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Manipulation of Genes in the Cell Using Glycoviruses and Signal-Amplifying Probes

Research Project

Project/Area Number 16350087
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionKyoto University

Principal Investigator

AOYAMA Yasuhiro  Kyoto University, Graduate School of Engineering, Professor, 工学研究科, 教授 (00038093)

Co-Investigator(Kenkyū-buntansha) SANDO Shinsuke  Kyoto University, Graduate School of Engineering, Research Associate, 工学研究科, 助手 (20346084)
Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥15,200,000 (Direct Cost: ¥15,200,000)
Fiscal Year 2005: ¥7,800,000 (Direct Cost: ¥7,800,000)
Fiscal Year 2004: ¥7,400,000 (Direct Cost: ¥7,400,000)
Keywordsglycovirus / cerasome / riboregulator / gene delivery / gene sensing / molecular beacon / read-through / sense codon / リポレギュレータ / siRNA / シグナル増幅 / DNA / RNA / リポソーム / 遺伝子診断 / 量子ドット / 肝細胞 / 制癌剤 / イバンドロネート
Research Abstract

1.Gene Delivery Using Glycoviruses
The viral size of 〜50nm was found to be best for cellular uptake. We found glycoviruses having three galactose moieties fulfill this requirement.
2.Gene Delivery Using Cerasomes.
Cerasomes (ceramic-coated liposomes) turned out to be free from fusion when binding to DNA and can thus be used as an excellent, viral size-keeping gene carrier.
3.Gene Sensing using Riboregulator
Molecular beacon-type riboregulator probes express particular reporter protein in the presence of a particular gene as a target and can thus be used as a signal-amplifying gene sensor.
4.Genotype-Phenotype Coupling
We devised a read-through ribosome-display strategy, thereby tagging the expressed protein with the mRNA that codes the former.
5.Sense Codon Suppression with Nonnatural Amino Acids
We found a simple method to introduce a nonnatural amino acid into sense codon using an inhibitor of the aminoacyl-tRNA synthetase.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (33 results)

All 2006 2005 2004 Other

All Journal Article (28 results) Book (1 results) Patent(Industrial Property Rights) (4 results)

  • [Journal Article] Visible Sensing of Nucleic Acid Sequences with a Genetically Encodable Unmodified RNA Probe2006

    • Author(s)
      A.Narita, K.Ogawa, S.Sando, Y.Aoyama
    • Journal Title

      Angew. Chem. Int. Ed. 45

      Pages: 2879-2883

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Cerasome as an Infusible, Cell-Friendly, and Serum-Compatible Transfection Agent in a Viral Size2006

    • Author(s)
      K.Matsui, S.Sando, T.Sera, Y.Aoyama, Y.Sasaki, T.Komatsu, T.Terashima, J.Kikuchi
    • Journal Title

      J.Am.Chem.Soc. 128

      Pages: 3114-3115

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Termination-Free Prokaryotic Protein Translation by Using Anticodon-Adjusted E. coli tRNASer as Unified Suppressors of the UAA/UGAUAG Stop Codons. Read-Through Ribosome Display of Full-Length DHFR with Translated UTR as a Buried Spacer Arm2006

    • Author(s)
      A.Ogawa, S.Sando, Y.Aoyama
    • Journal Title

      Chem Bio Chem 7

      Pages: 249-252

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] RNAi Silencing of Exogenous and Endogenous Reporter Genes Using a Macrocyclic Octaamine as a Compact" siRNA Carrier. Studies on the Nonsilenced Residual Activity2006

    • Author(s)
      K.Matsui, S.Horiuchi, S.Sando, T.Sera, Y.Aoyama
    • Journal Title

      Bioconjugate Chem. 17

      Pages: 132-138

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Visible Sensing of Nucleic Acid Sequences with a Genetically Encodable Unmodified RNA Probe2006

    • Author(s)
      A.Narita, K.Ogawa, S.Sando, Y.Aoyama
    • Journal Title

      Angew.Chem.Int.Ed. 45

      Pages: 2879-2883

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Termination-Free Prokaryotic Protein Translation by Using Anticodon-Adjusted E.coli tRNASer as Unified Suppressors of the UAA/UGAUAG Stop Codons. Read-Through Ribosome Display of Full-Length DHFR with Translated UTR as a Buried Spacer Arm2006

    • Author(s)
      A.Ogawa, S.Sando, Y.Aoyama
    • Journal Title

      ChemBioChem 7

      Pages: 249-252

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] RNAi Silencing of Exogenous and Endogenous Reportyer Genes Using a Macrocyclic Octaamine as a"Compact"siRNA Carrier. Studies on the Nonsilenced Residual Activity2006

    • Author(s)
      K.Matsui, S.Horiuchi, S.Sando, T.Sera, Y.Aoyama
    • Journal Title

      Bioconjugate Chem. 17・1

      Pages: 132-138

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Cerasome as an Infusible, Cell-Friendly, and Serum-Compatible Transfection Agent in a Viral Size2006

    • Author(s)
      K.Matsui, S.Sando, T.Sera, Y.Aoyama, Y.Sasaki, T.Komastu, T.Terashima, J.Kikuchi
    • Journal Title

      J.Am.Chem.Soc. 128・10

      Pages: 3114-3115

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A Small-Molecule-Based Approach to Snse Codon-Templated Natural-Unnatural Hybrid Peptides. Slective Silencing and Reassignment of the Sense Codon by Orthogonal Reacylation Stalling at the Single-Codon Level2005

    • Author(s)
      S.Sando, K.Kanatani, N.Sato, H.Matsumoto, T.Hohsaka, Y.Aoyama
    • Journal Title

      J. Am. Chem. Soc. 127

      Pages: 7998-7999

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Doubly Catalytic Sensing of HIV-1-Related CCR5 Sequence in Prokaryotic Cell-Free Translation System Using Riboregulator-Controlled Luciferase Activity2005

    • Author(s)
      S.Sando, A.Narita, K.Abe, Y.Aoyama
    • Journal Title

      J. Am. Chem. Soc. 127

      Pages: 5300-5301

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Locked TASC Probes for Homogeneous Sensing of Nucleic Acids and Imaging of Fixed E-coli Cells2005

    • Author(s)
      S.Sando, A.Narita, T.Sasaki, Y.Aoyama
    • Journal Title

      Org. Biomolec. Chem. 3

      Pages: 1002-1007

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A Simple Approach to Sense Codon-Tmplated Synthesis of Natural/Unnatural Hybrid Peptides2005

    • Author(s)
      K.Kanatani, S.Sando, Y.Aoyama
    • Journal Title

      Nucleic Acids Symp. Seties 49

      Pages: 265-266

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] In Vitro Selection of RNA Aptamers for the Escherichia coli Release Factor 12005

    • Author(s)
      A.Ogawa, T.Nishi, S.Sando, Y.Aoyama
    • Journal Title

      Nucleic Acids Symp. Seties 49

      Pages: 269-270

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Highly Sensitive Genotyping Using Artificial Riboregulator System2005

    • Author(s)
      A.Narita, K.Ogawa, S.Sando, Y.Aoyama
    • Journal Title

      Nucleic Acids Symp. Seties 49

      Pages: 271-272

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A Small-Molecule-Based Approach to Snse Codon-Templated Natural-Unnatural Hybrid Peptides. Slective Silencing and Reassignment of the Sense Codon by Orthogonal Reacylation Stalling at the Single-Codon Level2005

    • Author(s)
      S.Sando, K.Kanatani, N.Sato, H.Matsumoto, T.Hohsaka, Y.Aoyama
    • Journal Title

      J.Am.Chem.Soc. 127

      Pages: 7998-7999

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Doubly Catalytic Sensing of HIV-1-Related CCR5 Sequence in Prokaryotic Cell-Free Translation System Using Riboregulator-Controlled Luciferase Activity2005

    • Author(s)
      S.Sando, A.Narita, K.Abe, Y.Aoyama
    • Journal Title

      J.Am.Chem.Soc. 127

      Pages: 5300-5301

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Locked TASC Probes for Homogeneous Sensing of Nucleic Acids and Imaging of Fixed E-coli Cells2005

    • Author(s)
      S.Sando, A.Narita, T.Sasaki, Y.Aoyama
    • Journal Title

      Org.Biomolec.Chem. 3

      Pages: 1002-1007

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A Simple Approach to Sense Codon-Tmplated Synthesis of Natural/Unnatural Hybrid Peptides2005

    • Author(s)
      K.Kanatani, S.Sando, Y.Aoyama
    • Journal Title

      Nucleic Acids Symp.Seties 49

      Pages: 265-266

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] In Vitro Selection of RNA Aptamers for the Escherichia coli Release Factor 12005

    • Author(s)
      A.Ogawa, T.Nishi, S.Sando, Y.Aoyama
    • Journal Title

      Nucleic Acids Symp.Seties 49

      Pages: 269-270

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Highly Sensitive Genotyping Using Artificial Riboregulator System2005

    • Author(s)
      A.Narita, K.Ogawa, S.Sando, Y.Aoyama
    • Journal Title

      Nucleic Acids Symp.Seties 49

      Pages: 271-272

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Locked TASC Probes for Homogeneous Sensing of Nucleic Acids and Imaging of Fixed E-coli Cells2005

    • Author(s)
      S.Sando, A.Narita, T.Sasski, Y.Aoyama
    • Journal Title

      Org.Biomolec.Chem. 3・6

      Pages: 1002-1007

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Doubly catalytic sensing of HIV-1-Related CCR5 sequence in prokaryotic cell-free translation system using riboregulator-controlled luciferase activity2005

    • Author(s)
      S.Sando, A.Narita, K.Abe, Y.Aoyama
    • Journal Title

      J.Am.Chem.Soc. 127・15

      Pages: 5300-5301

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A Small-Molecule Based Approach to Sense-Codon Templated Natural/Unnatural Peptides. Selective Silencing and Reassignment of Sense-Codon by Orthgonal Reacylation Stalling at a Single-Codon Level2005

    • Author(s)
      S.Sando, K.Kanatani, N.Sato, H.Matsumoto, T.Hohsaka, Y.Aoyama
    • Journal Title

      J.Am.Chem.Soc. 127(in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Doubly Catalytic Sensing of HIV-1 Related CCRS Sequence in Prokaryotic Cell-Free Translation System Using Riboregulator-Controlled Luciferase Activity2005

    • Author(s)
      S.Sando, A.Narita, K.Abe, Y.Aoyama
    • Journal Title

      J.Am.Chem.Soc. 127(in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Locked TASC probes for homogeneous sensing of nucleic acids with improved accuracy2005

    • Author(s)
      S.Sando, A.Narita, T.Sasaki, Y.Aoyama
    • Journal Title

      Org.Biomol.Chem. 3

      Pages: 1002-1007

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A quantum dot conjugated sugar ball and its cellular uptake. On the size effects of endocytosis in the subviral region2004

    • Author(s)
      F.Osaki, T.Kanamori, S.Sando, T.Sera, Y.Aoyama
    • Journal Title

      J.Am.Chem.Soc. 126

      Pages: 6520-6521

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Aptamer selection for the inhibition of cell adhesion with fibronectin as target2004

    • Author(s)
      T.Ogawa, N.Tomita, N.Kikuchi, S.Sando, Y.Aoyama
    • Journal Title

      Bioorg.Med.Chem.Lett. 4

      Pages: 4001-4004

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Macrocyclic glycocluster : from amphiphile through nanoparticle to glycovirus2004

    • Author(s)
      Y.Aoyama
    • Journal Title

      Chem.Eur.J. 10

      Pages: 588-593

    • Related Report
      2004 Annual Research Report
  • [Book] Glycovirus2005

    • Author(s)
      Y.Aoyama
    • Publisher
      にほん糖質学会(in press)
    • Related Report
      2004 Annual Research Report
  • [Patent(Industrial Property Rights)] 核酸プローブ、核酸チップ、標的核酸検出方法、薬剤スクリーニング方法、標的核酸検出装署及び遺伝子診断方法2004

    • Inventor(s)
      青山安宏, 山東信介, 佐々木要徳, 成田敦
    • Industrial Property Rights Holder
      京都大学
    • Filing Date
      2004-09-21
    • Related Report
      2004 Annual Research Report
  • [Patent(Industrial Property Rights)] タンパク質の表示方法

    • Inventor(s)
      青山安宏, 山東信介, 小川敦司
    • Industrial Property Number
      2005-145194
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 非天然アミノ酸含有及び/又はヒドロキシ酸含有有機化合物の製造方法(センスコドンへの非天然アミノ酸の導

    • Inventor(s)
      青山安宏, 山東信介, 金谷啓一郎
    • Industrial Property Number
      2005-065315
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 遺伝子検出試薬及びその利用法(リボレギュレーターを用いた遺伝子診断法)

    • Inventor(s)
      青山安宏, 山東信介, 成田敦
    • Industrial Property Number
      2005-043104
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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