Pages: 171-180

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Mapping of functional sites on the primary structure of the contractile tail sheath protein of bacteriophage T4 by mutation analysis.2004

    • Author(s)
      Shigeki Takeda, et al.
    • Journal Title

      Biochim.Biophys.Acta 1699(1-2)

      Pages: 163-171

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The functional domains of bacteriophage T4 terminase.2004

    • Author(s)
      Shuji Kanamaru, et al.
    • Journal Title

      J Biol Chem. 279(39)

      Pages: 40795-40801

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The intrinsic stability of the second intermediate following the dioxygen-bound form in the O_2 reduction by cytochrome c oxidase2004

    • Author(s)
      Kenji Oda, et al.
    • Journal Title

      FEES Left 570

      Pages: 161-165

    • Related Report
      2004 Annual Research Report
  • [Presentation] タンパク質が引き起こす膜変形のダイナミクス2010

    • Author(s)
      北尾彰朗
    • Organizer
      日本物理学会 第65回年次大会 シンポジウム
    • Place of Presentation
      岡山大学津山キャンパス
    • Year and Date
      2010-03-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] タンパク質が引き起こす生体膜変形のダイナミクス(注:シンポジウムの概略説明含む)2010

    • Author(s)
      北尾彰朗
    • Organizer
      日本物理学会第65回年次大会
    • Place of Presentation
      岡山大学 津島キャンパス(岡山県)
    • Year and Date
      2010-03-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] 中性子非弾性散乱によるタンパク質の低エネルギーダイナミクスに対する水和効果2010

    • Author(s)
      中川洋
    • Organizer
      日本物理学会第65回年次大会
    • Place of Presentation
      岡山大学 津島キャンパス(岡山県)
    • Year and Date
      2010-03-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] いくつかの蛋白質でのリガンド結合に伴う構造変化の詳細メカニズム2010

    • Author(s)
      北尾彰朗
    • Organizer
      量子生命フロンティア研究特定ユニット第8回勉強会
    • Place of Presentation
      日本原子力研究機構システム計算科学センター(東京都)
    • Year and Date
      2010-03-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] 細菌べん毛モーター固定子複合体MotA/MotBの分子モデリング2010

    • Author(s)
      西原泰孝
    • Organizer
      2009年度べん毛研究交流会
    • Place of Presentation
      松風園(愛知県)
    • Year and Date
      2010-03-15
    • Related Report
      2009 Annual Research Report
  • [Presentation] 生体超分子の立体構造変化と機能2010

    • Author(s)
      北尾彰朗
    • Organizer
      分野間連携プロジェクト「巨大計算の新手法の開発と分子・物質シミュレーション中核拠点の形成」第6回連携研究会及成果報告
    • Place of Presentation
      分子科学研究所研究棟301(愛知県)
    • Year and Date
      2010-02-15
    • Related Report
      2009 Annual Research Report
  • [Presentation] 分子シミュレーションによるテラヘルツ領域での蛋白質ダイナミクス-計算による中性子散乱・テラヘルツ分光スペクトル-2010

    • Author(s)
      北尾彰朗
    • Organizer
      第1回テラヘルツーバイオ研究会
    • Place of Presentation
      情報通信研究機構神戸研究所未来ICT研究センター(兵庫県)
    • Year and Date
      2010-02-08
    • Related Report
      2009 Annual Research Report
  • [Presentation] 大規模分子動力学によるバイオナノマシンの機能シミュレーション2010

    • Author(s)
      北尾彰朗
    • Organizer
      スーパーコンピューターワークショップ2010「大規模並列分子シミュレーションの最前線」
    • Place of Presentation
      岡崎コンファレンスセンター(愛知県)
    • Year and Date
      2010-01-13
    • Related Report
      2009 Annual Research Report
  • [Presentation] 大きさと精密さに挑む生体超分子の結晶構造解析2010

    • Author(s)
      月原冨武
    • Organizer
      第23回日本放射光学会年会・放射光科学合同シンポジウム(特別講演)
    • Place of Presentation
      イーグレひめじ、姫路
    • Related Report
      2009 Final Research Report
  • [Presentation] 高精度の異常分散効果の測定によって明らかになった事実:酸化型チトクロム酸化酵素の還元中心Fe-Cu間にCl^-イオンは存在しない2010

    • Author(s)
      菅倫寛
    • Organizer
      第23回日本放射光学会年会
    • Place of Presentation
      イーグレ姫路,姫路
    • Related Report
      2009 Annual Research Report
  • [Presentation] 集団座標による分子シミュレーションの解析2009

    • Author(s)
      北尾彰朗
    • Organizer
      第5回分子・物質シミュレーション中核拠点形成事業人材育成講座「第3回 分子シミュレーションスクール」
    • Place of Presentation
      岡崎コンファレンスセンター(愛知県)
    • Year and Date
      2009-12-15
    • Related Report
      2009 Annual Research Report
  • [Presentation] 中性子散乱と分子シミュレーションによる蛋白質の立体構造ダイナミクス-現状と今後への期待-2009

    • Author(s)
      北尾彰朗
    • Organizer
      JSNS2009-中性子科学会/第9回年会
    • Place of Presentation
      いばらき量子ビーム研究センター(茨城県)
    • Year and Date
      2009-12-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] 分子量約1000万の核酸-タンパク質複合体vaultのX線結晶構造解析2009

    • Author(s)
      田中秀明
    • Organizer
      日本結晶学会
    • Place of Presentation
      関西学院大学(兵庫県)
    • Year and Date
      2009-12-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] S低・中分解能データから引き出される超分子の振るまい-高難度タンパク質複合体の構造解析を目指して2009

    • Author(s)
      山下栄樹
    • Organizer
      日本結晶学会
    • Place of Presentation
      関西学院大学(兵庫県)
    • Year and Date
      2009-12-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] 生体超分子機能解明のための大規模分子シミュレーション2009

    • Author(s)
      北尾彰朗
    • Organizer
      生体超分子の構造形成と機能制御の原子機構 第6回公開シンポジウム
    • Place of Presentation
      千里ライフサイエンスセンター(大阪府)
    • Year and Date
      2009-12-01
    • Related Report
      2009 Annual Research Report
  • [Presentation] タンパク質ダイナミクスと機能における水和の役割2009

    • Author(s)
      北尾彰朗
    • Organizer
      理研シンポジウム「動的水和構造と分子過程研究会III」
    • Place of Presentation
      理化学研究所Spring8上坪講堂(兵庫県)
    • Year and Date
      2009-11-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] バイオ分子間相互作用形態の階層的モデリング2009

    • Author(s)
      北尾彰朗
    • Organizer
      JST-CREST「マルチスケール・マルチフィジックス現象の統合シミュレーション」研究領域 平成21年度 公開シンポジウム
    • Place of Presentation
      東洋大学(東京都)
    • Year and Date
      2009-11-12
    • Related Report
      2009 Annual Research Report
  • [Presentation] I-BARドメインの膜結合分子ダイナミクス2009

    • Author(s)
      竹村和浩
    • Organizer
      第47回2009年度日本生物物理学会年会
    • Place of Presentation
      アスティとくしま(徳島県)
    • Year and Date
      2009-11-01
    • Related Report
      2009 Annual Research Report
  • [Presentation] 細胞間連絡を司るギャップ結合チャネルのX線結晶構造2009

    • Author(s)
      前田将司
    • Organizer
      大阪大学理学部生物科学研究科60周年記念シンポジウム
    • Place of Presentation
      大阪
    • Year and Date
      2009-10-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Seeing is believing:コンピューターでみてわかるバイオ分子2009

    • Author(s)
      北尾彰朗
    • Organizer
      夏の学校2009「日本バイオインフォマティクス学会」
    • Place of Presentation
      時の栖(静岡県)
    • Year and Date
      2009-09-13
    • Related Report
      2009 Annual Research Report
  • [Presentation] Motional correlation in protein dynamics2009

    • Author(s)
      Akio Kitao
    • Organizer
      Telluride Science Research Center Workshop on Protein Dynamics
    • Place of Presentation
      Telluride/CO (USA)
    • Year and Date
      2009-08-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] Multi-scale dynamics of protein complex formation2009

    • Author(s)
      Akio Kitao
    • Organizer
      International Symposium on Multi-Scale Dynamics of Protein Complex Formation and Function
    • Place of Presentation
      The Univ.of Tokyo ; Sanjo Conference Hall (Tokyo)
    • Year and Date
      2009-07-16
    • Related Report
      2009 Annual Research Report
  • [Presentation] Flexible protein-protein docking investigations on Cc-COX complex2009

    • Author(s)
      Hao Guo
    • Organizer
      International Symposium on Multi-Scale Dynamics of Protein Complex Formation and Function
    • Place of Presentation
      The Univ.of Tokyo ; Sanjo Conference Hall (Tokyo)
    • Year and Date
      2009-07-14
    • Related Report
      2009 Annual Research Report
  • [Presentation] 分子シミュレーションで探るバイオの世界:蛋白質から生体超分子まで2009

    • Author(s)
      北尾彰朗
    • Organizer
      公開セミナー「第19回バイオインフォマティクスへの招待」
    • Place of Presentation
      お茶の水女子大学理学部 2号館(東京都)
    • Year and Date
      2009-06-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] X線散漫散乱による生体分子の動的構造決定に向けた理論基盤の構築2009

    • Author(s)
      城地保昌
    • Organizer
      第4回特定領域研究「革新的ナノバイオ」班会議
    • Place of Presentation
      万国津梁館(沖縄県)
    • Year and Date
      2009-06-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] X-ray crystal structure determination of human connexin 26 gap junction channel at 3.5A resolution2009

    • Author(s)
      Shoji M
    • Organizer
      International symposium on structural biology from atoms to tissues
    • Place of Presentation
      Hyogo
    • Year and Date
      2009-03-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structures and functions of large molecular assemblies.2009

    • Author(s)
      Namba, K.
    • Organizer
      Awards Symposium of the 2009 Biophysical Society, Boston Convention and Exhibition Center
    • Place of Presentation
      Boston, U.S.A.
    • Year and Date
      2009-03-03
    • Related Report
      2009 Final Research Report
  • [Presentation] Purification and structure/function of connexin 26 gap junction2009

    • Author(s)
      Shoji M
    • Organizer
      Osaka/Glasgow structural biology mini-symposium
    • Place of Presentation
      Glasgow, Scotland
    • Year and Date
      2009-02-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] センサー膜タンパク質の構造解明2009

    • Author(s)
      三尾和弘
    • Organizer
      2008年度日本顕微鏡学会生体構造解析分科会研究討論会VIII
    • Place of Presentation
      大分県別府市
    • Year and Date
      2009-01-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] X-ray crystal structure of human gap junction channel2009

    • Author(s)
      Shoji M
    • Organizer
      NTHU-Osaka minisymposium
    • Place of Presentation
      Hsinchu, Taiwan
    • Related Report
      2009 Annual Research Report
  • [Presentation] X線による生体超分子構造研究のいま2009

    • Author(s)
      月原冨武
    • Organizer
      第50回日本生化学会
    • Place of Presentation
      とりぎん文化会館・鳥取県鳥取市
    • Related Report
      2009 Annual Research Report
  • [Presentation] 巨大複合体結晶の放射光X線データ測定と処理-巨大超分子の構造に原子レベルで迫る2009

    • Author(s)
      山下栄樹
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      全日空ホテル ニュースカイ,熊本
    • Related Report
      2009 Annual Research Report
  • [Presentation] ギャップ結合チャネルのX線結晶構造2009

    • Author(s)
      前田将司
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      全日空ホテル ニュースカイ,熊本
    • Related Report
      2009 Annual Research Report
  • [Presentation] ギャップジャンクションチャネルの構造決定手順2009

    • Author(s)
      菅倫寛
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      全日空ホテル ニュースカイ,熊本
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structure and Function of Cytochrome c Oxidase2009

    • Author(s)
      月原冨武
    • Organizer
      The 19^<th> Symposium on Role of Metals in Biological Reactions, Biology and Medidine (SRM2009)
    • Place of Presentation
      Icho Kaikan, Osaka University, Suita, Osaka, Japan
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structural insight into heterotypic channel compatibility among connexins by homology modeling2009

    • Author(s)
      So Nakagawa
    • Organizer
      International gap junction conference 2009
    • Place of Presentation
      Hilton Sedona Resort and Spa, Sedona, Arizona, USA
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structure of human gap junction channel2009

    • Author(s)
      Shoji M
    • Organizer
      International Gap Junction Conference 2009
    • Place of Presentation
      Hilton Sedona Resort and Spa, Sedona, Arizona, USA
    • Related Report
      2009 Annual Research Report
  • [Presentation] The structure of rat liver vault2009

    • Author(s)
      Tomitake Tsukihara
    • Organizer
      AsCA '09 Joint conference of the Asian crystallographic society and Chinese crystallography society
    • Place of Presentation
      Jingyi Hotel, Beijing, China
    • Related Report
      2009 Annual Research Report
  • [Presentation] Accurate measurements of anomalous dispersion effect shows there is no chloride ion between Fe and Cu ions in the reduction site of oxidized Cytochrome c Oxidase2009

    • Author(s)
      Michihiro Suga
    • Organizer
      AsCA '09 Joint conference of the Asian crystallographic society and Chinese crystallography society
    • Place of Presentation
      Jingyi Hotel, Beijing, China
    • Related Report
      2009 Annual Research Report
  • [Presentation] The structure of human connexin 26 gap junction channel2009

    • Author(s)
      Shoji M
    • Organizer
      AsCA '09 Joint conference of the Asian crystallographic society and Chinese crystallography society
    • Place of Presentation
      Jingyi Hotel, Beijing, China
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structural insight into heterotypic channel compatibility among connexins by homology modeling2009

    • Author(s)
      So Nakagawa
    • Organizer
      生物物理学会第四七回年会
    • Place of Presentation
      アスティ徳島
    • Related Report
      2009 Annual Research Report
  • [Presentation] ヒト由来コネキシン26ギャップ結合チャネルのX線結晶構造2009

    • Author(s)
      前田将司
    • Organizer
      日本生物物理学会第47会年会
    • Place of Presentation
      徳島県徳島市・アスティ徳島
    • Related Report
      2009 Annual Research Report
  • [Presentation] ラット肝臓由来ボルトの3.5A分解能での構造解析2009

    • Author(s)
      加藤公児
    • Organizer
      日本生物物理学会第47会年会
    • Place of Presentation
      徳島県徳島市・アスティ徳島
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structure of human connexin 26 gap junction channel2009

    • Author(s)
      So Nakagawa
    • Organizer
      Osaka University Macromolecular Symposium '09
    • Place of Presentation
      大阪大学豊中キャンパス
    • Related Report
      2009 Annual Research Report
  • [Presentation] サツマハオリムシV2巨大ヘモグロビン(分子量40万)の結晶構造2009

    • Author(s)
      沼本修孝
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島県徳島市・アスティ徳島
    • Related Report
      2009 Annual Research Report
  • [Presentation] サツマハオリムシV2ヘモグロビンのX線結晶構造解析2009

    • Author(s)
      沼本修孝
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸ボートアイランド
    • Related Report
      2009 Annual Research Report
  • [Presentation] 巨大ヘモグロビン(400kDa)のリガンド結合に伴う協同的な構造変化2009

    • Author(s)
      沼本修孝
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      全日空ホテル ニュースカイ,熊本
    • Related Report
      2009 Annual Research Report
  • [Presentation] 環形動物巨大ヘモグロビンの構造生物学-ヒトヘモグロヒンとは異なる酸素協同性機構-2008

    • Author(s)
      福森義宏
    • Organizer
      第81回日本生化学会大会(BMB2008)
    • Place of Presentation
      兵庫県・神戸市神戸ポートアイランド
    • Year and Date
      2008-12-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] 結晶を用いない単粒子電顕解析法によるイオンチャネルの構造解析Na・TRP・IP3Rチャネルの構造比較2008

    • Author(s)
      小椋俊彦
    • Organizer
      BMB2008(第31回日本分子生物学会年会第81回日本生化学会大会合同大会)
    • Place of Presentation
      兵庫県・神戸市神戸ポートアイランド
    • Year and Date
      2008-12-12
    • Related Report
      2008 Annual Research Report
  • [Presentation] Molecular mechanisms of self-assembly and its regulation of the bacterial flagellum.2008

    • Author(s)
      Namba, K.
    • Organizer
      9th Asia-Pacific Microscopy Conference (APMC9), International Convention Center Jeju
    • Place of Presentation
      Jeju Island, Korea
    • Year and Date
      2008-11-04
    • Related Report
      2009 Final Research Report
  • [Presentation] The 3D structure of ion channels, sensors and receptors revealed by electron microscopy2008

    • Author(s)
      Toshihiko Ogura
    • Organizer
      International Conference of Physiological Sciences and 11th International Symposium on Molecular Medicine
    • Place of Presentation
      Crete, Greece
    • Year and Date
      2008-10-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] X-ray structural analysis of bovine cytocbrome c oxidase2008

    • Author(s)
      月原冨武
    • Organizer
      International Symposium on Membrane Proteins and High Resolution X-ray Structural Analysis
    • Place of Presentation
      兵庫県赤穂郡先端科学技術支援センター
    • Year and Date
      2008-09-01
    • Related Report
      2008 Annual Research Report
  • [Presentation] 呼吸酵素チトクロム酸化酵素の働きの仕組み2008

    • Author(s)
      月原冨武
    • Organizer
      千里ライフサイエンスセミナー「生命機能を支える生体超分子の高次構造と機能」
    • Place of Presentation
      大阪府豊中市千里ライフサイエンスセンター
    • Year and Date
      2008-02-28
    • Related Report
      2008 Annual Research Report
  • [Presentation] Molecular mechanisms of self-assembly and mechanical functions of the bacterial flagellum.2008

    • Author(s)
      Namba, K.
    • Organizer
      Berzelius days, Stockholm University
    • Place of Presentation
      Stockholm, Sweden
    • Year and Date
      2008-01-31
    • Related Report
      2009 Final Research Report
  • [Presentation] Reaction mechanism of bovine heart cytochrome c oxidase2008

    • Author(s)
      Yoshikawa, S.
    • Organizer
      53rd National Meeting of Italian Society of Biochemistry and Molecular Biology (plenary lecture)
    • Place of Presentation
      Riccione, Italy
    • Related Report
      2009 Final Research Report
  • [Presentation] ビブリオファージKVP40のgp5-ORF334複合体の構造と機能2008

    • Author(s)
      根本舞、金丸周司、有坂文雄
    • Organizer
      第8回蛋白質科学会年会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] Structure of a large ribonucleoprotein complex2008

    • Author(s)
      加藤公児
    • Organizer
      生体防御医学研究所第17回ホットスプリングハーバー国際シンポジウム/第3回研究所ネットワーク国際シンポジウム合同シンポジウム
    • Place of Presentation
      大分県別府市別府亀の井ホテル
    • Related Report
      2008 Annual Research Report
  • [Presentation] ラット肝臓由来vaultのX線結晶構造解析2008

    • Author(s)
      加藤公児
    • Organizer
      特定領域研究「生体超分子の構造形成と機能制御の原子機構」第4回ワークショップ
    • Place of Presentation
      兵庫県淡路市淡路夢舞台国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] ヒト由来ギャップ結合チャネルのX線結晶構造解析2008

    • Author(s)
      前田将司
    • Organizer
      特定領域研究「生体超分子の構造形成と機能制御の原子機構」第4回ワークショップ
    • Place of Presentation
      兵庫県淡路市淡路夢舞台国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] ウイルスなどの生体超分子のX線結晶構造解析2008

    • Author(s)
      月原冨武
    • Organizer
      第55回毒素シンポジウム
    • Place of Presentation
      山梨県南都留郡ラフォーレ山中湖
    • Related Report
      2008 Annual Research Report
  • [Presentation] X-ray crystal structural analysis of cyamde bmding cytochrome c oxidase2008

    • Author(s)
      Masao Mocluzuki
    • Organizer
      15^<th> European Bioenergetics Conference
    • Place of Presentation
      Trinity College Dublin, Ireland
    • Related Report
      2008 Annual Research Report
  • [Presentation] A peroxide bridge between the two metals in the dmuclear center of the fully oxidized cytochrome c oxidase2008

    • Author(s)
      Hiroshi Aoyama
    • Organizer
      15^<th> European Bioenergetics Conference
    • Place of Presentation
      Trinity College Dublin, Ireland
    • Related Report
      2008 Annual Research Report
  • [Presentation] Synthesis of functional Paracoccus Denitrificans cytochrome c oxidase by Escherichia coli cell-free coupled transcription/translation system2008

    • Author(s)
      Yukie Katayama
    • Organizer
      15^<th> European Bioenergetics Conference
    • Place of Presentation
      Trinity College Dublin, Ireland
    • Related Report
      2008 Annual Research Report
  • [Presentation] Mutations of possible proton-transfer pathways of bovine heart cytochrome c oxidase2008

    • Author(s)
      Kunitoshi Shimokata
    • Organizer
      15^<th> European Bioenergetics Conference
    • Place of Presentation
      Trinity College Dublin, Ireland
    • Related Report
      2008 Annual Research Report
  • [Presentation] X-ray structure of carbon monoxide at copper site of the dinuclear site of cytochrome c oxidase2008

    • Author(s)
      Kazumasa Muramoto
    • Organizer
      15^<th> European Bioenergetics Conference
    • Place of Presentation
      Trinity College Dublin, Ireland
    • Related Report
      2008 Annual Research Report
  • [Presentation] Structural analyses for lipid/protein interactions in bovine heart cytochrome c oxidase2008

    • Author(s)
      Kyoko Shinzawa-Itoh
    • Organizer
      15^<th> European Bioenergetics Conference
    • Place of Presentation
      Trinity College Dublin, Ireland
    • Related Report
      2008 Annual Research Report
  • [Presentation] X-ray structural analysis of zinc/cadmium inhibitory site in bovine heart cytochrome c oxidase2008

    • Author(s)
      Kazumasa Muramoto
    • Organizer
      15^<th> European Bioenergetics Conference
    • Place of Presentation
      Trinity College Dublin, Ireland
    • Related Report
      2008 Annual Research Report
  • [Presentation] Evidence for the H-channel proton pump in bovine cytochrome c oxidase2008

    • Author(s)
      Shinya Yoshikawa
    • Organizer
      15^<th> European Bioenergetics Conference
    • Place of Presentation
      Trinity College Dublin, Ireland
    • Related Report
      2008 Annual Research Report
  • [Presentation] Structure of vault purified from rat liver2008

    • Author(s)
      加藤公児
    • Organizer
      第21回国際結晶学会年会
    • Place of Presentation
      大阪府大阪市グランキューブ大阪
    • Related Report
      2008 Annual Research Report
  • [Presentation] X-ray structure of Human gap Junction Channel2008

    • Author(s)
      前田将司
    • Organizer
      第21回国際結晶学会年会
    • Place of Presentation
      大阪府大阪市グランキューブ大阪
    • Related Report
      2008 Annual Research Report
  • [Presentation] X-ray structure of the vault purified from rat liver2008

    • Author(s)
      田中秀明
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] Crystal structure of human gap Junction channel2008

    • Author(s)
      前田将司
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] Refined structural analysis of carbon monoxide and nitric oxide at the dinuclear site of cytochrome c oxidase2008

    • Author(s)
      村本和優
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] X-ray structural analysis of zinc/cadmium inhibitory site in bovine heart cytochrome c oxidase2008

    • Author(s)
      前田和範
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] High resolution and precise X-ray crystal structure determination of Cyctochrome c Oxidase2008

    • Author(s)
      菅倫寛
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] ヒト由来コネキシン26ギャップ結合チャネルのX線結晶構造解析2008

    • Author(s)
      前田将司
    • Organizer
      特定領域研究「生体超分子の構造形成と機能制御の原子機構」第5回公開シンポジウム
    • Place of Presentation
      茨城県つくば市つくば国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] ラット肝臓由来vaultのX線結晶構造解析2008

    • Author(s)
      加藤公児
    • Organizer
      特定領域研究「生体超分子の構造形成と機能制御の原子機構」第5回公開シンポジウム
    • Place of Presentation
      茨城県つくば市つくば国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] ヒト由来コネキシン26ギャップ結合チャネルのX線結晶構造解析2008

    • Author(s)
      前田将司
    • Organizer
      第7回コネキシン研究会
    • Place of Presentation
      京都府京都市ホテルルビノ京都堀川
    • Related Report
      2008 Annual Research Report
  • [Presentation] Reaction mechamsm of bovine heart cytochrome c oxidase2008

    • Author(s)
      Shinya Yoshikawa
    • Organizer
      53^<rd> National Meeting of Italian Society of Biochemistry and Molecular Biology
    • Place of Presentation
      Riccione, Italy
    • Related Report
      2008 Annual Research Report
  • [Presentation] X-ray structure of carbon monoxide at copper site of the dmuclear site of cytochrome c oxidase2008

    • Author(s)
      吉川信也
    • Organizer
      第21回国際結晶学会年会
    • Place of Presentation
      大阪府大阪市グランキューブ大阪
    • Related Report
      2008 Annual Research Report
  • [Presentation] High resolution X-ray diffraction experiment of bovine cytochrome c oxidase2008

    • Author(s)
      Michihiro Suga
    • Organizer
      15^<th> European Bmenergetics Conference
    • Place of Presentation
      Trmity College Dublin, Ireland
    • Related Report
      2008 Annual Research Report
  • [Presentation] ブタ心筋ミトコンドリア中のチトクロムc酸化酵素の共鳴ラマンスペクトル2008

    • Author(s)
      柳沢幸子
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] サツマハオリムシ巨大ヘモグロビンの56A分解能結晶構造2008

    • Author(s)
      沼本修孝
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] 環形動物マシコヒゲムシの細胞外巨大ヘモグロビンの円二色性スペクトル2008

    • Author(s)
      中川太郎
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] 超分子複合体タンパク質の微少重力下での結晶化2008

    • Author(s)
      長谷川裕
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] Ligand-induced structural changes of giant hemoglobin2008

    • Author(s)
      Nobutaka Numoto
    • Organizer
      第21回国際結晶学会年会
    • Place of Presentation
      大阪府大阪市グランキューブ大阪
    • Related Report
      2008 Annual Research Report
  • [Presentation] Maximum likelihood approach for picking-up process in single particle analysis2008

    • Author(s)
      Masaaki Kawata
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] 単粒子解析によるTRP channel family間での構造比較Structure of TRP channels revealed by single particle analysis using EM images2008

    • Author(s)
      Kazuhiro Mio
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡県福岡市福岡国際会議場
    • Related Report
      2008 Annual Research Report
  • [Presentation] マシコヒゲムシ巨大ヘモグロビンの金属結合型結晶構造2007

    • Author(s)
      沼本修孝, 中川太郎, 喜田昭子, 笹山雄一, 福森義宏, 三木邦夫
    • Organizer
      第7回日本蛋白質科学会年会
    • Place of Presentation
      仙台国際センター(仙台)
    • Year and Date
      2007-05-24
    • Related Report
      2009 Final Research Report
  • [Presentation] 腸球菌のペプチドフェロモンGBAPとその受容体膜タンパク質FsrCの構造解析2007

    • Author(s)
      永田宏次, 高橋美穂子, 浅野敦子, 筒井志穂, 山田邦永, 西口賢三, 中山二郎, 園元謙二, 田之倉優
    • Organizer
      日本農芸化学会
    • Place of Presentation
      世田谷区(東京都)
    • Related Report
      2009 Final Research Report
  • [Presentation] Probing a Molecular Vibration of Cytochrome c Oxidase during Tum over in Whole Mitochondria2007

    • Author(s)
      小倉 尚志
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] Paracoccus denitirficans チトクロム酸化酵素遺伝子の大腸菌無細胞転写翻沢系での発現に及ぼすYidC強制発現の効果2007

    • Author(s)
      片山 幸江
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] 共鳴ラマン分光法によるウシ心筋ミトコンドリア呼吸鎖NADH:ユビキノン酸化還元酵素のFMNと鉄硫黄クラスターの測定2007

    • Author(s)
      森山 昌和
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] ウシ心筋NADH-ユビキノン酸化還元酵素の2次元結晶化2007

    • Author(s)
      天野 聡子
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] 酸化型ウシ心筋チトクロム酸化酵素のX線構造2007

    • Author(s)
      青山 浩
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] ウシチトクロム酸化酵素の水形成用プロトン輸送経路D-pathwayの変異体解析2007

    • Author(s)
      下方 国稔
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] ミトコンドリア中のチトクロムc酸化酵素の構造解析:新たなv(Fe-CO)ラマンモードの観測2007

    • Author(s)
      橋本 通子
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] ウシ心筋チトクロム酸化酵素のZn阻害部位のX線構造解析2007

    • Author(s)
      村本 和優
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] ウシ心筋チトクロム酸化酵素の反応中間体のX線構造解析2007

    • Author(s)
      鍋倉 弘行
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] 部分還元型ウシ心筋チトクロム酸化酵素のX線構造解析2007

    • Author(s)
      谷口 槙
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] シアン化物結合型チトクロム酸化酵素のX線結晶構造解析2007

    • Author(s)
      望月 正雄
    • Organizer
      第45回日本生物物理学会年会
    • Place of Presentation
      神奈川県横浜市 パイフィコ横浜
    • Related Report
      2007 Annual Research Report
  • [Presentation] Reaction mechanism of bovine heart cytochrome c oxidase2006

    • Author(s)
      S. Yoshikawa
    • Organizer
      The 14th European Bioenergetics Conference (plenary lecture)
    • Place of Presentation
      Moscow Russia
    • Related Report
      2009 Final Research Report
  • [Presentation] 高分解能構造解析によるチトクロム酸化酵素のプロトンポンプ機構2005

    • Author(s)
      月原冨武
    • Organizer
      第43回日本生物物理学会年会
    • Place of Presentation
      札幌コンベンションセンター
    • Related Report
      2009 Final Research Report
  • [Presentation] xperimental results indicating that heme a of bovine heart cytochrome c oxidase is the driving element of the proton-pumping2005

    • Author(s)
      S. Yoshikawa
    • Organizer
      International Conference on Mitochondria, from Molecular Insight to Physiology and Pathology 40 Years of Bari Meetings (invited presentation)
    • Place of Presentation
      University of Bari, Bari Italy
    • Related Report
      2009 Final Research Report
  • [Presentation] Mass spectral and X-ray structural analyses of lipids in bovine heart cytochrome c oxidase

    • Author(s)
      S. Yoshikawa
    • Organizer
      BioScience 2005-from Gene to Systems (invited presentation)
    • Place of Presentation
      20050717-20050721
    • Related Report
      2009 Final Research Report
  • [Book] Structural Approach(Photosynthetic Protein Complexes)2008

    • Author(s)
      Shen J. -R., Henmi T., Kamiya N
    • Publisher
      AWILEY-VCH
    • Related Report
      2009 Final Research Report
  • [Book] 自己組織化体としての生体超分子(バイオナノプロセス-溶液中でナノ構造を作るウェット・ナノテクノロジーの薦め-)2008

    • Author(s)
      南野徹, 難波啓一
    • Publisher
      シーエムシー出版
    • Related Report
      2009 Final Research Report
  • [Book] タンパク質科学 構造・物性・機能(後藤祐児・桑島邦博・谷澤克行【編】, 超分子構造アセンブリーとタンパク質ネットワーク タンパク質-タンパク質相互作用)2005

    • Author(s)
      今田勝巳, 難波啓一
    • Publisher
      化学同人
    • Related Report
      2009 Final Research Report
  • [Book] β-Helix is a likely core structure of yeast prion Sup35 amyloid fibers.2005

    • Author(s)
      Kishimoto, A., Hasegawa, K., Namba, K.
    • Publisher
      Spring8 Research Frontiers
    • Related Report
      2009 Final Research Report
  • [Book] Biophysical and Structural Aspects of Bioenrgetics(Marten Wikstrom ed., Structural chemical studies on the reaction mechanism of cytochrome c oxidase)2005

    • Author(s)
      S. Yoshikawa
    • Publisher
      Royal Society of Chemistry
    • Related Report
      2009 Final Research Report
  • [Book] Virtual Text(B. Lewin ed., Mitochondrial cytochrome c oxidase in "Structures")2005

    • Author(s)
      S. Yoshikawa
    • Publisher
      Ergito
    • Related Report
      2009 Final Research Report
  • [Book] タンパク質科学2005

    • Author(s)
      有坂文雄
    • Total Pages
      579
    • Publisher
      化学同人
    • Related Report
      2009 Final Research Report
  • [Book] Photosystem II: The Light-Driven Water: Plastoquinone Oxidoreductase2005

    • Author(s)
      Shen J. -R., Kamiya N.
    • Total Pages
      29
    • Publisher
      Springer
    • Related Report
      2009 Final Research Report
  • [Book] Biophysical and Structural aspects of Bioenrgetics2005

    • Author(s)
      Shinya Yoshikawa
    • Publisher
      Marten Wikstrom (in press)
    • Related Report
      2004 Annual Research Report
  • [Book] Structures2005

    • Author(s)
      Shinya Yoshikawa
    • Publisher
      B.Lewin (in press)
    • Related Report
      2004 Annual Research Report
  • [Book] バイオサイエンスのための蛋白質科学入門(2009第3版)2004

    • Author(s)
      有坂文雄
    • Publisher
      裳華房
    • Related Report
      2009 Final Research Report
  • [Book] Protein Crystallarography in Drug Discovery(R.E. Babine and S.S.Abdel-Meguid)2004

    • Author(s)
      T. Mizushima, et al.
    • Total Pages
      278
    • Related Report
      2009 Final Research Report
  • [Book] Protein Crystallarography in Drug Discovery2004

    • Author(s)
      T.Mizushima, et al.
    • Total Pages
      278
    • Publisher
      R.E.Babine and S.S.Abdel-Meguid
    • Related Report
      2004 Annual Research Report
  • [Book] 第18回「大学と科学」公開シンポジウム講演収録集「タンパク質のかたちから生命のなぞを解く」-生物マシーナリー構透隼卿学の最前線2004

    • Author(s)
      有坂 文雄
    • Total Pages
      231
    • Related Report
      2004 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/crystallography/tokutei/index.htm

    • Related Report
      2009 Final Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/crystallography/tokutei/index.htm

    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.acjp/crystallography/tokutei/index.htm

    • Related Report
      2008 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/crystallography/tokutei/index.htm

    • Related Report
      2007 Annual Research Report
  • [Patent(Industrial Property Rights)] 画像処理システム、画像処理方法、プログラムおよび記録媒体2008

    • Inventor(s)
      川田正晃、佐藤主税
    • Industrial Property Rights Holder
      独立行政法人産業技術総合研究所
    • Industrial Property Number
      2008-289005
    • Filing Date
      2008-11-11
    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 構造推定システム、構造推定方法およびプログラム2008

    • Inventor(s)
      川田正晃、佐藤主税
    • Industrial Property Rights Holder
      独立行政法人産業技術総合研究所
    • Patent Publication Number
      2008-134212
    • Acquisition Date
      2008-06-12
    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 構造推定システム、構造推定方法およびプログラム2008

    • Inventor(s)
      川田正晃、佐藤主税
    • Industrial Property Rights Holder
      独立行政法人産業技術総合研究所
    • Acquisition Date
      2008-08-22
    • Related Report
      2009 Final Research Report
  • [Patent(Industrial Property Rights)] 電子顕微鏡観察像の画像処理方法および画像処理プログラム並びに記録媒体2007

    • Inventor(s)
      小椋俊彦、佐藤主税、藤吉好則
    • Industrial Property Rights Holder
      独立行政法人産業技術総合研究所
    • Acquisition Date
      2007-06-15
    • Related Report
      2009 Final Research Report

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Published: 2004-04-01   Modified: 2018-03-28  

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