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Systematic and Comprehensive Analysis of Interferon Response induced by siRNA

Research Project

Project/Area Number 16300151
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biomedical engineering/Biological material science
Research InstitutionThe University of Tokyo

Principal Investigator

MIYAGISHI Makoto  The University of Tokyo, Faculty of Medicine, Project Associate Professor, 医学部附属病院, 特任助教授 (30323538)

Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥14,300,000 (Direct Cost: ¥14,300,000)
Fiscal Year 2005: ¥5,000,000 (Direct Cost: ¥5,000,000)
Fiscal Year 2004: ¥9,300,000 (Direct Cost: ¥9,300,000)
KeywordsInterferon Response / RNA interference / Biotechnology / siRNA / ジーンディスカバリー / アポトシス / RNAiライブラリー
Research Abstract

In mammalian cells, siRNAs have been used to induce RNA interference (RNAi) in an attempt to prevent nonspecific effects (including the interferon (IFN) response) which are caused by long double-stranded RNAs (dsRNAs) of more than 30 bp. In this project, we developed a novel and simple strategy for avoiding activation of the IFN response by dsRNA, and analyzed interferon pathway by means of siRNA library. We showed that modified hairpin-RNAs (mhRNAs) of more than 100 bp, with multiple specific point-mutations within the sense strand and transcribed from the U6 or tRNAVa1 promoters, can cause RNAi without inducing the IFN pathway genes. These findings should enhance the exploitation of RNAi in mammalian cells, especially in the field of RNAi therapy against pathogenic viruses. Furthermore the results from screening by siRNA library showed that apoptosis pathway induced by dsRNA include a JNK/SAPK-mediated mitochondrial pathway and an ERK2-related pathway.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (24 results)

All 2006 2005 2004

All Journal Article (23 results) Book (1 results)

  • [Journal Article] Intracellular-diced dsRNA has enhanced efficacy for silencing HCV RNA and overcomes variation in the viral genotype.2006

    • Author(s)
      Watanabe T, Sudoh M, Miyagishi, M., Akashi H, Arai M, Inoue K, Taira, K, Yoshiba M, Kohara M
    • Journal Title

      Gene Ther. (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Intracellular-diced dsRNA has enhanced efficacy for silencing HCV RNA and overcomes variation in the viral genotype.2006

    • Author(s)
      Watanabe T, Sudoh M, Miyagishi M, Akasi H, Arai M, Inoue K, Taira K, Yoshiba M, Kohara M.
    • Journal Title

      Gene Ther. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Intracellular-diced dsRNA has enhanced efficacy for silencing HCV RNA and overcomes variation in the viral genotype.2006

    • Author(s)
      Watanabe T, Sudoh M, Miyagishi M, Akashi H, Arai M, Inoue K, Taira K, Yoshiba M, Kohara M.
    • Journal Title

      Gene Ther. (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Escape from the interferon response associated with RNA interference using vectors that encode long modified hairpin-RNA2005

    • Author(s)
      Akashi, H., Miyagishi, M, Yokota, T., Watanabe, T., Hino, T., Nishina, K., Kohara, M., Taira, K.
    • Journal Title

      Mol. BioSyst. 1

      Pages: 382-389

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A20 is a negative regulator of IFN regulatory factor 3 signaling.2005

    • Author(s)
      Saitoh, T., Yamamoto, M., Miyagishi, M., Taira, K., Nakanishi, M., Fujuta, T., Akira, S., Yamamoto, N., Yamaoka, S.
    • Journal Title

      Journal of Immunology 174

      Pages: 1507-1512

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] siRNA becomes smart and intelligent.2005

    • Author(s)
      Miyagishi, M., Taira, K
    • Journal Title

      Nature Biotech. 23

      Pages: 946-947

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Genome-wide application of RNAi to the discovery of potential drug targets.2005

    • Author(s)
      Ito, M, Kawano, M., Miyagishi, M., Taira, K.
    • Journal Title

      Gene Ther. 12

      Pages: 95-100

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Analysis of double-stranded RNA-induced apoptosis pathways using interferon-response noninducible small interfering RNA expression vector library.2005

    • Author(s)
      Matsumoto, S., Miyagishi, M., Akashi, H., Nagai, R., Taira, K.
    • Journal Title

      J. Biol. Chem. 280

      Pages: 25687-25696

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Gene therapy for human small-cell lung carcinoma by inactivation of Skp-2 with virally mediated RNA interference.2005

    • Author(s)
      Suminoto, H., Yamagata, S., Shimizu, A., Miyoshi, H., Mizuguchi, H., Hayakawa, T., Miyagishi, M., Taira, K., Kawakami, Y.
    • Journal Title

      Gene Ther. 12

      Pages: 95-100

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Escape from the interferon response associated with RNA interference using vectors that encode long modified hairpin-RNA2005

    • Author(s)
      Akashi, H., Miyagishi, M., Yokota, T., Watanabe, T., Hino, T., Nishina, K., Kohara, M., Taira, K.
    • Journal Title

      Mol. BioSyst. 1

      Pages: 382-389

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A20 is a negative regulator of IFN regulatory factor 3 signaling.2005

    • Author(s)
      Saitoh, T., Yamamoto, M., Miyagishi, M., Taira, K., Nakanishi, M., Fujita, T., Akira, S., Yamamoto, N., Yamaoka, S.
    • Journal Title

      Journal of Immunology 174

      Pages: 1507-1512

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] siRNA becomes smart and intelligent.2005

    • Author(s)
      Miyagishi, M., Taira, K.
    • Journal Title

      Nature Biotech 23

      Pages: 946-947

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Genome-wide application of RNAi to the discovery of potential drug targets.2005

    • Author(s)
      Ito, M., Kawano, K., Miyagishi, M., Taira, K.
    • Journal Title

      Gene Ther. 12

      Pages: 95-100

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Analysis of double-stranded RNA-induced apoptosis pathways using interferon-response noninducible small interfering RNA expression vector library.2005

    • Author(s)
      Matsumoto, S., Miyagishi, M, Akashi, H., Nagai, R., Taira, K.
    • Journal Title

      J. Biol. Chem. 280

      Pages: 25687-25696

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Gene therapy for human small-cell lung carcinoma by inactivation of Skp-2 with virally mediated RNA interference.2005

    • Author(s)
      Sumimoto, H., Yamagata, S., Shimizu, A., Miyoshi, H., Mizuguchi, H., Hayakawa, T., Miyagishi, M., Taira, K, Kawakami, Y.
    • Journal Title

      Gene Ther. 12

      Pages: 95-100

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Escape from the interferon response associated with RNA interference using vectors that encode long modified hairpin-RNA2005

    • Author(s)
      Akashi, H., Miyagishi, M., Yokota, T., Watanabe, T., Hino, T., Nishina, K., Kohara, M., Taira, K.
    • Journal Title

      Mol.BioSyst. 1

      Pages: 382-389

    • Related Report
      2005 Annual Research Report
  • [Journal Article] siRNA becomes smart and intelligent.2005

    • Author(s)
      Miyagishi, M., Taira, K.
    • Journal Title

      Nature Biotech. 23

      Pages: 946-947

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Analysis of double-stranded RNA-induced apoptosis pathways using interferon-response noninducible small interfering RNA expression vector library.2005

    • Author(s)
      Matsumoto, S., Miyagishi, M, Akashi, H., Nagai, R., Taira, K.
    • Journal Title

      J.Biol.Chem. 280

      Pages: 25687-25696

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Control of siRNA expression using the Cre-loxP recombination system.2004

    • Author(s)
      Kasim V., Miyagishi M., Taira K.
    • Journal Title

      Nucleic Acids Res. 32

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.2004

    • Author(s)
      Yoneyama, M., Kikuchi, M., Natsukawa, T., Shinobu, N., Imaizumi, T., Miyagishi, M., Taira, K., Akira, S., Fujita, T.
    • Journal Title

      Nature Immunol. 5

      Pages: 730-737

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Effects on RNAi of the tight structure, sequence and position of the targeted region.2004

    • Author(s)
      Yoshinari, K., Miyagishi, M., Taira, K.
    • Journal Title

      Nucleic Acids Res. 32

      Pages: 691-699

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Generation of shRNAi expression library against the whole human transcripts.2004

    • Author(s)
      Miyagishi, M., Matsumoto, S., Taira, K.
    • Journal Title

      Virus Res. 102

      Pages: 117-124

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Optimization of an siRNA-expression system with an improved hairpin and its significant suppressive effects in mammalian cells.2004

    • Author(s)
      Miyagishi, M., Sumimoto, H., Miyoshi, H., Kawakami Y., Taira, K.
    • Journal Title

      Journal of Gene Medicine 6

      Pages: 715-723

    • Related Report
      2004 Annual Research Report
  • [Book] Design of intracellularly active ribozymes and siRNAs. In "Non-viral Gene Therapy : Gene Design and Delivery" (Taira, K., Kataoka, K., Niidome, T.(Eds.),)2005

    • Author(s)
      Miyagishi, M., Taira, K.
    • Publisher
      Springer-Verlag Tokyo
    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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