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Development of a large scale and phyiologically detailed mathematical model of the brainstem and spinal cord neuronal networks

Research Project

Project/Area Number 16300154
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biomedical engineering/Biological material science
Research InstitutionOsaka University

Principal Investigator

NOMURA Taishin  Osaka University, Graduate School of Engineering Science, Professor, 大学院基礎工学研究科, 教授 (50283734)

Co-Investigator(Kenkyū-buntansha) MATSUYAMA Kiyoji  Sapporo Medical University School of Medicine, Department of Basic Medical Science Dept.of Physiology (2), Associate Professor, 医学部, 助教授 (40209664)
Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥14,000,000 (Direct Cost: ¥14,000,000)
Fiscal Year 2006: ¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2005: ¥4,300,000 (Direct Cost: ¥4,300,000)
Fiscal Year 2004: ¥6,400,000 (Direct Cost: ¥6,400,000)
Keywordsmathematical model / hierarchy / network / object-oriented / spinal cord neural network / ion channel / neuron / dynamics / ニューロンモデル / 脊髄神経系 / アナログ・デジタルハイブリッド / 階層構造 / シミュレーション
Research Abstract

This study aimed at constructing a large scale and physiologically detailed mathematical model of the brainstem-spinal cord neuronal network. We tried, as much as possible, to reconstruct three dimensional structure and electrophysiological characteristics of the neuronal network based on previous knowledges in the field of neuroanatomy and electrophysiology including the conductances of ion channels of neurons. The modeling was performed using hierarchical and distributed representations of the network elements (from the ion channels, the cells, the sypnapses) to the network. To this end, we used thoroughly object-orinted modeling methodology, by which we developed a software system that could systematize large scale modeling and simulation processes. Using this software system, we constructed a brainstem spinal neuronal network model consisting of 224 biophysically plausible neuron models which were spatially distributed and synoptically connected by excitatory and inhibitory synapses in the brain-stem spinalcord of cat. The spatio-temporal dynamic of the model were then simulated using PC cluster with 64-CPU. It was confirmed that the model showed bursting and oscillatory electrical activity. The bursting activity was alternating between left and right of the network as well as extensor and flexor interneurons within each of the left and right spinal segment, similar to the electrical activity of locomotor or respiratory neural networks.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (13 results)

All 2006 2005

All Journal Article (13 results)

  • [Journal Article] Development of a support tool for multi-agent based biological modeling2006

    • Author(s)
      T.Kawazu, S.Odai, N.Shibuya, T.Nomura
    • Journal Title

      Proceedings of the 28th IEEE EMBS Annual International Conference 1・1

      Pages: 4163-4166

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] 生体の構造とダイナミクスの汎用モデリング支援ツールの開発2006

    • Author(s)
      河津俊宏, 渋谷典子, 尾臺晋介, 野村 泰伸
    • Journal Title

      日本生体医工学会誌 生体医工学 44・1

      Pages: 632-632

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] イオンチャネル・細胞・細胞ネットワークの構造とダイナミクス2006

    • Author(s)
      野村泰伸, 河津俊宏, 尾臺晋介, 鈴木康之
    • Journal Title

      第21回生体・生理工学シンポジウム論文集 1・1

      Pages: 107-108

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Development of a Support Tool for Modeling Biological Complexity2006

    • Author(s)
      T.Nomura, T.Kawazu, S.Odai, N.Shibuya
    • Journal Title

      Proceedings of World Congress on Medical Physics and Biomedical Engineering 2006 1・1

      Pages: 4108-4108

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Development of a support tool for multi-agent based biological modeling2006

    • Author(s)
      T.Kawazu, S.Odai, N.Shibuya, T.Nomura
    • Journal Title

      Proceedings of the 28th IEEE EMBS Annual International Conference Vol.1.1

      Pages: 4163-4166

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Development of a support tool for modeling structure and dynamics of biological organisms2006

    • Author(s)
      T.Kawazu, N.Shibuya, S.Odai, T.Nomura
    • Journal Title

      Transactions of Japanese Society for Medical and Biological Engineering Vol.44 Suppl.1

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Modeling Detail Structure and Dynamics of Ion Channels, Cells, and Cellular Networks2006

    • Author(s)
      T.Nomura, T.Kawazu, S.Odai, Y.Suzuki
    • Journal Title

      Proceedings of the 21th Symposium on Biological and Physiological Engineering Vol.1.1

      Pages: 107-108

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Development of a Support Tool for Modeling Biological Complexity2006

    • Author(s)
      T.Nomura, T.Kawazu, S.Odai, N.Shibuya
    • Journal Title

      Proceedings of World Congress on Medical Physics and Biomedical Engineering 2006. Vol.1.1

      Pages: 4108-4108

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] 生体の構造とダイナミクスの汎用モデリング支援ツールの開発2006

    • Author(s)
      河津俊宏, 渋谷典子, 尾臺晋介, 野村泰伸
    • Journal Title

      日本生体医工学会誌 生体医工学 44・1

      Pages: 632-632

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 生体の構造とダイナミクスの汎用モデリング支援ツールの開発2006

    • Author(s)
      河津俊宏 他
    • Journal Title

      日本生体医工学会論文誌 生体医工学 (印刷中)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 階層および機能的ネットワーク構造モデリング支援ツールの開発(第1報)2005

    • Author(s)
      渋谷典子 他
    • Journal Title

      電子情報通信学会技術報告書 MEとバイオサイバネティクス 11

      Pages: 21-24

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 神経疾患の理学療法とシミュレーション2005

    • Author(s)
      阿部和夫 他
    • Journal Title

      理学療法学 32・8

      Pages: 524-529

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 歩行・姿勢制御系のモデリング2005

    • Author(s)
      野村泰伸
    • Journal Title

      第20回生体生理工学シンポジウム論文集

      Pages: 305-306

    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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