• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Analysis of mRNA localization mechanism in neuronal cells mediated by splicing-dependent complex, EJC

Research Project

Project/Area Number 16370078
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionTokyo Medical and Dental University (2007)
Kyoto University (2004-2006)

Principal Investigator

KATAOKA Naoyuki  Tokyo Medical and Dental University, Medical Research Institute, Guest Lecturer (60346062)

Project Period (FY) 2004 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥14,110,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥810,000)
Fiscal Year 2007: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2006: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 2005: ¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 2004: ¥4,600,000 (Direct Cost: ¥4,600,000)
Keywordssplicing / Exon Junction Complex / Cap structure / neuronal cells / Nuclear Cap binding Complex / Y14 / cytoplasmic localization / local translation / 細胞質内輸送 / mRNAスプライシング / 飜訳抑制 / EJC / CBP80 / eIF4E / Magoh / mRNA / 細胞内局在 / cEJC / RNA局在
Research Abstract

It has been well accepted that steps of gene expression influence to each other in higher eukaryotes. For example, splicing not only removes intron from pre-mRNAs but also deposits exon junction complex near exon-exon junction of mRNA EJC enhances downstream events, such as translation, transport and nonsense mediated mRNA decay (NMD). Y14 and Magoh, core components of EJC, bind to mRNA in the nucleus and remain bound in the cytoplasm. This has strongly suggested that these proteins have roles in RNA localization NMD. Indeed, homologs of these proteins in Drosophila have been shown to be involved in oskar mRNA localization in oocytes. In addition, others and we also showed that these proteins participate in NMD.
In this research, we hypothesized that EJC also links mRNA splicing with mRNA localization in mammalian cells, and have been investigating the molecular mechanism of mRNA localization in neuronal cells. We have identified by immunostaining that there are granules that contain nuclear cap binding complex (CBC) and Y14 in the shaft regions of neuritis. These granules are associated with microtubules and thought to be transported along them. We also found granules that contain cytoplasmic cap binding protein, eIF4E, in the branched regions of neuronal cells. By performing immunostaining, we demonstrated that both granules contain Dcp1a, which is a marker of P body. These results indicate that there are two different p body-like granules in neuronal cells; one is CBC-EJC containing transportable p body, the other is eIF4E containing anchored p body. Our findings strongly suggest a new regulatory mechanism of local translation for localized mRNAs in neurons.

Report

(5 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (13 results)

All 2008 2007 2006 2005 2004 Other

All Journal Article (10 results) (of which Peer Reviewed: 3 results) Presentation (3 results)

  • [Journal Article] Preparation of efficient splicing extracts from whole cells, nuclei, and cytoplasmic fractions.2008

    • Author(s)
      Kataoka, N
    • Journal Title

      Methods in Molecular Biology 488

      Pages: 357-365

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Preparation of efficient splicing extracts from whole cells, nuclei, and cytoplasmic fractions.2008

    • Author(s)
      Kataoka, N., Dreyfuss, G.
    • Journal Title

      RNA-Protein Interaction Protocols, 2nd edition. (Editor: Ren-Jang Lin) Methods in Molecular Biology 488

      Pages: 357-365

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Regulation of alternative splicing through Clk-mediated SRp75 hyperphosphorylation2008

    • Author(s)
      Yomoda, J.
    • Journal Title

      Genes to Cells 13

      Pages: 233-244

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tissue-specific splicing regulator Fox-1 induces exon skipping by interfering E complex formation on the downstream intron of human Fly gene2007

    • Author(s)
      Fukumura, K.
    • Journal Title

      Nucleic Acids Research 35

      Pages: 5303-5311

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exonjunction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.2006

    • Author(s)
      Kashima, I.
    • Journal Title

      Genes & Development 20

      Pages: 355-367

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Shigella effector IpaH9.8 binds to a splicing factor U2AF35 to modulate host immune responses.2005

    • Author(s)
      Okuda, K
    • Journal Title

      Biochemical and Biophysical Research Communications 333

      Pages: 531-539

    • Related Report
      2005 Annual Research Report
  • [Journal Article] SR proteins preferentially associate with mRNAs in the nucleus and facilitate their export to the cytoplasm.2004

    • Author(s)
      Masuyama, K
    • Journal Title

      Genes to Cells 9

      Pages: 959-965

    • Related Report
      2004 Annual Research Report
  • [Journal Article] RNA length defines RNA export pathway.2004

    • Author(s)
      Masuyama, K.
    • Journal Title

      Genes & Development 18

      Pages: 2074-2085

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Isolation and characterization of post-splicing lariat-intron complexes

    • Author(s)
      Yoshimoto, R.
    • Journal Title

      Nucleic Acids Research (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of post-splicing lariat-intron complexes

    • Author(s)
      Yoshimoto, R., Kataoka, N^*., Okawa, K., Ohno, M. ^* (^*Corresponding authors)
    • Journal Title

      Nucleic Acids Research (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 神経突起中におけるmRNPのリモデリングと輸送から局在への移行2008

    • Author(s)
      片岡直行
    • Organizer
      第10回日本RNA学会年会(第10回RNAミーティング)
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2008-07-24
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Transition from transport to localization by mRNP remodeling in neurons2008

    • Author(s)
      Kataoka, N.
    • Organizer
      10^<th> Annual meeting of Japanese RNA society
    • Place of Presentation
      Sapporo Convention Center
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Mutational analyses of Y14 and Magoh suggest the improper formation of EJC on oskar mRNA in Drosophila mutants2007

    • Author(s)
      片岡直行
    • Organizer
      日本分子生物学会春季シンポジウム
    • Place of Presentation
      兵庫県立淡路夢舞台国際会議場
    • Year and Date
      2007-04-23
    • Related Report
      2007 Annual Research Report

URL: 

Published: 2004-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi