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Construction of an human embryo anatomical database using high resolution MR microscope

Research Project

Project/Area Number 16206012
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied physics, general
Research InstitutionUniversity of Tsukuba

Principal Investigator

KOSE Katsumi  University of Tsukuba, Graduate School of Applied Sciences, Professor (60186690)

Project Period (FY) 2004 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥50,700,000 (Direct Cost: ¥39,000,000、Indirect Cost: ¥11,700,000)
Fiscal Year 2007: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2006: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2005: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2004: ¥36,270,000 (Direct Cost: ¥27,900,000、Indirect Cost: ¥8,370,000)
KeywordsMRI / NMR / MR microscope / Human embryo / embryo / 3D image / super-conducting magnet / MRI / 超並列
Research Abstract

Our group recently reported 3D MR microscopic images of 1,204 chemically fixed human embryos selected from the Kyoto Collection of Human Embryos. The number of image matrix for these images was limited to 128×128×256 voxels primarily because of the magnetic field strength (2.34 T) used for the image acquisition. In the present study we developed a 9.4 T MR microscope with a wide dynamic range, and acquired 3D MR microscopic images of human embryos using a 256×256×512 image matrix. Carnegie Stage (CS) 16 to 22 human embryos were selected from the Kyoto Collection of Human Embryos. The specimens were stored in NMR sample tubes filled with formalin solution and used for MR microscopy measurements. The MR microscope was developed using a 9.4 T vertical wide bore superconducting magnet, a home-built gradient probe, and a MRI console. The MRI receiver system consisted of two. MRI receivers with different gain (typically 37dB (spin-echo) / 25dB (gradient-echo) difference). NMR signals were simultaneously acquired using the two receiver channels, and MRI datasets in the k-space were synthesized from those acquired in the two channels. A 3D gradient-echo (TR=100ms, TE=5ms) pulse sequence was used for the 256×256×512 voxel image acquisition. The presented results demonstrated the effectiveness of our system. In conclusion, large matrix and high resolution MR microscopic images of human embryos were acquired using a high magnetic field and a parallel receiver system and various structures of the embryos were clearly visualized.

Report

(5 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (35 results)

All 2007 2006 2005 2004 Other

All Journal Article (11 results) (of which Peer Reviewed: 4 results) Presentation (19 results) Book (1 results) Remarks (2 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Imaging of Large Collection of Human Embryo Using a super-Parallel MR Microscope.2007

    • Author(s)
      Yoshimasa Matsuda, et al.
    • Journal Title

      Magn Reson Med Sci. 6

      Pages: 139-146

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Imaging of a Large Collection of Human Embryo Using a super-Parallel MR Microscope2007

    • Author(s)
      Yoshimasa Matsuda
    • Journal Title

      Magn Reson Med Sci 6

      Pages: 139-146

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Imaging of a Large Collection of Human Embryo Using a super-Parallel MR Microscope.2007

    • Author(s)
      Yoshimasa Matsuda, et. al.
    • Journal Title

      Magn Reson Med Sci. 6

      Pages: 139-146

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of a compact MRI for measurement of trabecular bone microstructure of the finger2007

    • Author(s)
      Nachiko Iita et al.
    • Journal Title

      Magn Reson Med 57

      Pages: 272-277

    • Related Report
      2006 Annual Research Report
  • [Journal Article] A solution to the dynamic range problem in MRI using a parallel image acquisition.2006

    • Author(s)
      Yosuke Otake, et al.
    • Journal Title

      Concepts Magn Reson (Magn Reson Engineerling) 29B

      Pages: 161-167

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] A solution to the dynamic range problem in MRI using a parallel image acquisition.2006

    • Author(s)
      Yosuke Otake et al.
    • Journal Title

      Concepts Magn Reson (Magn Reson Engineerling) 29B

      Pages: 161-167

    • Related Report
      2006 Annual Research Report
  • [Journal Article] コンパクトMRIの臨床応用2006

    • Author(s)
      巨瀬勝美, 他
    • Journal Title

      日獨医報 51・4

      Pages: 625-631

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Development of a Compact Mouse MRI Using a Yokeless Permanent Magnet.2005

    • Author(s)
      Tohru Shirai, et al.
    • Journal Title

      Magnetic Resonance Medical Science 4

      Pages: 137-143

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Trabecular bone volume fraction measurements of a large number of subjects using a compact MRI.2005

    • Author(s)
      Sadanori Tomiha et al.
    • Journal Title

      Magnetic Resonance Imaging 23

      Pages: 1011-1015

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Development of a Compact Mouse MRI Using a Yokeless Permanent Magnet.2005

    • Author(s)
      Tohru Shirai et al.
    • Journal Title

      Magnetic Resonance Medical Science 4

      Pages: 137-143

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Development of a Compact MRI System for Trabecular Bone Volume Fraction Measurements2004

    • Author(s)
      Kose et al.
    • Journal Title

      Magnetic Resonance in Medicine 52

      Pages: 440-444

    • Related Report
      2004 Annual Research Report
  • [Presentation] ヒト胚子標本における各種緩和時間強調撮像2007

    • Author(s)
      大矢和輝
    • Organizer
      第35回日本磁気共鳴医学会大会
    • Place of Presentation
      神戸
    • Year and Date
      2007-09-28
    • Related Report
      2007 Annual Research Report
  • [Presentation] Measurements of NMR parameter weighted images in chemically fixed human embryos2007

    • Author(s)
      K. Oya, et al
    • Organizer
      International Conference on Magnetic Resonance Microscopy
    • Place of Presentation
      アーヘン(ドイツ)
    • Year and Date
      2007-09-03
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] Measurements of NMR parameter weighted images in chemically fixed humanembryos2007

    • Author(s)
      K. Oya, K. Kose, K. Shiota
    • Organizer
      International Conference on Magnetic Resonance Microscopy
    • Place of Presentation
      Aachen, Germany
    • Year and Date
      2007-09-03
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] ヒト胚子標本におけるNMRパラメタ強調撮像2007

    • Author(s)
      大矢和輝
    • Organizer
      第11回NMRマイクロイメージング研究会
    • Place of Presentation
      東京
    • Year and Date
      2007-08-06
    • Related Report
      2007 Annual Research Report
  • [Presentation] MR Microscopy of Chemically Fixed Human Embryos with a Large Image Matrix2006

    • Author(s)
      Yousuke Otake, et al
    • Organizer
      14th Annual Meeting of the International Society for Magnetic Resonance in Medicine
    • Place of Presentation
      Seattle, Washington
    • Year and Date
      2006-05-08
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] A Solution for the Dynamic Range Problem by Means of a Parallel Image Acquisition2006

    • Author(s)
      Yousuke Otake, et al
    • Organizer
      14th Annual Meeting of the International Society for Magnetic Resonance in Medicine
    • Place of Presentation
      Seattle, Washington
    • Year and Date
      2006-05-08
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] High resolution 3D MR microscopy of chemically-fixed human embryos for 3D anatomical database2005

    • Author(s)
      Yousuke Otake, et al
    • Organizer
      8th International Conference on Magnetic Resonance Microscopy
    • Place of Presentation
      Utsunomiya
    • Year and Date
      2005-08-24
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 3D MR microscopy of a large number of chemically-fixed human embryos using a super-parallel MR microscope2005

    • Author(s)
      Yoshimasa Matsuda, et al.
    • Organizer
      8th International Conference on Magnetic Resonance Microscopy
    • Place of Presentation
      Utsunomiya
    • Year and Date
      2005-08-24
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] High resolution 3D MR microscopy of chemicallyfixed human embryos for 3D anatomical database2005

    • Author(s)
      Y. Otake, S. Hara, S. Handa, K. Kose, S. Yamada, K. Shiota
    • Organizer
      8th International Conference on Magnetic Resonance Microscopy
    • Place of Presentation
      Utsunomiya
    • Year and Date
      2005-08-24
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 3D MR microscopy of a large number of chemicallyfixed human embryos using a super-parallel MR microscope2005

    • Author(s)
      Y. Matsuda, S. Ono, S. Handa, Y. Otake, K. Kose, T. Haishi, S. Yamada, C. Uwabe, K. Shiota
    • Organizer
      8th International Conference on Magnetic Resonance Microscopy
    • Place of Presentation
      Utsunomiya
    • Year and Date
      2005-08-24
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 3D MR Microscopy of the Human Embryo Collection (Kyoto Collection) : Final Report for 1, 200 Human Embryos2005

    • Author(s)
      Yoshimasa Matsuda, et al.
    • Organizer
      13th Annual Meeting of the International Society for Magnetic Resonance in Medicine
    • Place of Presentation
      Florida
    • Year and Date
      2005-05-08
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 8-Channel Linear Array Gradient Probe for the Super-Parallel MR Microscope2005

    • Author(s)
      Yosuke Otake, et al
    • Organizer
      13th Annual Meeting of the International Society for Magnetic Resonance in Medicine
    • Place of Presentation
      Florida
    • Year and Date
      2005-05-08
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 3D MR Microscopy of a large human embryo collection (Kyoto Collection) to create a 3D image database for human embryology2005

    • Author(s)
      K. Kose, Y. Matsuda, S. Ono, S. Handa, Y. Otake, T. Haishi, K. Shiota
    • Organizer
      13th Annual Meeting of the International Society for Magnetic Resonance in Medicine
    • Place of Presentation
      Miami Beach, Florida
    • Year and Date
      2005-05-08
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 8-Channel Linear Array Gradient Probe for the Super-Parallel MR Microscope2005

    • Author(s)
      Y. Otake, Y. Matsuda, K. Kose
    • Organizer
      13th Annual Meeting of the International Society for Magnetic Resonance in Medicine
    • Place of Presentation
      Miami Beach, Florida
    • Year and Date
      2005-05-08
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 3D MR Microscopy of a large human embryo collection (Kyoto Collection) to create a 3D image database for human embryology2004

    • Author(s)
      Katsumi Kose, et al
    • Organizer
      16th International Congress of the IFAA
    • Place of Presentation
      Kyoto
    • Year and Date
      2004-08-23
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 3D MR Microscopy of a Large Human Embryo Collection (Kyoto Collection) to Create a 3D Image Database for Human Embryology2004

    • Author(s)
      Yoshimasa Matsuda, et al.
    • Organizer
      12th, Annual Meeting of the International Society for Magnetic Resonance in Medicine
    • Place of Presentation
      Kyoto
    • Year and Date
      2004-05-17
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Harmonic Gradient Coil for Parallel MR Microscopy2004

    • Author(s)
      Yoshimasa Matsuda, et al.
    • Organizer
      12th, Annual Meeting of the International Society for Magnetic Resonance in Medicine
    • Place of Presentation
      Kyoto
    • Year and Date
      2004-05-17
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 3D MR Microscopy of a Large Human Embryo Collection (Kyoto Collection) to Create a 3D Image Database for Human Embryology2004

    • Author(s)
      Y. Matsuda, S. Ono, S. Handa, T. Haishi, K. Kose
    • Organizer
      12^<Th> Annual Meeting of the International Society for Magnetic Resonance in, Medicine
    • Place of Presentation
      Kyoto
    • Year and Date
      2004-05-17
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Harmonic Gradient Coil for Parallel MR Microscopy2004

    • Author(s)
      Y. Matsuda, T. Haishi, S. Utsuzawa, K. Kose
    • Organizer
      12^<Th> Annual Meeting of the International Society for Magnetic Resonance in Medicine
    • Place of Presentation
      Kyoto
    • Year and Date
      2004-05-17
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] コンパクトMRI2004

    • Author(s)
      巨瀬 勝美 編著
    • Total Pages
      196
    • Publisher
      共立出版
    • Related Report
      2004 Annual Research Report
  • [Remarks] 「研究成果報告書概要(和文)」より

    • URL

      http://mrlab.frsc.tsukuba.ac.jp/human_embryos/

    • Related Report
      2007 Final Research Report Summary
  • [Remarks]

    • URL

      http://mrlab.frsc.tsukuba.ac.jp/human_embryos/

    • Related Report
      2007 Annual Research Report
  • [Patent(Industrial Property Rights)] 磁気共鳴撮像装置および撮像方法2006

    • Inventor(s)
      大竹陽介, 巨瀬勝美, 拝師智之
    • Industrial Property Rights Holder
      大竹陽介, 巨瀬勝美, 拝師智之
    • Filing Date
      2006-02-13
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 特許権2006

    • Inventor(s)
      大竹 陽介, 巨瀬 勝美, 拝師 智之
    • Industrial Property Rights Holder
      筑波大学
    • Industrial Property Number
      2006-034978
    • Filing Date
      2006-02-13
    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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