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Preservation and utilization of genetic resources of domestic ruminants, based on studies of the origin and phylogeny

Research Project

Project/Area Number 16201046
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Resource conservation science
Research InstitutionNagoya University

Principal Investigator

NAMIKAWA Takao  Nagoya University, Graduate School of Bioagricultural Sciences, Professor (70111838)

Co-Investigator(Kenkyū-buntansha) AMANO Takashi  Tokyo University of Agriculture, Faculty of Agriculture, Professor (90078147)
MAEDA Yoshizane  Kagoshima University, Faculty of Agriculture, Professor (50041661)
MANNEN Hideyuki  Kobe University, Graduate School of Science and Technology, Associate Professor (20263395)
TANAKA Kazuaki  Azabu University, Scbool of Veterinary Medicine, Lecturer (50345873)
YAMAGATA Takahiro  Nagoya University, Graduate School of Bioagricultural Sciences, Assistant Professor (50242847)
石川 明  名古屋大学, 大学院・生命農学研究科, 助教授 (20211724)
Project Period (FY) 2004 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥49,790,000 (Direct Cost: ¥38,300,000、Indirect Cost: ¥11,490,000)
Fiscal Year 2007: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Fiscal Year 2006: ¥13,130,000 (Direct Cost: ¥10,100,000、Indirect Cost: ¥3,030,000)
Fiscal Year 2005: ¥14,690,000 (Direct Cost: ¥11,300,000、Indirect Cost: ¥3,390,000)
Fiscal Year 2004: ¥15,080,000 (Direct Cost: ¥11,600,000、Indirect Cost: ¥3,480,000)
Keywordsruminants / bovine / water buffalo / functional gene / punon gene / calpine gene / native animals / genetic resource / アドレナリン受容体遺伝子 / セロトニン受容体遺伝子 / MC1遺伝子 / ウシ毛色変異 / ヘモグロビン / 遺伝的変異性 / ヒツジ / ヤギ / 遺伝的分化 / 遺伝資源保全 / 遺伝資源利用
Research Abstract

We have collected several thousands of DNA samples of ruminants, such as cattle, water buffaloes, sheep, goats, pigs, etc, in Japan and Asian countries through overseas scientific surveys and present research project Those invaluable DNA samples were data-filed by the present investigators in order to facilitate them to be supplied far researchers elsewhere. On the other hand, we analyzed those samples to get knowledge of the genetic-variability and -differentiation between local populations, and genotypic variations of several functional genes.
1.Research on genetic differentiation between populations
(1) Domestic pigs and wild boars from respective areas of South and Southeast Asian continent were analyzed of the r mtDNA haplotypes, The result showed that some pigs carried identical mtDNA haplotypes to those of wild boars inhabiting same area, i.e. polyphyletic origin of the pig.
2.Researches on genotypic variations of ruminant functional genes
(1) Expression of a cluster of genes related to regulates of seasonal breeding of animals was examined by methods of system biology, we found that the TSH. elevation in MBH increased DIO2 gene expression followed by other gene expressions, indicating TSH in MBH is a trigger for the photoperiodic activities.
(2) Polymorphism in B2C high-sulfur wool protein alleles was examined in sheep from China and East Asia and compared to European breeds. The local breeds of northern part of the area showed a similar allelic compositions to European breeds, but the southern local populations were marked different from them in the allelic frequencies.
(3)Purion protein genotypes were examined in a variety of local or native populations, and found the scrapie sensitive genotype ARQ/ARQ is highly prevalent in East Asian local breeds or native populations.

Report

(5 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (36 results)

All 2008 2007 2006 2005 2004 Other

All Journal Article (29 results) (of which Peer Reviewed: 5 results) Presentation (2 results) Book (4 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Mitochondrial diversity of native pigs in the mainland South and South east Asian countries and its relationships between local and wild boars.2008

    • Author(s)
      K. Tanaka, Y. Maeda, H. Mannen, K. Nomura, T. Namikawa, et. al.
    • Journal Title

      Animal Science Journal 79(4)(印刷中)

    • NAID

      10025369985

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Thyrotrophin in the pars tuberalis triggers photoperiodic response.2008

    • Author(s)
      N. Nakao, T. Namikawa, S. Ebihara, T. Yoshimura, et. al.
    • Journal Title

      Nature 452

      Pages: 317-322

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Discrimination of Korean cattle (Hanwoo) using DNA markers derived from SNPs in bovine mito- chondrial and SRY genes2008

    • Author(s)
      Yoon, D., Y.S. Kwon, K.Y. Lee, W.Y. Jung, S. Sasazaki, H. Mannen, J.T. Jeon, J.H. Lee
    • Journal Title

      Asian-Australasian Journal of Animal Science 21

      Pages: 25-28

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Common erythrocyte antigens among cattle and their close relatives revealed by analysis of monoclonal antibodies2008

    • Author(s)
      Nomura, K., K. Kurogi, M. Morita, M. Kanemaki, E. Saitoh, S. Kawakami, C. Cho, Sutopo, M.O. Faruque, T. Amano
    • Journal Title

      Journal of Agricultural Sciences. TUA 53(in press)

    • NAID

      110006668140

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Mitochondrial diversity of native pigs in the mainland South and Southeast Asian countries and its relationships between local and wild boars2008

    • Author(s)
      Tanaka, K., Y. Iwaki, T. Takizawa, T. Dorji, G. Tsering, Y. Kuroswa, Y. Maeda, H. Mannen, K. Nomura, V.-B. Dang, L. Chuum-Phith, B. Bouahom, Y. Yamamoto, T. Daing, T. Namikawa
    • Journal Title

      Animal Science Journal 79(4)(in press)

    • NAID

      10025369985

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Thyrotrophin in the pars tuberalis triggers photoperiodic response2008

    • Author(s)
      Nakao, N., H. Ono, T. Yamamura, T. Anraku, T. Takagi, K. Higashi, S. Yasuo, Y. Katou, S. Kageyama, Y. Uno, T. Kasukawa, M. Iigo, P.J. Sharp, A. Iwasawa, Y. Suzuki, S. Sugano, T. Niimi, M. Mizutani T. Namikawa, S. Ebihara, H.R. Ueda, T. Yoshimura
    • Journal Title

      Nature 452

      Pages: 317-322

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Discrimination of Korean cattle(Hanwoo)using DNA markers derived from SNPs in bovine mitochondrial and SRY genes.2008

    • Author(s)
      Yoon, D., Y. S. Kwon, K. Y. Lee, W. Y. Jung, S. Sasazaki, et. al.
    • Journal Title

      Asian-Australasian Journal of Animal Science, 21

      Pages: 25-28

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genomic expansion of the Bov-A2 retroposon relating to phylogeny and breed management.2007

    • Author(s)
      Onami, J., M. Nikaido, H. Mannen and N. Okada.
    • Journal Title

      Mammalian Genome 18

      Pages: 187-196

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Stearoyl-CoA desaturase mRNA expression during bovine adipocyte differentiation in primary culture derived from Jananese Black and Holstein rattle Aclan Austral2007

    • Author(s)
      Ohsaki, H., T. Sawa, S. Sasazaki, K. Kano, M. Taniguchi, F. Mukai, H. Mannen
    • Journal Title

      Journal of Animal Science 148

      Pages: 629-634

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] The traditional cattle breeding system in Bhutan : Genetic implication in the hybrid production process2007

    • Author(s)
      Namikawa, T., D. Tashi, M. Kurachi, T. Yamaaata, Y. Kurosawa, Y. Yamamoto
    • Journal Title

      Report of the Society for Researches on Native Livestock 24

      Pages: 61-68

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Genotype of bovine sterol regulatory element binding protein-1(SREBP-1)is associated with fatty acid composition in Japanese Black cattle.2007

    • Author(s)
      Hoashi, S., N. Ashida, H. Ohsaki, T. Utsugi, S. Sasazaki, M. Taniguchi, K. Oyama, F. Mukai and H. Mannen
    • Journal Title

      Mammalian Genome 18

      Pages: 880-886

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The novel polymorphism of the beta 3-adrenergic receptor gene and its distribution in domestic pigs and wild boars in Asia2007

    • Author(s)
      Tanaka, K., Iwaki, Y., Mannen, H., Maeda, Y., Namikawa.T., et al.
    • Journal Title

      Animal Science Journal 78(3)(in press)

    • NAID

      10021225083

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Sire-maternal grandsire model and sire model in estimation of genetic parameters for average daily gain and carcass traits of Japanese black cattle.2006

    • Author(s)
      Kim, J-B., Lee, C., Tsuyuki, T., Shimomogiri, T., Maeda, Y.et al.
    • Journal Title

      Asian-Australasian Journal of Animal Science 19

      Pages: 1678-1684

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Breed Discrimination using DNA Markers derived from AFLP in Japanese Beef cattle.2006

    • Author(s)
      Sasazaki, S., Imada, T., Mutho, H., Yoshizawa, K., Mannen, H.
    • Journal Title

      Asian-Australasian Journal of Animal Science 19

      Pages: 1106-1110

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Mitochondrial DNA variation and genetic relationship in Japanese and Korean cattle.2006

    • Author(s)
      Sasazaki, S., Odahara, S., Hiura, C., Mannen.H.
    • Journal Title

      Asian-Australasian Journal of Animal Science 19

      Pages: 1394-1398

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Assignment of 204 genes localized on HSA 17 to a porcine RH(IMpRH)map to generate a dense comparative map between pig and human/mouse.2006

    • Author(s)
      Shimogiri, T., Kiuchi, S., Maeda, Y., Roher, G.A., et al.
    • Journal Title

      Cytogenetics and Genome Research 112

      Pages: 114-120

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A tandem gene duplication followed by recruitment of a retrotransposon created the paralogous bucentaur gene in the ancestral ruminant.2006

    • Author(s)
      Iwashita, S., Tanaka, K., Endo, H., David, L., et al.
    • Journal Title

      Molecular Biology and Evolution 23

      Pages: 798-806

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Mitochondrial DNA variation and genetic relationship in Japanese and Korean cattle.2006

    • Author(s)
      Sasazaki, S., Odahara, S., Hiura, C., Mannen, H., et al.
    • Journal Title

      Asian-Australasian Journal of Animal Science (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Transcriptional profiling of muscle tissue in growing Japanese Black to identify genes involved with the development of intramuscular fat.2005

    • Author(s)
      Wang, Y.H., Reverter, A., Mannen, H., Lehnert, S.A., et al.
    • Journal Title

      Australian Journal of Experimental Agriculture 45

      Pages: 809-820

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Transcriptional profiling of muscle tissue in two breeds of beef cattle.2005

    • Author(s)
      Wang, Y.H., Byrne, K.A., McWilliam, S.M., Mannen, H., et al.
    • Journal Title

      Mammalian Genome 16

      Pages: 201-210

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Allele Frequencies of the Extension locus encoding the melanocortin-1 receptor(MC1R)in Japanese and Korean cattle.2005

    • Author(s)
      Sasazaki, S., Usui, M., Mannen, H., Tsuji.S., et al.
    • Journal Title

      Animal Science Journal 76

      Pages: 129-132

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Genealogical relationship between pedigree and microsatellite information, and analysis of genetic structure of a highly inbred Japanese Black cattle strain.2004

    • Author(s)
      Sasazaki, S., Honda, T., Fukushima, M., Oyama, K., Mannen, H.
    • Journal Title

      Asian-Australasian Journal of Animal Science 17

      Pages: 1355-1359

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Trace of native cattle in Japanese Holstein assessed by mitochondrial DNA sequence polymorphism.2004

    • Author(s)
      Tsuji, S., H.Mannen, F.Mukai, M.Shojo, K.Oyama, T.
    • Journal Title

      Journal of Dairy Science 87

      Pages: 3071-3075

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Differences in Stearoyl-CoA Desaturase mRNA levels between Japanese Black and Holstein cattle.2004

    • Author(s)
      Taniguchi, M., H.Mannen, K.Oyama, A.Oka, H.Watanabe, T.
    • Journal Title

      Livestock Production Scinece 87

      Pages: 215-220

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Development of Breed Identification Markers derived from AFLP in beef cattle.2004

    • Author(s)
      Sasazaki, S., K.Itoh, S.Arimitsu, T.Imada, A.Mannen, H.
    • Journal Title

      Meat Science 67

      Pages: 275-280

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Genotypes of stearoyl-CoA desaturase affect on the difference of fatty acid composition of Japanese Black steers.2004

    • Author(s)
      Taniguchi, M., T.Utsugi, H.Mannen, S.Tsuji
    • Journal Title

      Mammalian Genome 14

      Pages: 142-148

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Cytogenetic comparison of the lesser mouse deer (Tragulus javanicus) and thegreater mouse deer (T.napu).2004

    • Author(s)
      Tanaka, K., D.B.Ismal, Maruyama, S., Matsubayashi, H., Endo, H.
    • Journal Title

      Caryologia 57-3

      Pages: 229-243

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Genetic diversity of Bhutanese Cattle analyzed by mitochondrial DNA variation.

    • Author(s)
      Lin, B., Tanaka, K., Yamamoto, Y., Namikawa, T., Mannnen, H., et al.
    • Journal Title

      Journal of Animal Genetics. (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Proteomic comparison between Japanese Black and Holstein cattle by two-dimensional gel electrophoresis and identification of proteins.

    • Author(s)
      Ohsaki, H., Okada, M., Mukai, F., Tsuruta, H., Mannen, H., et al.
    • Journal Title

      Asian-Australasian Journal of Animal Science (in press)

    • Related Report
      2006 Annual Research Report
  • [Presentation] アジア緬羊集団におけるプリオンの遺伝子多型.2007

    • Author(s)
      角田健司, 並河鷹夫
    • Organizer
      目本畜産学会第107回大会
    • Place of Presentation
      麻布大学,神奈川県
    • Year and Date
      2007-03-29
    • Related Report
      2007 Annual Research Report
  • [Presentation] アジア緬羊集団におけるプリオンの遺伝子多型.2007

    • Author(s)
      角田健司, 並河鷹夫
    • Organizer
      日本畜産学会第107回大会
    • Place of Presentation
      麻布大学、神奈川
    • Year and Date
      2007-03-27
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 17. Duality in Bos indices mtDNA diversity: support for geographical complexity in zebu domestication. In: The Evolution and History of Human Populations in South Asia(Petraglia, M. D. and Allchin, B., eds.)2007

    • Author(s)
      Magee, D. A., H. Mannen and D. G. Bradley
    • Publisher
      Springer
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 「遺伝子の窓から見た動物たち : フィールドと実験室をつないで」1.ウシのへモグロビンのアミノ酸配列から系統関係を調べる。2006

    • Author(s)
      並河鷹夫(分担執筆)
    • Publisher
      京都大学学術出版会
    • Related Report
      2006 Annual Research Report
  • [Book] 生鮮食肉の品種鑑別、食品鑑定技術ハンドブック(太田英明, 湯川剛一郎, 丹 敬二, 土肥由長編)2005

    • Author(s)
      万年英之
    • Publisher
      Science Forum
    • Related Report
      2004 Annual Research Report
  • [Book] 国内産牛肉のDNA品種鑑定法.最新・食品分析法

    • Author(s)
      万年英之, 笹崎晋史
    • Publisher
      (社)日本食品科学工学会 編(印刷中)
    • Related Report
      2005 Annual Research Report
  • [Patent(Industrial Property Rights)] 一塩基多型を用いた牛の個体識別法と親子鑑別法2008

    • Inventor(s)
      万年英之・向井文雄・笹崎晋史・本多 健
    • Industrial Property Rights Holder
      万年英之・向井文雄・笹崎晋史・本多 健
    • Filing Date
      2008-03-17
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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