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A gene-targeting approach for functional characterization of KIAA genes encoding extremely large proteins

Research Project

Project/Area Number 16310141
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionKazusa DNA Research Institute

Principal Investigator

NAKAYAMA Manabu  Kazusa DNA Research Institute, Department of Human Gene Research, Chief Research Scientist, ヒト遺伝子研究部, 主任研究員 (30370927)

Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥11,800,000 (Direct Cost: ¥11,800,000)
Fiscal Year 2005: ¥5,300,000 (Direct Cost: ¥5,300,000)
Fiscal Year 2004: ¥6,500,000 (Direct Cost: ¥6,500,000)
Keywordscomprehensive analysis / functional genomics / large protein / KIAA / KO mice / human genome project / brain specific expression / early development
Research Abstract

To prioritize their functional analysis among thousands of genes in the typical mammalian genome and to decrease the likelihood of producing gene-targeted mice that lack overt phenotypes, we propose that initial analysis focus on genes encoding large proteins. At least some large proteins are likely to serve as frameworks for the intricate assembly of protein complexes ; thus, inactivation of their genes is likely to render definitive, observable phenotypes. Here, we describe the functional characterization of the murine homologues of five human KIAA genes (KIAA1409, KIAA1440, KIAA1447, KIAA1768, KIAA1276) that encode large proteins. Gene-targeted mice showed phenotypic and developmental defects resulting from the functional deletion of three of these five genes. Mice with targeted disruption of KIAA1409 lacked the ability to drink milk and those with targeted disruption of KIAA1447 displayed hind leg motor dysfunction. Disruption of KIAA1440 led to embryonic lethality at the blastocyst stage. The high success rate of our approach demonstrates the rationale for the genome-wide functional examination of large proteins in mice using reverse genetics. Moreover, our approach brings a new perspective to the world of biology : a protein complex can be thought of as being organized hierarchically in terms of function. Some proteins are essential for the proper functioning of and integrity of the complex ; others are relatively less important, taking on modifier roles. We propose that extremely large proteins are the key element of a protein complex because they function as the framework around which the complex is assembled.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (17 results)

All 2006 2005 2004

All Journal Article (17 results)

  • [Journal Article] A gene-targeting approach for functional characterization of KIAA genes encoding extremely large proteins2006

    • Author(s)
      Nakayama, M
    • Journal Title

      FASWB J. In press

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A gene-targeting approach for functional characterization of KIAA genes encoding extremely large proteins2006

    • Author(s)
      Nakayama, M.
    • Journal Title

      FASEB J. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A gene-targeting approach for functional characterization of KIAA genes encoding extremely large proteins2006

    • Author(s)
      Nakayama, M
    • Journal Title

      FASEB J. (In press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Inprovement of recombination efficiency by mutation of red proteins2005

    • Author(s)
      Nakayama, M.
    • Journal Title

      Biotechniques 38

      Pages: 917-924

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Preparation of a set of expression-ready clones of mammalian long cDNAs encoding large proteins by the ORF trap cloning method2005

    • Author(s)
      Nakajima, D.
    • Journal Title

      DNA Research 12

      Pages: 221-233

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Improvement of recombination efficienc by mutation of red proteins2005

    • Author(s)
      Nakayama, M.
    • Journal Title

      Biotechniques Vol38

      Pages: 917-924

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Preparation of a set of expression-ready clones of mammalian long cDNAs encoding large proteinsby the ORF trap cloning method2005

    • Author(s)
      Nakajima, D.
    • Journal Title

      DNA Research Vol12

      Pages: 221-233

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Improvement of recombination efficiency by mutation of red proteins2005

    • Author(s)
      Nakayama, M.
    • Journal Title

      Biotechniques 38

      Pages: 917-924

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Preparation of a set of expression-ready clones of mammalian long cDNAs encoding large proteins by the ORF trap cloning method2005

    • Author(s)
      Nakajima, D.
    • Journal Title

      DNA Res. 12

      Pages: 221-233

    • Related Report
      2005 Annual Research Report
  • [Journal Article] HUGE : a database for human KIAA proteins. a 2004 update integrating HUGEppi and ROUGE2004

    • Author(s)
      R.Kikuno
    • Journal Title

      Nocieic Acids Research 32

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Identification of the genes that are expressed in the upper layers of the neocortex2004

    • Author(s)
      Y.Zhong
    • Journal Title

      Cereb Cortex 14

      Pages: 1144-1152

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary 2004 Annual Research Report
  • [Journal Article] The CAP-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma2004

    • Author(s)
      K.Saito
    • Journal Title

      Structure(Camb) 12

      Pages: 1719-1728

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE2004

    • Author(s)
      R.Kikuno
    • Journal Title

      Nucleic Acids Research Vol32

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Identification of the genes that are expressed in the upper layers of the neocortex2004

    • Author(s)
      Y.Zhong
    • Journal Title

      Cereb Cortex Vol14

      Pages: 1144-1152

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The CAP-Gly domain of CYLD associates withthe proline-rich sequence in NEMO/IKKgamma2004

    • Author(s)
      K.Saito
    • Journal Title

      Structure (Camb) Vol12

      Pages: 1719-1728

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] HUGE : a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE2004

    • Author(s)
      R.Kikuno
    • Journal Title

      Nucleic Acids Research 32

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The Cap-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma2004

    • Author(s)
      K.Saito
    • Journal Title

      Structure(Camb) 12

      Pages: 1719-1728

    • Related Report
      2004 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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