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Design of shoots based on the regulation of leaf formation in rice

Research Project

Project/Area Number 16208002
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Breeding science
Research InstitutionThe University of Tokyo

Principal Investigator

MAGATO Yasuo  The University of Tokyo, Graduate School of Agricultural and Life Sciences, Professor, 大学院農学生命科学研究科, 教授 (10143413)

Co-Investigator(Kenkyū-buntansha) KUSABA Makoto  The University of Tokyo, Graduate School of Agricultural and Life Sciences, Associate Professor, 大学院農学生命科学研究科, 助教授 (20370653)
ITOH Jun-ichi  The University of Tokyo, Graduate School of Agricultural and Life Sciences, Assistant, 大学院農学生命科学研究科, 助手 (30345186)
Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥50,050,000 (Direct Cost: ¥38,500,000、Indirect Cost: ¥11,550,000)
Fiscal Year 2006: ¥13,000,000 (Direct Cost: ¥10,000,000、Indirect Cost: ¥3,000,000)
Fiscal Year 2005: ¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Fiscal Year 2004: ¥20,930,000 (Direct Cost: ¥16,100,000、Indirect Cost: ¥4,830,000)
Keywordsrice / shoot / plastochron / phyllotasxy / dorsoventrality / mutant / shoot apical meristem / SHOOTLESS / 向背軸
Research Abstract

This research project aims to obtain basic understandings for designing novel architecture of plants, The architecture of the above ground part of plants is mainly determined by the temporal and spatial arrangement of leaves and branches, which are the product of the shoot apical meristem (SAM). Because branches develop at the axils of leaves, primarily important questions are how leaves are formed from the SAM and how they develop to maturity.
We newly identified flattened shoot meristem (fsm) mutant that frequently died during the early vegetative phase. The SAM of fsm was reduced and eventually consumed by leaf primordia. The FSM gene is estimated to encode a chromatin assembly factor that is involved in the regulation of cell cycle, and is expressed in the G1 phase. Although the fsm showed long cell cycle period, developmental timing of leaves (e.g., plastochron) was not affected.
We cloned the causal gene of adl1 mutant that showed adaxialized leaves. The ADL1 encodes calpain-like c … More ysteine protease. Interrestinly, shootless3 (shl3) that lacks apical region of embryo and shows shootless phenotype was revealed to be a strong allele of ADL1. Thus, ADL1 is involved in both the regulation of adaxial-abaxial pattern formation of leaves and the establishment of apical region of embryo.
As for temporal regulation of leaf formation, we analyzed plastochron 2 (pla2) mutant that showed short plastochron and small leaves. The PLA2 encodes a RNA binding protein and is orthologous to maize Terminal ear1 gene. PLA2 is expressed in leaf primordia but not in the SAM. Because pla2 leaves matured precociously, primary function of PLA2 is considered to regulate leaf maturation rate.
The fish bone (fib) mutant exhibits pleiotropic phenotypes including narrow leaves, large lamina joint angle, reduced vascular bundles, dwarfism, reduced numbers of crown and lateral roots and agravitropism. These phenotypes are estimated to be caused by the reduced polar auxin transport. The FIB gene encodes a metabolic enzyme of unknown function. Since Arabidopsis mutants of the homilogs of FIB also showed similar abnormalities and reduced polar auxin transport, FIB would be a novel factor for polar auxin transport in plants. Less

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (36 results)

All 2007 2006 2005 2004

All Journal Article (35 results) Book (1 results)

  • [Journal Article] Phenotypic data collection of a mutant panel for the functional analysis of rice genes2007

    • Author(s)
      Miyao, A.
    • Journal Title

      Plant Mol. Biol. 63

      Pages: 625-635

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] OsNAM and OsCUC3 are expressed specifically in organ boundaries2007

    • Author(s)
      Hibara K
    • Journal Title

      Rice Genetics Newsletter 23

      Pages: 96-97

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phenotypic data collection of a mutant panel for the functional analysis of rice genes2007

    • Author(s)
      Miyao, A., Iwasaki, Y., Kitano, H., Itoh, J.-I., Maekawa, M., Murata, K., Yatou, O., Nagato, Y., Hirochika, H.
    • Journal Title

      Plant Mol.Biol. 63

      Pages: 625-635

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] OsNAM and OsCUC3 are expressed specifically in organ boundaries2007

    • Author(s)
      Hibara K., Nagato, Y.
    • Journal Title

      Rice Genet.Newslett. 23

      Pages: 96-97

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] PLASTOCHRON 2 regulates leaf initiation and maturation in rice2006

    • Author(s)
      Kawakatsu, T.
    • Journal Title

      Plant Cell 18

      Pages: 612-625

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] PLASTOCHRON 2 regulates leaf initiation and maturation in rice2006

    • Author(s)
      Kawakatsu, T., Miyoshi, K., Itoh, J.-I., Kurata, N., Veit, B., Nagato, Y.
    • Journal Title

      Plant Cell 18

      Pages: 612-625

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Formation, maintenance and function of the shoot apical meristem in rice2006

    • Author(s)
      Itoh, J.-I., Sato, Y., Nagato, Y., Matsuoka, M.
    • Journal Title

      Plant Mol.Biol. 60

      Pages: 827-842

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] OsNAM and OsCUC3 are expressed specifically in organ boundaries2006

    • Author(s)
      Hibara K
    • Journal Title

      Rice Genetics Newsletter 22(in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] PLASTOCHRON 2 regulates leaf initiation and maturation in rice.2006

    • Author(s)
      Kawakatsu, T.
    • Journal Title

      Plant Cell 18

      Pages: 612-625

    • Related Report
      2005 Annual Research Report
  • [Journal Article] PLASTOCHRON3 gene regulates leaf initiation rate and termination of vegetative phase2005

    • Author(s)
      Kawakatsu, T.
    • Journal Title

      Rice Genet. Newslett. 21

      Pages: 36-39

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] ABERRANT PANICLE ORGANIZATION 1 gene temporally regulates meristem identity in rice2005

    • Author(s)
      Ikeda, K.
    • Journal Title

      Dev. Biol. 282

      Pages: 349-360

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] APICAL DISPLACEMENT 1 gene regulates apical-basal pattern formation in rice embryo2005

    • Author(s)
      Kinae, T.
    • Journal Title

      Plant Sci. 168

      Pages: 1345-1351

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Rice plant development : from zygote to spikelet2005

    • Author(s)
      Itoh, J-I.
    • Journal Title

      Plant Cell Physiol. 46

      Pages: 23-47

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] PLASTOCHRON3 gene regulates leaf initiation rate and termination of vegetative phase2005

    • Author(s)
      Kawakatsu, T., Nagato, Y.
    • Journal Title

      Rice Genet.Newslett. 21

      Pages: 36-39

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] ABERRANI PANICLE ORGANIZATION 1 gene temporally regulates meristem identity in rice2005

    • Author(s)
      Ikeda, K., Nagasawa, N., Nagato, Y.
    • Journal Title

      Dev.Biol. 282

      Pages: 349-360

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] APICAL DISPLACEMENT 1 gene regulates apical-basal pattern formation in rice embryo2005

    • Author(s)
      Kinae, T., Hong, S.-K.1, Nagato, Y.
    • Journal Title

      Plant Sci. 168

      Pages: 1345-1351

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Rice plant development : from zygote to spikelet2005

    • Author(s)
      Itoh, J-I., Nonomura, K-I., Ikeda, K., Yamaki, S., Inukai, Y., Yamagishi, H., Kitano, H., Nagato, Y.
    • Journal Title

      Plant Cell Physiol. 46

      Pages: 23-47

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Petunia NO APICAL MERISTEM ortholog, OsNAM, is expressed in the embryonic SAM and organ boundary in rice2005

    • Author(s)
      Hibara, K.
    • Journal Title

      Rice Genetics Newsletter 21

      Pages: 83-85

    • Related Report
      2005 Annual Research Report
  • [Journal Article] GYPSY EMBRYO gene specifies embryo position in seed through regulating ovule development in rice2005

    • Author(s)
      Yamaki, S.
    • Journal Title

      Planta 222

      Pages: 408-417

    • Related Report
      2005 Annual Research Report
  • [Journal Article] ABERRANT PANICLE ORGANIZATION 1 gene temporally regulates meristem identity in rice2005

    • Author(s)
      Ikeda, K.
    • Journal Title

      Developmental Biology 282

      Pages: 349-360

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Rice plant development : from zygote to spikelet2005

    • Author(s)
      Itoh, J.-I.
    • Journal Title

      Plant and Cell Physiology 46

      Pages: 23-47

    • Related Report
      2005 Annual Research Report
  • [Journal Article] OPEN BEAK gene regulates floral morphogenesis in rice2005

    • Author(s)
      Horigome, A.
    • Journal Title

      Rice Genetics Newsletter 21

      Pages: 39-41

    • Related Report
      2005 Annual Research Report
  • [Journal Article] APICAL DISPLACEMENT 1 gene regulates apical-basal pattern formation in rice embryo2005

    • Author(s)
      Kinae, T.
    • Journal Title

      Plant Science 168(印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Rice plant development : from zygote to spikelet2005

    • Author(s)
      Itoh, J-I.
    • Journal Title

      Plant & Cell Physiology 46

      Pages: 23-47

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in rice2004

    • Author(s)
      Yamaguchi, T.
    • Journal Title

      Plant Cell 16

      Pages: 500-509

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2004 Annual Research Report
  • [Journal Article] Developmental course of inflorescence and spikelet in rice2004

    • Author(s)
      Ikeda, K
    • Journal Title

      Breed. Sci. 54

      Pages: 147-156

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Characterization of leaf lateral symmetry 1 mutant2004

    • Author(s)
      Obara, M.
    • Journal Title

      Breed. Sci. 54

      Pages: 157-163

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] PLASTOCHRON 1, a time keeper of leaf initiation in rice, encodes cytochrome P4502004

    • Author(s)
      Miyoshi, K.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 101

      Pages: 875-880

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in rice2004

    • Author(s)
      Yamaguchi, T., Nagasawa, N., Kawasaki, S., Matsuoka, M., Nagato, Y., Hirano, H.
    • Journal Title

      Plant Cell 16

      Pages: 500-509

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] (2004) Developmental course of inflorescence and spikelet in rice2004

    • Author(s)
      Ikeda, K., Sunohara, H., Nagato, Y
    • Journal Title

      Breed.Sci. 54

      Pages: 147-156

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Characterization of leaf lateral symmetry 1 mutant2004

    • Author(s)
      Obara, M., Ikeda, K., Itoh, J.-I., Nagato, Y.
    • Journal Title

      Breed.Sci. 54

      Pages: 157-163

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] PLASTOCHRON 1, a time keeper of leaf initiation in rice, encodes cytochrome P4502004

    • Author(s)
      Miyoshi, K., Ahn, B.O., Kawakatsu, T., Itoh, Y., Itoh, J.-I., Nagato, Y., Kurata, N.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 101

      Pages: 875-880

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA12004

    • Author(s)
      Suzaki, T.
    • Journal Title

      Development 131

      Pages: 5649-5657

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Characterization of leaf lateral symmetry 1 mutant2004

    • Author(s)
      Obara, M.
    • Journal Title

      Breeding Science 54

      Pages: 157-163

    • Related Report
      2004 Annual Research Report
  • [Journal Article] PLASTOCHRON 1, a time keeper of leaf initiation in rice encodes cytochrome P4502004

    • Author(s)
      Miyoshi, K.
    • Journal Title

      Proceedings of National Academy of Science, USA 101

      Pages: 875-880

    • Related Report
      2004 Annual Research Report
  • [Book] Formation, maintenance and function of the shoot apical meristem in rice in "Plant Molecular Biology"2006

    • Author(s)
      Itoh, J.-I.
    • Publisher
      Formation, maintenance and function of the shoot apical meristem in rice
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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