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INVESTIGATION OF THE MECHANISM OF AMYLOID FIBRIL FORMATION FROM PRESSURE EXPERIMENTS

Research Project

Project/Area Number 16370054
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKINKI UNIVERSITY

Principal Investigator

AKASAKA Kazuyuki  KINKI UNIVERSITY, SCHOOL OF BIOLOGY-ORIENTED SCIENCE AND TECHNOLOGY, PROFESSOR, 生物理工学部, 教授 (50025368)

Co-Investigator(Kenkyū-buntansha) FUJISAWA Masao  KINKI UNIVERSITY, SCHOOL OF BIOLOGY-ORIENTED SCIENCE AND TECHNOLOGY, LECTURER, 生物理工学部, 講師 (20258065)
ANDO Yukio  KUMAMOTO UNIVERSITY, SCHOOL OF MEDICINE, LECTURER, 医学部, 講師 (20253742)
TACHIBANA Hideki  KOBE UNIVERSITY, FACULTY OF SCIENCE, ASSOCIATE PROFESSOR, 理学部, 助教授 (70126118)
Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥13,700,000 (Direct Cost: ¥13,700,000)
Fiscal Year 2005: ¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 2004: ¥11,600,000 (Direct Cost: ¥11,600,000)
Keywordsamyloid protofibril / hen lysozyme / pressure-jump NMR / high pressure fluorescence / pressure dissociation of protofibrils / activation volume for dissociation / transthyretin mutant / thermodynamic stability of transthyretin / ニワトリリゾチームのS-S / 圧力によるプロトフィブリルの解 / プロトフィブリル解離の活性化体 / トランスサイレチンの変異型 / 高圧NMR / ニワトリリゾチーム変異体 / 圧力解離 / 原子間顕微鏡 / 活性化体積
Research Abstract

1. We have found, by using pressure-jump proton NMR spectroscopy, that the amyloid protofibrils of disulfide-deficient hen lysozyme are dissociated into monomeric species by applying pressure. The dissociation is fully reversible with pressure ; namely, upon lowering pressure, the freed monomeric proteins restart association into protofibrils.
2. The above phenomenon is studied in detail using Trp fluorescence under variable pressure and atomic force microscopy. The analysis of the experimental results have established that the association and dissociation of the disulfide-deficient hen lysozyme takes place by the linear polymerization mechanism, in which the monomeric protein is attached and detached to and from one end of the protofibril, respectively. The dissociation rate is strongly pressure-dependent. The analysis of the pressure dependence shows that the activation volume for the dissociation is negative (ΔV^<o【double plus】>=-50.5±1.60 ml mol^<-1>) and that the activation compressibility is also negative. These results have led us to conclude that the protofibril is a high-volume state, partial hydration of which leads to the activated state for dissociation.
3. Thermodynamic stability of the wild-type and V30M mutant of transthyretin is studied as a function of pressure using Trp fluorescence as monitor in the temperature range between 0 and 37℃. The stability extrapolated to 1 bar indicates that V30M mutant is less stable in the entire temperature range studied. The results confirms our earlier conclusion from high pressure NMR that the amyloid fiber formation of V30M mutant is correlated to its thermodynamic instability.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (16 results)

All 2006 2005 2004

All Journal Article (16 results)

  • [Journal Article] Probing Conformational Fluctuation of Proteins by Pressure Perturbation2006

    • Author(s)
      K.Akasaka
    • Journal Title

      Chemical Reviews Thematic Issue "Protein Dynamics and Folding" (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The Use of High Pressure NMR to Study Ptotein Folding2006

    • Author(s)
      M.Lassalle
    • Journal Title

      Methods in Molecular Biology (edited by Yawen Bai and Ruth Nussinov) (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Conformational fluctuations of proteins revealed by variable pressure NMR2006

    • Author(s)
      H.Li
    • Journal Title

      Biochimica et Biophysica Acta, Special Issuue (edited by R.Range) 1764

      Pages: 331-345

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Probing Conformational Fluctuation of Proteins by Pressure Perturbation2006

    • Author(s)
      K.Akasaka
    • Journal Title

      Chemical Reviews Thematic Issue "Protein Dynamics and Folding" (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The Use of High Pressure NMR to Study Protein Folding Biology2006

    • Author(s)
      M.Lassalle
    • Journal Title

      Methods in Molecular Biology (edited by Y.Bai and R.Nussinov) (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Conformational fluctuations of proteins revealed by variable pressure NMR2006

    • Author(s)
      H.Li
    • Journal Title

      Biochimica et Biophysica Acta Special Issue (edited by R.Range) 1764

      Pages: 331-345

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Pressure-jump NMR Study of Dissociation and Association of Amyloid Protofibrils2006

    • Author(s)
      Y.O.Kamatari
    • Journal Title

      Journal of Molecular Biology 349

      Pages: 916-921

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] 可変圧力NMR法による新しい蛋白質構造パラダイムの構築。2006

    • Author(s)
      北原 亮, 横山茂之, 赤坂一之
    • Journal Title

      分光研究 55・1

      Pages: 10-20

    • NAID

      10016735137

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Conformational fluctuations of proteins revealed by variable pressure NMR.2006

    • Author(s)
      Hua, L., Akasaka, K.
    • Journal Title

      Biochim.Biophys.Acta (Special issue) (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The use of high pressure NMR to study protein folding.2006

    • Author(s)
      Lassalle, M.W., Akasaka, K.
    • Journal Title

      Method in Molecular Biology (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Pressure-jump NMR Study of Dissociation and Association of A myloid Protofibrils2005

    • Author(s)
      Y.O.Lamatari
    • Journal Title

      Journal of Molecular Biology 349

      Pages: 916-921

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Pressure-jump NMR study of dissociation and association of amyloid protofibrils.2005

    • Author(s)
      Kamatari, Y.O., Yokoyama, S., Tachibana, H., Akasaka, K.
    • Journal Title

      Journal of Molecular Biology 349

      Pages: 916-921

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Pressure-dissociable reversible assembly of naturally denatured lysozyme is a precursor for amyloid fibrils.2004

    • Author(s)
      Tara N.Niraula, Takashi Konno, Hua Li, Hiroaki Yamada, Kazuyuki Akasaka, Hideki Tachibana
    • Journal Title

      Proc.Natl.Acad.Sci.USA 101

      Pages: 4089-4093

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Slow conformational dynamics in the Hamster prion protein.2004

    • Author(s)
      Kazuo Kuwata, Yuji O.Kamatari, Kazuyuki Akasaka, Thomas L.James
    • Journal Title

      Biochemistry 43

      Pages: 4439-4446

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 可変圧力NMRが明かす蛋白質の新しい概念2004

    • Author(s)
      赤坂一之
    • Journal Title

      高圧力の科学と技術 13

      Pages: 328-334

    • Related Report
      2004 Annual Research Report
  • [Journal Article] High pressure NMR spectroscopy for characterizing non-native conformers of proteins2004

    • Author(s)
      Y.O.Kamatari, R.Kitahara, H.Yamada, S.Yokoyama, K.Akasaka
    • Journal Title

      Methods 34

      Pages: 133-143

    • Related Report
      2004 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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