• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Secretory lysosome : the roles of ATG gene products

Research Project

Project/Area Number 16370063
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionJUNTENDO UNIVERSITY

Principal Investigator

UENO Takashi  Juntendo Univ., Dept.of Biochem., Associate professor, 医学部, 助教授 (10053373)

Co-Investigator(Kenkyū-buntansha) TANIDA Isei  Juntendo Univ., Dept.of Biochem., Assistant professor, 医学部, 講師 (30296868)
EZAKI Junji  Juntendo Univ., Dept.of Biochem., Assistant professor, 医学部, 講師 (60232948)
Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥14,900,000 (Direct Cost: ¥14,900,000)
Fiscal Year 2005: ¥6,000,000 (Direct Cost: ¥6,000,000)
Fiscal Year 2004: ¥8,900,000 (Direct Cost: ¥8,900,000)
Keywordsautophagy / lysosome / melanosome / melanogenesis / ATG genes / secretory lysosome / exosome / protein degradation / exosome / オートファゴソーム / メラニン / メラノーマ / プロテオリシス
Research Abstract

The formation of autophagosomes, an essential step in autophagy, is mediated by two ubiquitylation-like modifications, Atg12-Atg5 conjugation and Atg8-lipidation. Lipidation of Atg8 is necessary for Atg8 to be recruited onto autophagosomal membarene, as an integral membrane component. In mammals, there are three Atg8 homologues, LC3, GABARAP, and GATE-16. Of these three, LC3 has been best characterized as a tissue-wide Atg8 homologue, however little is known about the lipidation of GABARAP ********* -melanoma cells, LC3 and GABARAP were abundantly expressed and accumulated when lysosomal proteolysis was inhibited with E64d and pepstatin, suggesting that the two homologues are involved in melanoma autophagy. Discontinuous OptiPrep gradient centrifugation revealed that, in the presence of E64d and pepstatin, the distribution of lipidated form of LC3 (LC3-II) and GABARAP (GABARAP-II) overlaps with that of lysosomal (LGP120) and melanosomal (tyrosinase and TRP-1) markers. The results were further supported by immunocytochemical and immuno electronmicrosopic anlyses showing that LC3-decorated melanosomes accumulate along the cell periphery, particularly on the tips of dendrites. The autophagic turnover of melanosomes occurred under both nutrient-rich and nutrient-deprived conditions. These findings indicate that GABARAP in addition to LC3 has an intrinsic role in melanosome autophagy.
Cultured B16 melanoma cells excrete LC3-positive vesicles in the medium. We purified these excreted vesicles with differential centrifugation and found that the vesicles possess lysosomal (LGP12O, cathepsinL, etc.) and melanosomal (TRP-1 andtyrosinase) markers, in addition to GABARAP and LC3. Electron micrographs of the vesicular fraction revealed that the vesicles are relatively small and homogeneous in size. From these data, we conclude that LC3- and GABARAP-positive vesicles fulfill the characteristics of exosome and secretory lysosomes.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (37 results)

All 2006 2005 2004

All Journal Article (35 results) Book (2 results)

  • [Journal Article] Phosphatidylserine in addition to phosphatidylethanolamine is an in vitro target of the mammalian Atg8 modifiers, LC3, GABARAP, and GATE-16.2006

    • Author(s)
      Sou YS et al.
    • Journal Title

      Journal of Biological Chemistry 281(6)

      Pages: 3017-3024

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The crystal structure of human Atg4b, a processing and de-conjugating enzyme for autophagosome-forming modifiers.2006

    • Author(s)
      Kumanomidou T et al.
    • Journal Title

      Journal of Molecular Biology 355(4)

      Pages: 612-618

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Excess peroxisomes are degraded by autophagic machinery in mammals.2006

    • Author(s)
      Iwata J et al.
    • Journal Title

      Journal of Biological Chemistry 281(7)

      Pages: 4035-404

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Loss of autophagy in the central nervous system causes neurodegeneration in mice.2006

    • Author(s)
      Komatsu M et al.
    • Journal Title

      Nature (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Atg8L/Apg8L is the fourth mammalian modifier of mammalian Atg8 conjugation mediated by human Atg4B, Atg7 and Atg32006

    • Author(s)
      Tanida I et al.
    • Journal Title

      FEBS Journal (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Phosphatidylserine in addition to phosphatidylethanolamine is an in vitro target of the mammalian Atg8 modifiers, LC3, GABARAP, and GATE-16.2006

    • Author(s)
      Sou YS, Tanida I, Komatsu M, Ueno T, Kominami E.
    • Journal Title

      J Biol Chem. 281(6)

      Pages: 3017-3024

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The crystal structure of human Atg4b, a processing and de-conjugating enzyme for autophagosome-forming modifiers.2006

    • Author(s)
      Kumanomidou T, Mizushima T, Komatsu M, Suzuki A, Tanida I, Sou YS, Ueno T, Kominami E, Tanaka K, Yamane T.
    • Journal Title

      J Mol Biol. 355(4)

      Pages: 612-618

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Excess peroxisomes are degraded by autophagic machinery in mammals.2006

    • Author(s)
      Iwata J, Ezaki J, Komatsu M, Yokota S, Ueno T, Tanida I, Chiba T, Tanaka K, Kominami E.
    • Journal Title

      J Biol Chem. 281(7)

      Pages: 4035-404

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Loss of autophagy in the central nervous system causes neurodegeneration in mice.2006

    • Author(s)
      Komatsu M, Waguri S, Chiba T, Murata S, Iwata JI, Tanida I, Ueno T, Koike M, Uchiyama Y, Kominami E, Tanaka K.
    • Journal Title

      Nature (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Atg8L/Apg8L is the fourth mammalian modifier of mammalian Atg8 conjugation mediated by human Atg4B, Atg7 and Atg32006

    • Author(s)
      Tanida I, Sou YS, Minematsu-Ikeguchi N, Ueno T, Kominami E.
    • Journal Title

      FEBS J (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Loss of autophagy in the central nervous system causes neurodegeneration2006

    • Author(s)
      Komatsu M. et al.
    • Journal Title

      Nature (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Excess peroxisomes are degraded by autophagic machinery in mammals.2006

    • Author(s)
      Iwata J. et al.
    • Journal Title

      Journal of Biological Chemistry 281(7)

      Pages: 4035-4041

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The crystal structure of human Atg4b, a processing and de-conjugating enzyme for autophagosome-forming modifiers.2006

    • Author(s)
      Kumanomidou T. et al.
    • Journal Title

      Journal of Molecular Biology 355(4)

      Pages: 612-618

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Phosphatidylserine in addition to phosphatidylethanolamine is an in vitro target of the mammalian Atg8 modifiers, LC3, GABARAP, and GATE-16.2006

    • Author(s)
      Sou Y.S.et al.
    • Journal Title

      Journal of Biological Chemistry 281(6)

      Pages: 3017-3024

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice.2005

    • Author(s)
      Komatsu M et al.
    • Journal Title

      Journal of Cell Biology 169(3)

      Pages: 425-434

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Solution structure of microtubule-associated protein light chain 3 and identification of its functional subdomains.2005

    • Author(s)
      Kouno T et al.
    • Journal Title

      Journal of Biological Chemistry 280(26)

      Pages: 24610-24617

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice.2005

    • Author(s)
      Komatsu M, Waguri S, Ueno T, Iwata J, Murata S, Tanida I, Ezaki J, Mizushima N, Ohsumi Y, Uchiyama Y, Kominami E, Tanaka K, Chiba T.
    • Journal Title

      J Cell Biol. 169(3)

      Pages: 425-434

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Solution structure of microtubule-associated protein light chain 3 and identification of its functional subdomains.2005

    • Author(s)
      Kouno T, Mizuguchi M, Tanida I, Ueno T, Kanematsu T, Mori Y, Shinoda H, Hirata M, Kominami E, Kawano K.
    • Journal Title

      J Biol Chem. 280(26)

      Pages: 24610-24617

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice.2005

    • Author(s)
      Komatsu M. et al.
    • Journal Title

      Journal of Cell Biology 169(3)

      Pages: 425-434

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Solution structure of microtubule-associated protein light chain 3 and identification of its functional subdomains.2005

    • Author(s)
      Kouno T. et al.
    • Journal Title

      Journal of Biological Chemistry 280(26)

      Pages: 24610-24617

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A novel protein-conjugating system for Ufm1, a ubiquitin-fold modifier.2004

    • Author(s)
      Komatsu M. et al.
    • Journal Title

      EMBO Journal 23(9)

      Pages: 2503-2518

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] HsAtg4B/HsApg4B/sutophagin-1 cleaves the carboxyl termini of three human Arg8 homologues and delipidates microtubule-associated protein light chain 3- and GABAA receptor-associated protein-phospholipid conjugates.2004

    • Author(s)
      Tanida I et al.
    • Journal Title

      Journal of Biological Chemistry 279(35)

      Pages: 36268-36276

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] ^1H, ^<13>C, and ^<15>N resonance assignments of human microtubule-associated protein light chain-3.2004

    • Author(s)
      Kouno T. et al.
    • Journal Title

      Journal of Biomolecular NMR 29(3)

      Pages: 415-416

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Role for Rab7 in maturation of late autophagic vacuoles.2004

    • Author(s)
      Jager S et al.
    • Journal Title

      Journal of Cell Science 117(20)

      Pages: 4837-4848

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Human light chain 3/MAP1LC3B is cleaved at its carboxyl-terminal Met121 to expose Gly120 for lipidation and targeting to autophagosomal membranes.2004

    • Author(s)
      Tanida I et al.
    • Journal Title

      Journal of Biological Chemistry 279(46)

      Pages: 47704-47710

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A novel protein-conjugating system for Ufml, a ubiquitin-fold modifier.2004

    • Author(s)
      Komatsu M, Chiba T, Tatsumi K, Iemura S, Tanida I, Okazaki N, Ueno T, Kominami E, Natsume T, Tanaka K.
    • Journal Title

      EMBO J. 23(9)

      Pages: 1977-1986

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] HsAtg4B/HsApg4B/autophagin-1 cleaves the carboxyl termini of three human Atg8 homologues and delipidates microtubule-associated protein light chain 3- and GABAA receptor-associated protein-phospholipid conjugates.2004

    • Author(s)
      Tanida I, Sou YS, Ezaki J, Minematsu-Ikeguchi N, Ueno T, Kominami E.
    • Journal Title

      J Biol Chem. 279(35)

      Pages: 36268-36276

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] ^1H, ^<13>C and ^<15>N resonance assignments of human microtubule-associated protein light chain-3.2004

    • Author(s)
      Kouno T, Mizuguchi M, Tanida I, Ueno I, Kominami E, Kawano K.
    • Journal Title

      J Biomol NMR. 29(3)

      Pages: 415-416

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Role for Rab7 in maturation of late autophagic vacuoles.2004

    • Author(s)
      Jager S, Bucci C, Tanida I, Ueno T, Kominami E, Saftig P, Eskelinen EL.
    • Journal Title

      J Cell Sci. 117(Pt 20)

      Pages: 4837-4848

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Human light chain 3/MAP1LC3B is cleaved at its carboxyl-terminal Met121 to expose Gly12O for lipidation and targeting to autophagosomal membranes.2004

    • Author(s)
      Tanida I, Ueno T, Kominami E.
    • Journal Title

      J Biol Chem. 279(4)

      Pages: 47704-47710

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A novel protein-conjugating system for Ufm1, a ubiquitin-fold modifier.2004

    • Author(s)
      小松雅明その他(M.Komatsu et al.)
    • Journal Title

      EMBO Journal 23(9)

      Pages: 1977-1986

    • Related Report
      2004 Annual Research Report
  • [Journal Article] HsAtg4B/HsApg4B/autophagin-1 cleaves the carboxyl termini of three human Atg8 homologues and delipidates microtubule-associated protein light chain 3- and GABA_A receptor-associated protein-phospholipid conjugates2004

    • Author(s)
      谷田以誠その他(I.Tanida et al.)
    • Journal Title

      Journal of Biological Chemistry 279(35)

      Pages: 36268-36276

    • Related Report
      2004 Annual Research Report
  • [Journal Article] LC3 conjugation system in mammalian autophagy.2004

    • Author(s)
      谷田以誠その他(I.Tanida et al.)
    • Journal Title

      International Journal of Biochemistry and Cell Biology 36(12)

      Pages: 2503-2518

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Role for Rab7 in maturation of late autophagic vacuoles.2004

    • Author(s)
      Jager S.その他 (S.Jager et al.)
    • Journal Title

      Journal of Cell Science 117(Pt20)

      Pages: 4837-4848

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Human light chain 3/MAP1LC3B is cleaved at its carboxyl-terminal Met121 to expose Gly120 for lipidation and and targeting to autophagosomal membranes.2004

    • Author(s)
      谷田以誠その他(I.Tanida et al.)
    • Journal Title

      Journal of Biological Chemistry 279(46)

      Pages: 47704-47710

    • Related Report
      2004 Annual Research Report
  • [Book] Autophagy (Klionsky DJ ed., Landes Bioscience)2004

    • Author(s)
      Ueno T, Tanida I, Kominami E
    • Total Pages
      18
    • Publisher
      Autophagy and neuromuscular diseases.
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] Autophagy2004

    • Author(s)
      上野その他(T.Ueno et al.)
    • Total Pages
      23
    • Publisher
      Landes Bioscience, Georgetown, Texas, U.S.A.
    • Related Report
      2004 Annual Research Report

URL: 

Published: 2004-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi