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Live cell analysis of cellular responses to various types of DNA damage induced by reactive oxygen

Research Project

Project/Area Number 16201010
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Risk sciences of radiation/Chemicals
Research InstitutionTohoku University

Principal Investigator

YASUI Akira  Tohoku University, Institute of Development, Aging and Cancer, Professor (60191110)

Co-Investigator(Kenkyū-buntansha) TAKAO Masashi  Tohoku University, Institute of Development, Aging and Cancer, Lecturer (70216612)
NAKAJIMA Satoshi  Tohoku University, Institute of Development, Aging and Cancer, Assistant Prof. (00375114)
Project Period (FY) 2004 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥48,750,000 (Direct Cost: ¥37,500,000、Indirect Cost: ¥11,250,000)
Fiscal Year 2007: ¥10,010,000 (Direct Cost: ¥7,700,000、Indirect Cost: ¥2,310,000)
Fiscal Year 2006: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Fiscal Year 2005: ¥12,350,000 (Direct Cost: ¥9,500,000、Indirect Cost: ¥2,850,000)
Fiscal Year 2004: ¥15,470,000 (Direct Cost: ¥11,900,000、Indirect Cost: ¥3,570,000)
KeywordsDNA damage / DNA repair / reactive oxygen species / visual analysis / proteomics / DNA strand breaks / cancer / Aging / 癌化 / 老化 / APエンドヌクレアーゼ / 塩基損傷 / 単鎖切断 / 二重鎖切断 / PARP / 可視化 / 癌 / 生体分子 / レーザー / 放射線 / リアルタイム解析
Research Abstract

Using local irradiation of UVA laser light through microscopic lens, we have developed methods to produce various types of oxidative DNA damage within human nucleus and analyzed real time response of proteins to the damage site. We identified a number of novel proteins involved in the repair of base damage, single-strand breaks and double-strand breaks. Furthermore, we applied proteome analysis by LC/MS/MS spectrometer and identified protein complexes necessary for the repair of oxidative DNA damage within human cell. DNA damage causes genome instability and cell death, but many of the cellular responses to DNA damage still remain elusive. We found, for example. a human protein, PALF (PNK and APTX-like FHA protein), with an FHA (forkhead-associated) domain and novel zinc-finger-like CYR (cysteine-tyrosine-arginine) motifs that are involved in responses to DNA damage. We found that the CYR motif is widely distributed among DNA repair proteins of higher eukaryotes, and that PALF, as well as a Drosophila protein with tandem CYR motifs, has endo- and exonuclease activities against abasic site and other types of base damage. PALF accumulates rapidly at single-strand breaks in a poly(ADP-ribose) polymerase 1 (PARP1)-dependent manner in human cells. Indeed, PALF interacts directly with PARP1 and is required for its activation and for cellular resistance to methyl-methane sulfonate. PALF also interacts directly with KU86, LIGASEIV and phosphorylated XRCC4 proteins and possesses endo/exonuclease activity at protruding DNA ends. Various treatments that produce double-strand breaks induce formation of PALF foci, which fully coincide with gammaH2AX foci. Thus, PALF and the CYR motif may play important roles in DNA repair of higher eukaryotes.

Report

(5 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (40 results)

All 2007 2006 2005 2004 Other

All Journal Article (33 results) (of which Peer Reviewed: 9 results) Presentation (7 results)

  • [Journal Article] HMGBl is a co-factor in mammalian base excision repair.2007

    • Author(s)
      Prasad, et al.
    • Journal Title

      Mol Cell 27

      Pages: 829-841

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] The Werner syndrome protein interacts functionally with translesion DNA synthesis.2007

    • Author(s)
      Kamath-Loeb, et al.
    • Journal Title

      Proc. Natl, Acad. Sci, USA 104

      Pages: 10394-10399

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] A novel liuman AP endonuclease with conserved zinc-finger-like motifs involved in DNA strand break responses2007

    • Author(s)
      Kanno., et. al
    • Journal Title

      EMBO J 26

      Pages: 2094-2103

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Recruitment of DNA repair synthesis machinery to sites of DNA damage/repair in living cells.2007

    • Author(s)
      Hashigucli, et al.
    • Journal Title

      Nucleic Adds Res 35

      Pages: 2913-2923

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] HMGB1 is a co-factor in mammalian base excision repair.2007

    • Author(s)
      Prasad, et al.
    • Journal Title

      Nol. Cell 27

      Pages: 829-841

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] The Werner syndrome protein interacts functionally with translesion DNA synthesis.2007

    • Author(s)
      Kamath-Loeb, et al.
    • Journal Title

      Proc. Natl. Acad. Sci. USA. 104

      Pages: 10394-10399

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] A novel human AP endonuclease with conserved zinc-finger-like motifs involved in DNA strand break responses2007

    • Author(s)
      Kanno, S, et al.
    • Journal Title

      EUBO J. 26

      Pages: 2094-2103

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Recruitment of DNA repair synthesis machinery to sites of DNA damage/repair in living cells.2007

    • Author(s)
      Hashiguchi, K., et al.
    • Journal Title

      Nucleic Acids Res. 35

      Pages: 2913-2923

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] HMGB1 is a co-factor in mammalian base excision repair2007

    • Author(s)
      Prasad, R., Kanno, S, , Yasui, A.
    • Journal Title

      Mol Cell 27

      Pages: 829-841

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Werner syndrome protein interacts functionally with translesion DNA synthesis.2007

    • Author(s)
      Kamath-Loeb, A. S., Yasui, A., 他
    • Journal Title

      Proc. Natl. Acad. Sci. USA 104

      Pages: 10394-10399

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel human AP endonuclease with conserved zinc-finger-like motifs involved in DNA strand break responses2007

    • Author(s)
      Kanno, S. Yasui, A., 他
    • Journal Title

      EMBO J. 26

      Pages: 2094-2103

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel human AP endonuclease with conserved zinc-finger-like motifs involved in DNA strand break responses2007

    • Author(s)
      Kanno, S., 他
    • Journal Title

      EMBO J. 26

      Pages: 2094-2103

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Recruitment of DNA repair synthesis machinery to sites of DNA damage/repair in living human cells.2007

    • Author(s)
      Hashiguchi, K., 他
    • Journal Title

      Nucleic Acids Res. (印刷中)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] RAD18 and poly(ADP-ribose) polymerase independently suppress the access of nonhomologous end joining to double-strand breaks and facilitate homologous recombination-mediated repair.2007

    • Author(s)
      Saberi, A., 他
    • Journal Title

      Mol. Cell Biol. 27

      Pages: 2562-2671

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Vertebrate POLQ and POLbeta cooperate in base excision repair of oxidative DNA damage.2007

    • Author(s)
      Yoshimura, M., 他
    • Journal Title

      Mol. Cell 24

      Pages: 115-125

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Replication-dependent and-independent responses of RAD18 to DNA damage in human cells.2006

    • Author(s)
      Nakajima, et al
    • Journal Title

      J. Biol. Chem. 281

      Pages: 34687-34695

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Replication-dependent and -independent responses of RAD18 to DNA damage in human cells.2006

    • Author(s)
      Nakajima, S, et al.
    • Journal Title

      J. Biol. Chem. 281

      Pages: 34687-34695

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Replication-dependent and -independent responses of RAD18 to DNA damage in human cells.2006

    • Author(s)
      Nakajima, S., 他
    • Journal Title

      J. Biol. Chem 281

      Pages: 34687-34695

    • Related Report
      2006 Annual Research Report
  • [Journal Article] ALADINI482S causes selective failure of nuclear protein import and hypersensitivity to oxidative stress in triple A syndrome.2006

    • Author(s)
      Hirano. M., 他
    • Journal Title

      Proc. Natl. Acad. Sci. USA 103

      Pages: 2298-2303

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Accumulation of Werner protein at DNA double-strand breaks in human cells2005

    • Author(s)
      Lan L., et al.
    • Journal Title

      J. Cell Soi. 118

      Pages: 4153-4162

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Accumulation of Werner protein at DNA double-strand breaks in human cells.2005

    • Author(s)
      Lan L, et al.
    • Journal Title

      J. Cell Sci. 118

      Pages: 4153-4162

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Accumulation of Werner protein at DNA double-strand breaks in human cells2005

    • Author(s)
      Lan L., Nakajima S, Komatsu K, Nussenzweig A, Shimamoto A, Oshima J, Yasui A.
    • Journal Title

      J. Cell Sci. 118

      Pages: 4153-4162

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Translocation of XRCC1 and DNA ligase IIIa from centrosomes to chromosomes in response to DNA damage in mitotic human cells.2005

    • Author(s)
      Okano S, Lan L, Tomkinson AE, Yasui A
    • Journal Title

      Nucleic Acids Res. 33

      Pages: 422-429

    • Related Report
      2005 Annual Research Report
  • [Journal Article] DNA Polymerase lambda protect mouse fibroblasts against oxidative DNA damage and is recruited to sites of DNA damage repair2005

    • Author(s)
      Braithwaite EK, Kedar PS, Lan L, Polosina YY, Asagoshi K, Poltorasky V, Horton JK, Miller H, Teebor GW, Yasui A, Wilson SH.
    • Journal Title

      J.Biol.Chem. 280

      Pages: 31641-31647

    • Related Report
      2005 Annual Research Report
  • [Journal Article] MSH2-MSH6 stimulates DNA polymerase eta, suggesting a role for A-T mutation in immunoglobulin genes2005

    • Author(s)
      Wilson TM, Vaisman A, Maritomo SA, Sullivan P, Lan L, Hanaoka F, Yasui A, Woodgate R, _Gearhart PJ.
    • Journal Title

      J.Exp.Med. 201

      Pages: 637-645

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Powerful skin cancer protection by a CPD-photolyase transgene2005

    • Author(s)
      Jans J, Schul W, Sert Y-G, Rijksen Y, Rebel H, Eker APM, Nakajima S, van Steeg H, de Gruiji FR, Yasui A, Hoejimakers JHJ, van der Horst GTJ
    • Journal Title

      Curr. Biology 15

      Pages: 1-20

    • Related Report
      2005 Annual Research Report
  • [Journal Article] DNA repair initiated by glycosylases in the nucleus and mitochondria of mammalian cells ; how our cells respond to a flood of oxidative DNA damage2005

    • Author(s)
      Takao M, Yasui A.
    • Journal Title

      J Darmat Sci.Suppl. 1

    • NAID

      10020568049

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Powerful skin cancer protection by a CPD-photolyase transgene2005

    • Author(s)
      Jans J.et al.
    • Journal Title

      Curr.Biology 15

      Pages: 1-20

    • Related Report
      2004 Annual Research Report
  • [Journal Article] UV Light-induced DNA Damage and Tolerance for the Survival of Nucleotide Excision Repair-deficient Human Cells2004

    • Author(s)
      Nakajima S.et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 46674-46677

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Fundamental and physical interaction2004

    • Author(s)
      Lan L.et al.
    • Journal Title

      DNA Repair 3

      Pages: 135-143

    • Related Report
      2004 Annual Research Report
  • [Journal Article] In situ analysis of repair processes for oxidative DNA damage in mammalian cells2004

    • Author(s)
      Lan L.et al.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 101

      Pages: 13738-13743

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A Translocation of XRCC1 and DNA ligase III{alpha} from centrosomes to chromosomes in response to DNA damage in mitotic human cells

    • Author(s)
      Okano S.et al.
    • Journal Title

      Nucleic Acids Res. (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] MSH2-MSH6 stimulates DNA polymerase {eta}, suggesting a role for A:T mutations in antibody genes

    • Author(s)
      Wilson TM.et al.
    • Journal Title

      J.Exp.Med. (in press)

    • Related Report
      2004 Annual Research Report
  • [Presentation] DNA修復を組織するマッチメーカー蛋白の動態と修復プロセスの可視化解析2007

    • Author(s)
      安井 明
    • Organizer
      第7回日本蛋白質科学会年会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2007-05-26
    • Related Report
      2007 Annual Research Report
  • [Presentation] Cellular responses to DNA strand breaks in human cells2007

    • Author(s)
      Yasui, A.
    • Organizer
      Gordon Research Conference on Mammalian DNA Repair
    • Place of Presentation
      Ventura, CA, USA.
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Cellular responses to single-strand breaks, a major cause of cancer between base damage and double-strand breaks2006

    • Author(s)
      Yasui, A.
    • Organizer
      Gordon Research. Conference on DNA damage, Mutatiou and Cancer
    • Place of Presentation
      Ventura, CA, USA.
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Cellular responses to single-strand breaks, a major cause of cancer between base damage and double-strand breaks2006

    • Author(s)
      Yasui A.
    • Organizer
      Gordon Research Conference on DNA damage, Mutation and Cancer
    • Place of Presentation
      Ventura, CA, USA.
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Dynamic responses to Single-strand Breaks in Human cells2005

    • Author(s)
      Yasui, A.
    • Organizer
      Keystone Symposia ; Genome Instability and Repair
    • Place of Presentation
      Taos, New Mexico, USA.
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Following cellular responses induced by oxidative DNA damage in human cells.2005

    • Author(s)
      Yasui, A.
    • Organizer
      Gordon Research Conference on Genetic Toxicology
    • Place of Presentation
      New London, NH, USA.
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Dynamic responses to Single-strand Breaks in Human cells.2005

    • Author(s)
      Yasui A.
    • Organizer
      Keystone Symposia ; Genome Instability and Repair
    • Place of Presentation
      Taos, New Mexico, USA.
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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