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Molecular Ecological Studies on Coevolution of Sulfur Cycle System and Microbial Community in Aquatic Ecosysytems

Research Project

Project/Area Number 16370014
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Ecology/Environment
Research InstitutionHokkaido University

Principal Investigator

FUKUI Manabu  Hokkaido University, Institute of Low Temperature Science, Professor (60305414)

Co-Investigator(Kenkyū-buntansha) KOJIMA Hisaya  Hokkaido University, Institute of Low Temperature Science, Assi. Prof. (70400009)
Project Period (FY) 2004 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥16,190,000 (Direct Cost: ¥15,500,000、Indirect Cost: ¥690,000)
Fiscal Year 2007: ¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2006: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 2005: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 2004: ¥7,200,000 (Direct Cost: ¥7,200,000)
KeywordsSulfur / Phylogenetic evolution / Molecular evolution / Thermophile / Microorganism / Sulfate reduction / Sulfur oxidation / Functional gene
Research Abstract

Microbial sulfate reduction is recorded in 〜3.47-Gyr-old barites from North Pole, Australia (Shen et al., 2001: Nature 401, 77-81), indicating that emergence of sulfate-reducing bacteria was earlier than we thought. However, it is unclear how various types of sulfur cycle and sulfur-metabolizing microorganism co-evolve in the present aquatic ecosystems. Aims of this study was first to compare phylogenetic relationship among sulfur-metabolizing microorganisms inhabiting high-temperature terrestrial hot springs, a moderate-temperature meromictic saline lake and a moderate-temperature freshwater oligotrophic lake, second to infer the origin of microbial sulfur cycle, and finally to understand the successive development of the sulfur cycle systems throughout Earth history. By phylogenetic and functional gene analysis, two dominant members were observed in the microbial dens mat at 70 to 80℃ of hot springs; thermophilic sulfate-reducing Thermodesulfobacteria and thermophilic sulfur-oxidizing Sulfurihydrogenibium. Both members are phylogenetically near to the origin of life. Tracer and incubation experiments using the mat showed that both members contributed to the internal sulfur cycle. These results suggest that the microbial sulfur cycle in the hot spring at 70 to 80℃ is one of ancient types. On the other hand, sulfur-metabolizing bacteria from a moderate-temperature saline and a freshwater lake are phylogenetically affiliated to proteobacteria and more diverse than those from high-temperature terrestrial hot springs. The sulfur cycle and metabolic pathways were complicated as compared to the hot springs. Thus, the process of global temperature decrease on Earth seems to be a key factor for diverse sulfur cycle and the microbial community in aquatic ecosystems.

Report

(5 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (52 results)

All 2008 2007 2006 2005 2004 Other

All Journal Article (26 results) (of which Peer Reviewed: 10 results) Presentation (20 results) Book (6 results)

  • [Journal Article] naerobic degradatoin of p-xylene in sediment-free sulfate-reducing enrichment culture2008

    • Author(s)
      Nakagawa, T. , et. al.
    • Journal Title

      Biodegradation 印刷中

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Carbon source utilization and accumulation of respiration-related substances by freshwater Thioploca species.2007

    • Author(s)
      Kojima, H. , et. al.
    • Journal Title

      Microbial Ecology 59

      Pages: 23-31

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Carbon source utilization and accumulation of respiration-related substances by freshwater Thioploca species.2007

    • Author(s)
      Hisaya Kojima, Takuo Nakajima, and Manabu Fukui.
    • Journal Title

      FEMS Microbiology Ecology 59

      Pages: 23-31

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Carbon Source Utilization and Accumulation of Respiration-Related Substances by Freshwater Thioploca species.2007

    • Author(s)
      Kojima, H., T.Nakajima, M.Fukui
    • Journal Title

      FEMS Microbiology Ecology 59

      Pages: 23-31

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Community structure of bacteria associated with sheaths of freshwater and brackish Thioploca species.2006

    • Author(s)
      Kojima, H. , et. al.
    • Journal Title

      Microbial Ecology 52

      Pages: 23-31

    • NAID

      120000973275

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Rapid PCR-based method for detection and differentiation of Didymiaceae and Physaraceae (myxomycetes) in environmental samples.2006

    • Author(s)
      Kamono, A. and Fukui, M.
    • Journal Title

      Journal of Microbiological Methods 67

      Pages: 496-506

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Community Structure of Bacteria Associated with Sheaths of Freshwater and Brackish Thioploca species.2006

    • Author(s)
      Hisaya Kojima, Yoshikazu Koizumi, and Manabu Fukui.
    • Journal Title

      Microbial Ecology 52

      Pages: 756-773

    • NAID

      120000973275

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Rapid PCR-based method for detection and differentiation of Didymiaceae and Physaraceae (myxomycetes) in environmental samples.2006

    • Author(s)
      Akiko Kamono and Manabu Fukui.
    • Journal Title

      J. Microbiological Method 67

      Pages: 496-506

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Community Structure of Bacteria Associated with Sheaths of Freshwater and Brackish Thioploca species.2006

    • Author(s)
      Kojima, H., Y.Koizumi, M.Fukui
    • Journal Title

      Microbial Ecology 52

      Pages: 756-773

    • NAID

      120000973275

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Potential sulfur metabolisms and associated bacteria within anoxic surface sediment from saline meromictic Lake Kaiike (Japan)2005

    • Author(s)
      Koizumi, Y. , et. al.
    • Journal Title

      FEMS Microbiolog Ecology 52

      Pages: 297-305

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Depth-related change in archaeal community structure in a freshwater lake sediment as determined by DGGE analysis of amplified 16S rRNA genes and reversely transcribed rRNA fragments.2005

    • Author(s)
      Yoshikazu Koizumi, Susumu Takii and Manabu Fukui..
    • Journal Title

      FEMS Microbiology Ecology 48

      Pages: 285-292

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Potential sulfur metabolisms and associated bacteria within anoxic surface sediment from saline meromictic Lake Kaiike (Japan).2005

    • Author(s)
      Yoshikazu Koizumi, Hisaya Kojima, and Manabu Fukui.
    • Journal Title

      FEMS Microbiology Ecology 52

      Pages: 297-305

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Analysis of dissimilatory sulfite reductase and 16S rRNA gene fragments from deep-sea hydrothermal site of the Suiyo Seamount,Izu-Bonin Arc2004

    • Author(s)
      Nakagawa, T. , et. al.
    • Journal Title

      Applied and Environmetal Microbiology 70

      Pages: 393-403

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Vertical and temporal shifts of microbial communities in the water column and sediment of saline meromictic Lake Kaiike.2004

    • Author(s)
      Koizumi, Y. , et. al.
    • Journal Title

      Environmental Microbiology 4

      Pages: 285-292

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] 水曜海山における特異な微生物現象2004

    • Author(s)
      丸山明彦・砂村倫成・福井 学・久留主泰朗
    • Journal Title

      海の研究 14

      Pages: 309-318

    • NAID

      130004387698

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Dominant microbial composition and its vertical distribution in saline meromictic Lake Kaiike (Japan)2004

    • Author(s)
      Koizumi, Y. , et. al.
    • Journal Title

      Applied and Environmetal Microbiology 70

      Pages: 4930-4940

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Depth-related change in archaeal community structure in a freshwater lake sediment as determined by DGGE analysis of amplified 16S rRNA.2004

    • Author(s)
      Koizumi, Y. , et. al.
    • Journal Title

      FEMS Microbiolog Ecology 52

      Pages: 285-292

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Analysis of dissimilatory sulfite reductase and 16S rRNA gene fragment from deep-sea hydrothermal sites of the Suiyo Seamount, Izu-Bonin Arc, Western Pacific.2004

    • Author(s)
      Tatsunori Nakagawa, Jun-ichiro Ishibashi, Akihiko Maruyama, Toshiro Yamanaka, Yusuke Morimoto, Hiroyuki Kimura, Tetsuro Urabe and Manabu Fukui.
    • Journal Title

      Applied and Environmental Microbiology 70

      Pages: 393-403

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Dominant microbial composition and its vertical distribution in saline meromictic Lake Kaiike (Japan), as revealed by quantitative oligonucleotide probe membrane hybridization.2004

    • Author(s)
      Yoshikazu Koizumi, Hisaya Kojima, and Manabu Fukui.
    • Journal Title

      Applied and Environmental Microbiology 70

      Pages: 4930-4940

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Vertical and temporal shifts of microbial communities in the water column and sediment of saline meromictic Lake Kaiike (Japan), as determined by a 16S rDNA-based analysis, and related to physicochemical gradients..2004

    • Author(s)
      Yoshikazu Koizumi, Hisaya Kojima, Kazumasa Oguri, Hiroshi Kitazato, and Manabu Fukui.
    • Journal Title

      Environmental Microbiology 4

      Pages: 622-637

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Analysis of dissimilatory sulfite reductase and 16S rRNA gene fragment from deep-sea hydrothermal sites of the Suiyo Seamount, Izu-Bonin Arc, Western Pacific.2004

    • Author(s)
      Nakagawa, Ishibashi, Maruyama, Yamanaka, Morimoto, Kimura, Urabe, Fukui
    • Journal Title

      Applied and Environmental Microbiology 70

      Pages: 393-403

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Depth-related change in archaeal community structure in a freshwater lake sediment as determined with denaturing gradient gel electrophoresis of amplified 16S rRNA genes2004

    • Author(s)
      Koizumi, Takii, Fukui
    • Journal Title

      FEMS Microbiology Ecology 48

      Pages: 285-292

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Vertical and temporal shifts in microbial communities in the water column and sediment of saline meromictic Lake Kaiike (Japan)2004

    • Author(s)
      Koizumi, Kojima, Oguri, Kitazato, Fukui
    • Journal Title

      Environmental Microbiology 4

      Pages: 622-637

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Dominant microbial composition and its vertical distribution in saline meromictic Lake Kaiike (Japan), as revealed by quantitative oligonucleotide probe membrane hybridization2004

    • Author(s)
      Koizumi, Kojima, Fukui
    • Journal Title

      Applied and Environmental Microbiology 70

      Pages: 4930-4940

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Potential sulfur metabolisms and associated bacteria within anoxic surface sedimet from saline meromictic Lake Kaiike (Japan)2004

    • Author(s)
      Koizumi, Kojima, Fukui
    • Journal Title

      FEMS Microbiology Ecology (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Anaerobic degradatoin of p-xylene in sediment-free sulfate-reducinh enrichment culture.

    • Author(s)
      Tatsunori Nakagawa, Shinya Sato and Manabu Fukui.
    • Journal Title

      Biodegradation (In press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 高山帯湖沼生態系のバクテリア群集構造2008

    • Author(s)
      小島久弥
    • Organizer
      日本生態学会
    • Place of Presentation
      九州大学(福岡)
    • Year and Date
      2008-03-16
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 南極ラングホブデの氷雪藻ブルームにおける微生物群集構造2007

    • Author(s)
      藤井正典
    • Organizer
      第30回極域生物シンポジウム
    • Place of Presentation
      極地研(東京)
    • Year and Date
      2007-11-16
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Community structure of microorganisms in the snow algal blooms of Langhovde, Antarctica.2007

    • Author(s)
      Fujii, M.
    • Organizer
      第23回日本微生物生態学会
    • Place of Presentation
      愛媛大学(松山)
    • Year and Date
      2007-09-18
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Community structure of microorganisms in the snow algal blooms of Langhovde, Antarctica.2007

    • Author(s)
      Masanori Fujii, Hisaya Kojima, Ryoichi Tanaka, Yoshinori Takano, Tamotsu Hoshino, Satoshi Imura and Manabu Fukui.
    • Organizer
      23^<rd> Annual Meeting of Japanese Microbial Ecology
    • Place of Presentation
      Matsuyama, Japan
    • Year and Date
      2007-09-18
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Effects of temperature on sulfate-reducing consortia which degrade petroleum hydrocarbon2007

    • Author(s)
      Higashioka, Y.
    • Organizer
      第23回日本微生物生態学会
    • Place of Presentation
      愛媛大学(松山)
    • Year and Date
      2007-09-17
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Effects of temperature on sulfate-reducing consortia which degrade petroleum hydrocarbon.2007

    • Author(s)
      Yuriko Higashioka, Hisaya Kojima and Manabu Fukui.
    • Organizer
      23^<rd> Annual Meeting of Japanese Microbial Ecology
    • Place of Presentation
      Matsuyama, Japan
    • Year and Date
      2007-09-17
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Micobial community structure of hypersaline lakes in Skarvsnes, Antarctica2007

    • Author(s)
      Suematsu, K., Kojima, H., Fukui, M.
    • Organizer
      日本微生物生態学会第23回大会
    • Place of Presentation
      愛媛大学
    • Year and Date
      2007-09-15
    • Related Report
      2007 Annual Research Report
  • [Presentation] 北海道原油汚染土壌における石油炭化水素分解微生物の群集構造2006

    • Author(s)
      東岡由里子
    • Organizer
      第22回日本微生物生態学会
    • Place of Presentation
      東京大学(東京)
    • Year and Date
      2006-11-23
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 中房温泉に見られる光合成細菌と硫酸還元菌を含む微生物マットの硫黄循環2006

    • Author(s)
      久保 響子
    • Organizer
      第22回日本微生物生態学会
    • Place of Presentation
      東京大学(東京)
    • Year and Date
      2006-11-23
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Molecular ecological analysis of microbial communities degrading mono-aromatic hydrocarbons under aerobic and anaerobic coditions2006

    • Author(s)
      Higashioka, Y.
    • Organizer
      11th International Symp. on Microbial Ecology
    • Place of Presentation
      国際会議場(オーストリア・ウィーン)
    • Year and Date
      2006-08-23
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Sulfur isotope fractionation by sulfate-reducing bacteria in Nakabusa and Yumata hot spring n Japan2006

    • Author(s)
      Nakagawa, T.
    • Organizer
      11th International Symp. on Micrbial Ecology
    • Place of Presentation
      国際会議場(オーストリア・ウィーン)
    • Year and Date
      2006-08-23
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Molecular ecological analysis of microbial communities degrading mono-aromatic hydrocarbons under aerobic and anaerobic conditions.2006

    • Author(s)
      Yuriko Higashioka, Hisaya Kojima and Manabu Fukui.
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Wien, Austria
    • Year and Date
      2006-08-23
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Sulfur isotope fractionation by sulfate-reducing bacteria in Nakabusa and Yumata hot springs in Japan..2006

    • Author(s)
      Tastunori Nakagawa, Yumiko Hase and Manabu Fukui.
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Wien, Austria
    • Year and Date
      2006-08-23
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Biogeochemical cycles in saline meromictic Lake Kaiike (Japan).2005

    • Author(s)
      Manabu Fukui.
    • Organizer
      International Biomicrocosmos Workshop for the Enhancement of Rhizophere Research
    • Place of Presentation
      Sapporo, Japan
    • Year and Date
      2005-02-20
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Biogeochemical cycles in saline meromictic Lake Kaiike (Japan).2005

    • Author(s)
      Fukui, M.
    • Organizer
      International Biomicrocosmos Workshop for the Enhancement of Rhizophere Research
    • Place of Presentation
      北大創成機構(札幌)
    • Year and Date
      2005-02-02
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 長野県-中房・湯俣温泉に発達する微生物ストリーマーの硫黄代謝2004

    • Author(s)
      中川達巧
    • Organizer
      日本陸水学会第69回大会
    • Place of Presentation
      新潟大学(新潟)
    • Year and Date
      2004-09-18
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 微生物生態学へのDNAマイクロアレーの応用. 「土壌微生物学におけえるポストゲノムの現状と将来」2004

    • Author(s)
      福井 学
    • Organizer
      日本土壌肥料学会福岡大会
    • Place of Presentation
      丸州大学(福岡)
    • Year and Date
      2004-09-14
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Molecular characterization of community structures and sulfur metabolism within microbial streamers in Japanese hot springs2004

    • Author(s)
      Nakagawa, T.
    • Organizer
      10th International Symp. on Micrbial Ecology
    • Place of Presentation
      国際会議場(カンクン・メキシコ)
    • Year and Date
      2004-08-24
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Molecular characterization of community structures and sulfur metabolism within microbial streamers in Japanese hot springs Nakabusa and Yumata.2004

    • Author(s)
      Tastunori Nakagawa and Manabu Fukui.
    • Organizer
      10th International Symposium on Microbial Ecology
    • Place of Presentation
      Cuncum, Mexico
    • Year and Date
      2004-08-24
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 熱水噴出域(深海熱水噴出孔、陸上鉱山、陸上温泉)における好熱性硫酸菌の多様性2004

    • Author(s)
      中川達巧
    • Organizer
      地球惑星科学関連学会2004年合同大会
    • Place of Presentation
      幕張メッセ(東京)
    • Year and Date
      2004-05-13
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 水道の病原微生物対策2006

    • Author(s)
      金子光美編著
    • Total Pages
      255
    • Publisher
      丸善
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 陸水の事典2006

    • Author(s)
      陸水学会編集
    • Total Pages
      578
    • Publisher
      講談社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 微生物ってなに?〜もっと知ろう!身近な生命〜2006

    • Author(s)
      日本微生物生態学会教育研究部会編著
    • Total Pages
      204
    • Publisher
      日科技連出版
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 環境修復の科学と技術2006

    • Author(s)
      北海道大学大学院環境科学院編
    • Total Pages
      256
    • Publisher
      北海道大学出版会
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 電気泳動なるほどQ&A2004

    • Author(s)
      大森道衛編著
    • Total Pages
      249
    • Publisher
      羊土社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 微生物生態学入門:地球環境を支えるミクロの生物圏2004

    • Author(s)
      日本微生物生態学会教育研究部会編著
    • Total Pages
      237
    • Publisher
      日科技運出版
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary

URL: 

Published: 2004-04-01   Modified: 2016-04-21  

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