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Proteomics and crystal structure analysis to elucidate vascular pathological mechanisms

Research Project

Project/Area Number 16310138
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionThe University of Tokyo

Principal Investigator

SUZUKI Toru  The University of Tokyo, Fuculty of Medicine Project Research, 医学部附属病院, 科学技術振興特任教員(常勤形態) (90359620)

Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥13,600,000 (Direct Cost: ¥13,600,000)
Fiscal Year 2006: ¥4,000,000 (Direct Cost: ¥4,000,000)
Fiscal Year 2005: ¥4,600,000 (Direct Cost: ¥4,600,000)
Fiscal Year 2004: ¥5,000,000 (Direct Cost: ¥5,000,000)
Keywordscardiovascular / proteomics / transcription factor
Research Abstract

This project was undertaken to elucidate factors important in vascular disease pathophysiology through proteomic methods. Crystal structure analysis was also used to understand the physiochemical basis of the mechanisms of action. These studies were done with the ultimate objective to make possible the development of new therapies and diagnostic methods.
KLF5 is a factor which regulates the cardiovascular remodeling process in response to stress, and is presently considered one of the most important cardiovascular pathological factors. To understand its regulation, interacting proteins were identified by proteomic methods, which included the repressor SET. The functions of SET on KLF5 were analyzed. The crystal structure of SET was also solved which will allow for 'pin-point' drug design.
We also showed that KLF5 is acetylated, and for p300 to be the acetylase while SET inhibits this acetylation. Positive and negative regulation of KLF5 by respective p300 and SET factors was coupled to interaction and acetylation. The deacetylase HDAC1 further negatively regulated KLF5, and to physically compete with p300. KLF5 was also shown to possess anti-apoptotic activity, through analysis of which, we showed that KLF5 interacts with a pro-apoptotic fragment of PARP-1, and for this interaction to also be regulated by acetylation of KLF5.
Through our studies, we have shown how interaction and modifications functionally affect the actions of KLF5, with a particular focus on epigenetic regulation. This better understanding of molecular actions in vascular pathology will allow for development of new therapies.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (30 results)

All 2007 2006 2005 2004 Other

All Journal Article (30 results)

  • [Journal Article] Cardiovascular proteomic analysis.2007

    • Author(s)
      Suzuki T, Nagai R
    • Journal Title

      J Chromatogr B. (In press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Functional interaction between the transcription factor Kruppel-like factor 5 and Poly(ADP-ribose) polymerase-1 in cardiovascular apoptosis.2007

    • Author(s)
      Suzuki et al.
    • Journal Title

      J Biol Chem. (In press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Relationship between the structure of SET/TAF-Ibeta/INHAT and its histone chaperone activity.2007

    • Author(s)
      Muto, Suzuki et al.
    • Journal Title

      Proc. Natl. Acad. Sci. USA. (In press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Functional interaction between the transcription factor Kruppel-like factor 5 and Poly(adp-ribose) polymerase-1 in cardiovascular apoptosis.2007

    • Author(s)
      Suzuki T, Nishi T, Nagino T, Sasaki K, Aizawa K, Kada N, Sawaki D, Munemasa Y, Matsumura T, Muto S, Sata M, Miyagawa K, Horikoshi M, Nagai R.
    • Journal Title

      J. Biol. Chem. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Relationship between the structure of SET/TAF-Ibeta/INHAT and its histone chaperone activity.2007

    • Author(s)
      Muto S, Senda M, Akai Y, Sato L, Suzuki T, Nagai R, Horikoshi M. Senda T.
    • Journal Title

      Proc. Natl. Acad. Sci. USA. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Cardiovascular proteomic analysis.2007

    • Author(s)
      Suzuki T, Nagai R.
    • Journal Title

      J Chromatogr B. (In press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Functional interaction between the transcription factor Kruppel-like factor 5 and Poly(ADP-ribose) polymerase-1 in cardiovascular apoptosis.2007

    • Author(s)
      Suzuki et al.
    • Journal Title

      J. Biol. Chem. (In press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Relationship between the structure of SET/TAF-Iべた・INHAT and its histone chaperone activity.2007

    • Author(s)
      Muto, Suzuki et al.
    • Journal Title

      Proc. Natl. Acad. Sci. USA. (In press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Differential serum proteomic analysis in a model of metabolic disease.2006

    • Author(s)
      Matsumura, Suzuki et al.
    • Journal Title

      Biochem. Biophys. Res. Commun. 351

      Pages: 965-971

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differential serum proteomic analysis in a model of metabolic disease.2006

    • Author(s)
      Matsumura, T., Suzuki, T., Kada, N., Aizawa, K., Munemasa, Y., Nagai, R.
    • Journal Title

      Biochem. Biophys. Res. Commun. 351

      Pages: 965-71

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differential serum proteomic analysis in a model of metabolic disease.2006

    • Author(s)
      Matsumura, Suzuki, et al.
    • Journal Title

      Biochem. Biophys. Res. Commun. 351

      Pages: 965-971

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Vascular Implications of the Kruppel-Like Family of Transcription Factors.2005

    • Author(s)
      Suzuki et al.
    • Journal Title

      Arterioscler. Thromb. Vasc. Biol. 25

      Pages: 1135-1141

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Transcriptional regulation at the chromatin level in the cardiovasculature through protein-protein interactions and chemical modifications.2005

    • Author(s)
      Suzuki et al.
    • Journal Title

      Trends Cardiovasc. Med. 15

      Pages: 125-129

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Deacetylase HDAC1 negatively regulates the cardiovascular transcription factor Kruppel-like factor 5 through direct interaction.2005

    • Author(s)
      Matsumura, Suzuki et al.
    • Journal Title

      J. Biol. Chem. 280

      Pages: 12123-12139

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Significance of the transcription factor KLF5 in cardiovascular remodeling.2005

    • Author(s)
      Nagai, Suzuki et al.
    • Journal Title

      J. Thromb. Haemost. 3

      Pages: 1569-1576

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Transcriptional regulation at the chromatin level in the cardiovasculature through protein-protein interactions and chemical modifications.2005

    • Author(s)
      Suzuki, T., Matsumura, T., Nagai, R.
    • Journal Title

      Trends Cardiovasc. Med. 15

      Pages: 125-129

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Vascular implications of the Kruppel-like family of transcription factors.2005

    • Author(s)
      Suzuki, T., Aizawa, K., Matsumura, T., Nagai, R.
    • Journal Title

      Arterioscler. Thromb. Vasc. Biol. 25

      Pages: 1135-1141

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The deacetylase HDAC1 negatively regulates the cardiovascular transcription factor Kruppel-like factor 5 through direct interaction.2005

    • Author(s)
      Matsumura, T., Suzuki, T., Aizawa, K., Munemasa, Y., Muto, S., Horikoshi, M., Nagai, R.
    • Journal Title

      J. Biol. Chem 280

      Pages: 12123-9

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Significance of the transcription factor KLF5 in cardiovasucular remodeling2005

    • Author(s)
      Nagai, Suzuki et al.
    • Journal Title

      J. Thromb Heamost. 3

      Pages: 70-76

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Deacetylase HDAC1 negatively regulates the cardiovascular transcription factor Kruppel-like factor 5 through direct interaction.2005

    • Author(s)
      Matsumura, Suzuki et al.
    • Journal Title

      J Biol Chem 280

      Pages: 12123-12139

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Vascular Implications of the Kruppel-Like Family of Transcription Factors.2005

    • Author(s)
      Suzuki et al.
    • Journal Title

      Arterioscler Thromb Vasc Biol 25

      Pages: 1135-1141

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Transcriptional Regulation at the Chromatin Level in the Cardiovasculature Through Protein-protein Interactions and Chemical Modifications.2005

    • Author(s)
      Suzuki et al.
    • Journal Title

      Trends Cardiovasc Med 15

      Pages: 125-129

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Deacetylase HDAC1 negatively regulates the cardiovascular transcription factor Kruppel-like factor 5 through direct interaction.2005

    • Author(s)
      Matsumura, Suzuki et al.
    • Journal Title

      J Biol Chem (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Purification, crystallization and preliminary X-ray diffraction analysis of human oncoprotein SET/TAF-1beta.2004

    • Author(s)
      Muto, Suzuki et al.
    • Journal Title

      Acta Crystallogr. D. Biol. Crystallogr. 60

      Pages: 712-714

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Regulation of platelet-derived growth factor-A chain by Kruppel-like factor 5 : new pathway of cooperative activation with nuclear factor-kappaB.2004

    • Author(s)
      Aizawa et al.
    • Journal Title

      J. Biol. Chem. 3

      Pages: 70-76

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Purification, crystallization and preliminary X-ray diffraction analysis of human oncoprotein SET/TAF-lbeta.2004

    • Author(s)
      Muto, S., Senda, M., Adachi, N., Suzuki, T., Nagai, R., Horikoshi, M., Senda, T.
    • Journal Title

      Acta Crystallogr. D. Biol. Crystallogr 60

      Pages: 712-4

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Regulation of platelet-derived growth factor-A chain by Kruppel-like factor 5 : new pathway of cooperative activation with nuclear factor-kappaB.2004

    • Author(s)
      Aizawa, K., Suzuki, T., Kada, N., Ishihara, A., Kawai-Kowase, K., Matsumura, T., Sasaki, K., Munemasa, Y., Manabe, I., Kurabayashi, M., Collins, T., Nagai, R.
    • Journal Title

      J. Biol. Chem 279

      Pages: 70-76

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Regulation of platelet-derived growth factor-A chain by Kruppel-like factor 52004

    • Author(s)
      Aizawa, Suzuki et al.
    • Journal Title

      J Biol Chem 279

      Pages: 70-76

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Purification, crystallization and preliminary X-ray diffraction analysis of human oncoprotein SET/TAF-1β2004

    • Author(s)
      Muto, Suzuki et al.
    • Journal Title

      Acta Crystallogr D Biol Crystallogr 60

      Pages: 712-714

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Cardiovascular proteomic analysis.

    • Author(s)
      Suzuki T, Nagai R.
    • Journal Title

      J Chromatogr B. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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