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A frame work for virtual integration of distributed heterogeneous data of breeding/crop experiments by Data Grid technology

Research Project

Project/Area Number 16380011
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Breeding science
Research InstitutionNational Agriculture and Food Research Organization

Principal Investigator

NINOMIYA Seishi  National Agriculture and Food Research Organization, National Agricultural Research Center, Research Manager, 中央農業総合研究センター, 研究管理監 (90355488)

Co-Investigator(Kenkyū-buntansha) IWATA Hiroyoshi  National Agriculture and Food Research Organization, National Agricultural Research Center, Senior Scientist, 中央農業総合研究センター・データマイニング研究チーム, 主任研究員 (00355489)
HORYU Daisuke  National Agriculture and Food Research Organization, National Agricultural Research Center, Senior Scientist, 中央農業総合研究センター・データマイニング研究チーム, 主任研究員 (70355486)
WATANABE Tomoya  National Agriculture and Food Research Organization, National Agricultural Research Center, Team Leader, 中央農業総合研究センター・班点米カメムシ研究チーム, チーム長 (20355548)
SHIMADA Shinji  National Agriculture and Food Research Organization, National Agricultural Research Center, Team Leader, 中央農業総合研究センター・大豆生産安定研究チーム, チーム長 (30355309)
HASEGAWA Toshihiro  National Agriculture and Food Research Organization, National Agricultural Research Center, Senior Scientist, 大気環境研究領域, 主任研究員 (10228455)
Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥13,600,000 (Direct Cost: ¥13,600,000)
Fiscal Year 2006: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 2005: ¥7,300,000 (Direct Cost: ¥7,300,000)
Fiscal Year 2004: ¥3,300,000 (Direct Cost: ¥3,300,000)
Keywordsdata grid / breeding information / crop information / information sharing / data mining
Research Abstract

Huge amount of data sets have been being accumulated through breeding and crop experiments. The data sets are heterogeneous and separated among different experimental stations and are rarely merged for total researches, causing dead storage of valuable data. This study was conducted to develop a frame work that can provide us an environment to virtually integrate such distributed heterogeneous data sets so as to realize analyses on totally merged data sets.
1. Crop database to merge distributed and heterogeneous data sets : Analyzing several types of data sets recorded through breeding and crop experiments in several locations, we defined standard crop data format. Uploaded data sets from users are automatically transformed to the standard format based on style sheet definitions that absorbs heterogeneity so that these are stored in the crop database uniformly. Users can simply upload their ordinal data sets that are locally defined to the database and easily merge data sets from different locations.
2. Integration of crop data and meteorological data : Utilizing MetBroker that can provide us consistent access to distributed and heterogeneous weather databases, a system to semi-automatically integrate crop data with positionally and periodically corresponding weather data was developed.
3. The frame work was tested using more than 150,000 records of rice data collected from several agricultural experimental stations.
4. User manuals in both Japanese and English were provided.
5. The frame work makes it possible to conduct crop modeling and datamining of widely merged data sets, integrating distributed crop data sets and corresponding weather data, which was not easily realized before.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (17 results)

All 2007 2006 2005 2004

All Journal Article (17 results)

  • [Journal Article] CROWIS : A System for Sharing and Integrating Crop and Weather Data2007

    • Author(s)
      Yu, Xinwen
    • Journal Title

      Agriculture Information Research 17・2(印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] CROWIS : A System for Sharing and Integrating Crop and Weather Data2007

    • Author(s)
      Yu, X., A.Yamakawa, T.Kiura, H.Hasegawa, S.Ninomiya
    • Journal Title

      Agric. Info. Res. 17(in press)

    • NAID

      130000116442

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] CROWIS : A system for sharing and integrating crop and weather data2007

    • Author(s)
      Yu, Xinwen
    • Journal Title

      Agricultural Information Research 16・3(In press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Dynamic integration of crop data and corresponding meteorological data based on a standardized data exchange framework2006

    • Author(s)
      Ninomiya, Seishi
    • Journal Title

      Proceeding of AFITA2006

      Pages: 560-564

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] New implementation of MetBroker based on Web ontology2006

    • Author(s)
      Ninomiya, Seishi
    • Journal Title

      Computer in Agriculture and Natural Resources

      Pages: 38-42

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Dynamic integration of crop data and corresponding meteorological data based on a standardized data exchange framework2006

    • Author(s)
      Ninomiya, S., A.Yamakawa, X.Yu
    • Journal Title

      Proc. AFITA2006(ed. V.C. Patil, S. Ninomiya)(MacMillan India LTD., Delhi) ISBN10:1403-93162-3

      Pages: 703-708

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] New implementation of MetBroker based on Web ontology, Computer in Agriculture and Natural Resouces2006

    • Author(s)
      Ninomiya, S., T.Kiura, A.Yamakawa
    • Journal Title

      Proc. the 4th WCCA July 24-26, 2006(ed. F. Zazueta, J. Xin, S. Ninomiya, G Schiefer)(Oralndo, USA, ASAEB, St. Joseph)

      Pages: 38-42

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] BIXイメージブローカーシステムのための農作物画像XML規格の提案とP2Pメッセージハンドラの開発2006

    • Author(s)
      井口信和
    • Journal Title

      農業情報研究 15・3

      Pages: 231-240

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Dynamic integration of crop data and corresponding meteorological data based on a standardized data exchange framework2006

    • Author(s)
      Ninomiya, Seishi
    • Journal Title

      AFITA2006/Information Technology in Agriculture

      Pages: 703-708

    • Related Report
      2006 Annual Research Report
  • [Journal Article] New implementation of MetBroker based on Web ontology2006

    • Author(s)
      Ninomiya, Seishi
    • Journal Title

      Computer in Agriculture and Natural Resources, Proc. the 4th WCCA

      Pages: 38-42

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Web-based Decision Support System for Rural Land Use Planning-WebLUP-a Prototype.Agricultural Engineering International,2006

    • Author(s)
      Adinarayama, A.
    • Journal Title

      Agricultural Engineering International Man.IT 05 005.Vol.VIII.

      Pages: 1-13

    • Related Report
      2006 Annual Research Report
  • [Journal Article] XML形式で記述した農業技術体系データの評価2005

    • Author(s)
      法隆大輔
    • Journal Title

      農業情報研究 14・4

      Pages: 247-260

    • NAID

      130003367870

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Quantitative evaluation of the petal shape variation in Primula sieboldii caused by breeding process in the last 300 year2005

    • Author(s)
      Yousuke Yoshioka
    • Journal Title

      Heredity 13・2

      Pages: 657-663

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Prospective for successful IT in agriculture2005

    • Author(s)
      Seishi Ninomiya
    • Journal Title

      Korean Journal of Agricultural and Forest Meteorology 6・2

      Pages: 108-118

    • Related Report
      2005 Annual Research Report
  • [Journal Article] An approach to agricultural information system based on Grid concept2005

    • Author(s)
      Seishi Ninomiya
    • Journal Title

      EFITA/WCCA2005 Proceedings

      Pages: 1092-1100

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Prospective for successful IT in agriculture2004

    • Author(s)
      Ninomiya, Seishi
    • Journal Title

      Korean Journal of Agricultural and Forest Meteorology 6・2

      Pages: 108-118

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Prospective for successful IT in agriculture2004

    • Author(s)
      Ninomiya, S.
    • Journal Title

      Korean Journal of Agricultural and Forest Meteorology 6(2)

      Pages: 108-118

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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