• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Reproduction of the Structure and the Function of Hydrogenase Active Sites

Research Project

Project/Area Number 16350031
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Inorganic chemistry
Research InstitutionNagoya University

Principal Investigator

TATSUMI Kazuyuki  Nagoya University, Research Center for Materials Science, Professor, 物質科学国際研究センター, 教授 (10155096)

Co-Investigator(Kenkyū-buntansha) OHKI Yasuhiro  Nagoya University, Graduate School of Science, Research Assistant, 大学院・理学研究科, 助手 (10324394)
Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥15,800,000 (Direct Cost: ¥15,800,000)
Fiscal Year 2005: ¥8,000,000 (Direct Cost: ¥8,000,000)
Fiscal Year 2004: ¥7,800,000 (Direct Cost: ¥7,800,000)
Keywordshydrogenase / iron / nickel / thiolate / cyanide / carbonyl / activation of hydrogen molecule / dinuclear complex / 水素 / 一酸化炭素 / 多核錯体 / 金属酵素
Research Abstract

Hydrogenase is essential to hydrogen metabolism and represents highly active catalyst for the production and utilization of H_2, hence their active sites are targets for synthetic chemistry. During this research project, we have made substantial progresses in reproduction of the structure and the functions of hydrogenase.
1) Aiming to model the active sites, we have synthesized a tetranuclear Fe-Ni-Ni-Fe complex [(CO)_3Fe(μ-S^tBu)_3NiBr]_2(1)from FeBr_2(CO)_4, NaS^tBu, and NiBr_2(EtOH)_4. The key for successful preparation of the tetranuclear complex is to conduct all procedures at -40℃. Thermal instability of the compound arises from the weak interaction between Fe(II) and CO ligands. Indeed, complex 1 appeared to be relatively stable under CO atmosphere.
2) The tetranuclear complex 1 can be regarded as a dimeric form of dinuclear Fe-Ni complexes weakly bridged by bromides. Simple replacement reactions of bromide with thiolates took place, and a series of dinuclear Fe-Ni complexes were obtained. The dinuclear complexes possess facially arranged three CO lgands on iron, one terminal and two bridging thiolate ligands, and another two sulfur-donors terminally bound to nickel. These Fe-Ni complexes comprise important features of the active site of [NiFe] hydrogenases, and they offer a possibility for reaction chemistry regarding the enzymatic function.
3) The CO-inhibited form of [NiFe] hydrogenase is suggested to bind a CO molecule at the nickel site, whereas CO complexes of Ni(II) and Ni(III) are uncommon. One of the artificial dinuclear Fe-Ni models appeared to react with CO to afford a dinuclear complex with a Ni(II)-bound CO. The reaction was found to be reversible, as demonstrated for the native active site. In order to provide suitable complexes for reaction models, one of the thiolate ligands between Fe and Ni was replaced with chloride.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (38 results)

All 2006 2005 2004

All Journal Article (38 results)

  • [Journal Article] New Nickel(II) Thiolates with A Flexible Cyclo-Ni_<10>S_<20> Framework2006

    • Author(s)
      Zhang Chi, Satoshi Takada, Michael Kolzer, Tsuyoshi Matsumoto, Kazuyuki Tatsumi
    • Journal Title

      Angew. Chem. Int. Ed. 45(in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] New Nickel(II) Thiolates with A Flexible Cyclo-Ni_<10>S_<20> Framework2006

    • Author(s)
      Z.Chi, S.Takada, M.Kolzer, T.Matsumoto, K.Tatsumi
    • Journal Title

      Angew.Chem.Int.Ed. 45(in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A Facile Method for Synthesis of (R)-(-)-and (S)-(+)-Homocitric Acid Lactones and Related α-Hydroxy Dicarboxylic Acids from D- or L-Malic Acid2005

    • Author(s)
      Peng-Fei Xu, Tsuyoshi Matsumoto, Yasuhiro Ohki, Kazuyuki Tatsumi
    • Journal Title

      Tetrahedron Lett 46

      Pages: 3815-3818

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Sulfido-bridged Dinuclear Molybdenum-Copper Complexes Related to the Active Site of CO Dehydrogenase : [(dithiolate)Mo(O)S_2Cu(SAr)]^<2-> (dithiolate=1,2-S_2C_6H_4, 1,2-S_2C_6H_2-3, 6-Cl_2, 1,2-S_2C_2H_4)2005

    • Author(s)
      Motoki Takuma, Yasuhiro Ohki, Kazuyuki Tatsumi
    • Journal Title

      Inorg. Chem. 44

      Pages: 6034-6043

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Dithiolato-Bridged Dinuclear Iron-Nickel Complexes [Fe(CO)_2(CN)_2(μ-SCH_2CH_2CH_2S)Ni(S_2CNR_2)]^- Modeling the Active Site of [NiFe] Hydrogenase2005

    • Author(s)
      Zilong Li, Yasuhiro Ohki, Kazuyuki Tatsumi
    • Journal Title

      J. Am. Chem. Soc. 127

      Pages: 8950-8951

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Molybdenum Carbonyl Complexes with Citrate and its Relevant Carboxylates2005

    • Author(s)
      Motoki Takuma, Yasuhiro Ohki, Kazuyuki Tatsumi
    • Journal Title

      Organometallics 24

      Pages: 1344-1347

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Synthesis of [2Fe-2S] and [4Fe-4S] Clusters Having Terminal Amide Ligands from an Iron(II) Amide Complex2005

    • Author(s)
      Yasuhiro Ohki, Yusuke Sunada, Kazuyuki Tatsumi
    • Journal Title

      Chem. Lett. 34

      Pages: 172-173

    • NAID

      10014363871

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Synthesis of a Vanadium(III) Tris(arylthiolato) Complex and Its Reactions with Azide and Azo Compounds : Formation of a Sulfenamide Complex via Cleavage of an Azo N=N Bond2005

    • Author(s)
      T.Komuro, T.Matsuo, H.Kawaguchi, K.Tatsumi
    • Journal Title

      Inorg. Chem. 44

      Pages: 175-177

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A Facile Method for Synthesis of (R)-(-)-and (S)-(+)-Homocitric Acid Lactones and Related α-Hydroxy Dicarboxylic Acids from D- or L-Malic Acid2005

    • Author(s)
      P.-F.Xu, T.Matsumoto, Y.Ohki, K.Tatsumi
    • Journal Title

      Tetrahedron Lett. 46

      Pages: 3815-3818

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Sulfido-bridged Dinuclear Molybdenum-Copper Complexes Related to the Active Site of CO Dehydrogenase : [(dithiolate)Mo(O)S_2Cu(SAr)]^<2-> (dithiolate=1,2-S_2C_6H_4, 1,2-S_2C_6H_2-3,6-Cl_2, 1,2-S_2C_2H_4)2005

    • Author(s)
      M.Takuma, Y.Ohki, K.Tatsumi
    • Journal Title

      Inorg.Chem. 44

      Pages: 6034-6043

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Dithiolato-Bridged Dinuclear Iron-Nickel Complexes [Fe(CO)_2(CN)_2(μ-SCH_2CH_2CH_2S)Ni(S_2CNR_2)]^- Modeling the Active Site of [NiFe] Hydrogenase2005

    • Author(s)
      Z.Li, Y.Ohki, K.Tatsumi
    • Journal Title

      J.Am.Chem.Soc. 127

      Pages: 8950-8951

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Molybdenum Carbonyl Complexes with Citrate and its Relevant Carboxylates2005

    • Author(s)
      M.Takuma, Y.Ohki, K.Tatsumi
    • Journal Title

      Organometallics 24

      Pages: 1344-1347

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Synthesis of [2Fe-2S] and [4Fe-4S] Clusters Having Terminal Amide Ligands from an Iron(II) Amide Complex2005

    • Author(s)
      Y.Ohki, Y.Sunada, K.Tatsumi
    • Journal Title

      Chem.Lett. 34

      Pages: 172-173

    • NAID

      10014363871

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Synthesis of a Vanadium(III) Tris(arylthiolato) Complex and Its Reactions with Azide and Azo Compounds : Formation of a Sulfenamide Complex via Cleavage of an Azo N=N Bond2005

    • Author(s)
      T.Komuro, T.Matsuo, H.Kawaguchi, K.Tatsumi
    • Journal Title

      Inorg.Chem. 44

      Pages: 175-177

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Synthesis of [2Fe-2S] and [4Fe-4S] Clusters Having Terminal Amide Ligands from an Iron(II) Amide Complex2005

    • Author(s)
      Ohki, Y., Sunada, Y., Tatsumi, K
    • Journal Title

      Chem.Lett. 34

      Pages: 172-173

    • NAID

      10014363871

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Molybdenum Carbonyl Complexes with Citrate and its Relevant Carboxylates2005

    • Author(s)
      Takuma, M., Ohki, Y., Tatsumi, K
    • Journal Title

      Organometallic. 24

      Pages: 1344-1347

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A Facile Method for Synthesis of (R)-(-)-and (S)-(+)-Homocitric Acid Lactones and Related α-Hydroxy Dicarboxylic Acids from D- or L-Malic Acid2005

    • Author(s)
      Xu, P.-F., Matsumoto, T., Ohki, Y., Tatsumi, K
    • Journal Title

      Tetrahedron Lett. 46

      Pages: 3815-3818

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Dithiolato-Bridged Dinuclear Iron-Nickel Complexes [Fe(CO)_2(CN)_2(μ-SCH_2CH_2CH_2S)Ni(S_2CNR_2)]^- Modeling the Active Site of [NiFe] Hydrogenase2005

    • Author(s)
      Li, Z., Ohki, Y., Tatsumi, K
    • Journal Title

      J.Am.Chem.Soc. 127

      Pages: 8950-8951

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Sulfido-bridged Dinuclear Molybdenum-Copper Complexes Related to the Active Site of CO Dehydrogenase : [(dithiolate)Mo(O)S_2Cu(SAr)]^<2-> (dithiolate = 1,2-S_2C_6H_4, 1,2-S_2C_6H_2-3,6-Cl_2, 1,2-S_2C_2H_4)2005

    • Author(s)
      Takuma, M., Ohki, Y., Tatsumi, K
    • Journal Title

      Inorg.Chem. 44

      Pages: 6034-6043

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Synthesis of a Vanadium(III) Tris(arylthiolato) Complex and Its Reactions with Azide and Azo Compounds : Formation of a Sulfenamide Complex via Cleavage of an Azo N=N Bond2005

    • Author(s)
      Komuro, T., Matsuo, T., Kawaguchi, H., Tatsumi, K
    • Journal Title

      Inorg.Chem. 44

      Pages: 175-177

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Synthesis of [2Fe-2S] and [4Fe-4S] Clusters Having Terminal Amide Ligands from an Fe(II) Amide Complex2005

    • Author(s)
      Y.Ohki, Y.Sunada, K.Tatsumi
    • Journal Title

      Chem.Lett. 34

      Pages: 172-173

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Synthesis and Structural Characterization of Silanethiolato Complexes Having tert-Butyldimethylsilyl and Trimethylsilyl Groups2004

    • Author(s)
      T.Komuro, T.Matsuo, H.Kawaguchi, K.Tatsumi
    • Journal Title

      Dalton Trans

      Pages: 1618-1625

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Elimination-Addition Mechanism for Nucleophilic Substitution Reaction of Cyclohexenyl Iodonium Salts and Regioselectivity of Nucleophilic Addition to the Cyclohexyne Intermediate2004

    • Author(s)
      M.Fujita, W.-H.Kim, Y.Sakanishi, K.Fujiwara, S.Hirayama, T.Okuyama, Y.Ohki, K.Tatsumi, Y.Yoshikawa
    • Journal Title

      J. Am. Chem. Soc. 126

      Pages: 4548-4558

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Homo- and Heteronuclear Complexes of (Pentamethylcyclopentadienyl)rhodium(III) Bearing [Bis(diphenylphosphanylmethyl)]phenylphosphate.2004

    • Author(s)
      Y.Yamamoto, Y.Kohsaka, Y.Shinozaki, Y.Tsutsumi, Y.Kaburagi, K.Kuge, Y.Sunada, K.Tatsumi
    • Journal Title

      Eur. J. Inorg. Chem

      Pages: 134-142

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Homo- and Heteronuclear Complexes Based on Arene Ruthenium Complexes Bearing Bis(diphenylphosphinomethyl)phenylphosphine (dpmp).2004

    • Author(s)
      Y.Yamamoto, Y.Sinozuka, Y.Tsutsumi, K.Fuse, K.Kuge, Y.Sunada, K.Tatsumi
    • Journal Title

      Inorg. Chem. Acta 357

      Pages: 1270-1282

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Quasi-Octahedral Complexes of Pentamethylcyclopentadienyl Iridium(III) Bearing Bis(diphenylphosphinomethyl)phenylphosphine (dpmp).2004

    • Author(s)
      Y.Yamamoto, Y.Kohsaka, Y.Shinozaki, Y.Tsutsumi, Y.Kaburagi, K.Kuge, Y.Sunada, K.Tatsumi
    • Journal Title

      Dalton Trans

      Pages: 2969-2978

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A Coordinatively Unsaturated 2,6-Dimesitylphenyl Thiolate Complex of Half-Sandwich Ruthenium(II).2004

    • Author(s)
      Y.Ohki, H.Sadohara, Y.Takikawa, K.Tatsumi
    • Journal Title

      Angew. Chem. Int. Ed. 43

      Pages: 2290-2293

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Homo- and Heteronuclear Complexes of (Pentamethylcyclopentadienyl)rhodium(III) Bearing [Bis(diphenylphosphanylmethyl)]phenylphosphate.2004

    • Author(s)
      Y.Yamamoto, Y.Kohsaka, Y.Shinozaki, Y Tsutsumi, Y.Kaburagi, K.Kuge, Y.Sunada, K.Tatsumi
    • Journal Title

      Eur.J.Inorg.Chem.

      Pages: 134-142

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Homo- and Heteronuclear Complexes Based on Arene Ruthenim Complexes Bearing Bis(diphenylphosphinomethyl)phenylphosphine (dpmp).2004

    • Author(s)
      Y.Yamamoto, Y.Sinozuka, Y.Tsutsumi, K.Fuse, K.Kuge, Y.Sunada, K.Tatsumi
    • Journal Title

      Inorg.Chim.Acta 357

      Pages: 1270-1282

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Quasi-Octahedral Complexes of Pentamethylcyclopentadienyl Iridium(III) Bearing Bis(diphenylphosphinomethyl)phenylphosphine (dpmp).2004

    • Author(s)
      Y.Yamamoto, Y.Kosaka, Y.Tsutsumi, Y.Sunada, K.Tatsumi, F.Takei, S.Takahashi
    • Journal Title

      Dalton Trans.

      Pages: 2969-2978

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A Coordinatively Unsaturated 2,6-Dimesitylphenyl Thiolate Complex of Half-Sandwich Ruthenium(II).2004

    • Author(s)
      Y.Ohki, H.Sadohara, Y.Takikawa, K.Tatsumi
    • Journal Title

      Angew.Chem.Int.Ed. 43

      Pages: 2290-2293

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Synthesis and Structural Characterization of Silanethiolato Complexes Having tert-Butyldimethylsilyl and Trimethylsilyl Groups2004

    • Author(s)
      T.Komuro, T.Matsuo, H.Kawaguchi, K.Tatsumi
    • Journal Title

      Dalton Trans.

      Pages: 1618-1625

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Elimination-Addition Mechanism for Nucleophilic Substitution Reaction of Cyclohexenyl Iodonium Salts and Regioselectivity of Nucleophilic Addition to the Cyclohexyne Intermediate2004

    • Author(s)
      M.Fujita W.-H.Kim, Y.Sakanishi, K Fujiwara, S.Hirayama, T.Okuyama, Y.Ohki, K.Tatsumi, Y.Yoshikawa
    • Journal Title

      J.Am.Chem.Soc. 126

      Pages: 7548-7558

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Homo- and Heteronuclear Complexes of (Pentamethylcyclopentadienyl)rhodium)III) Bearing [Bis(diphenylphosphanylmethyl)]phenylphosphate2004

    • Author(s)
      Y.Sunada, K.Tatsumi 他
    • Journal Title

      Eur.J.Inorg.Chem.

      Pages: 134-142

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A Coordinatively Unsaturated 2,6-Dimesitylphenyl Thiolate Complex of Half-Sandwich Ruthenium(II)2004

    • Author(s)
      Y.Ohki, K.Tatsumi 他
    • Journal Title

      Angew.Chem.Int.Ed. 43

      Pages: 2290-2293

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Synthesis and Structural Characterization of Silanethiolato Complexes Having tert- Butyldimethylsilyl and Trimethylsilyl Groups2004

    • Author(s)
      T.Komuro, T.Matsuo, H.Kawaguchi, K.Tatsumi
    • Journal Title

      J.Chem.Soc.,Dalton

      Pages: 1618-1625

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Reactions of Rhodium(III) and Iridium(III) Complexes Bearing a P, O-Coordination with Tetracyanoethylene in Presence of KPF_62004

    • Author(s)
      Y.Sunada, K.Tatsumi 他
    • Journal Title

      Inorg.Chim.Acta 357

      Pages: 2833-2840

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Elimination-Addition Mechanism for Nucleophilic Substitution Reaction of Cyclohexenyl Iodonium Salts and Regioselectivity of Nucleophilic Addition to the Cyclohexyne Intermediate2004

    • Author(s)
      T.Okuyama, Y.Ohki, K.Tatsumi 他
    • Journal Title

      J.Am.Chem Soc. 126

      Pages: 7548-7558

    • Related Report
      2004 Annual Research Report

URL: 

Published: 2004-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi