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Clarification of the mechanisms of growth response to cultivation methods in rice plants with genome information

Research Project

Project/Area Number 16380012
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Crop science/Weed science
Research InstitutionTohoku University

Principal Investigator

GOTO Yusuke  Tohoku University, Graduate School of Agricultural Science, Associate Professor, 大学院農学研究科, 助教授 (80122919)

Co-Investigator(Kenkyū-buntansha) KOKUBUN Makie  Tohoku University, Graduate School of Agricultural Science, Professor, 大学院農学研究科, 教授 (40323084)
NAKAMURA Teiji  Tohoku University, Graduate School of Agricultural Science, Assistant Professor, 大学院農学研究科, 助手 (70155844)
SAITO Mitsuo  Miyagi University, School of Food, Agricultural and Environmental Sciences, Professor, 食産業学部, 教授 (50196010)
NAKAMURA Satoshi  Miyagi University, School of Food, Agricultural and Environmental Sciences, Associate Professor, 食産業学部, 助教授 (00289729)
NEMOTO Keisuke  The University of Tokyo, Graduate School of Agricultural and Life Sciences, Professor, 大学院農学生命科学研究科, 教授 (40211461)
Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥15,500,000 (Direct Cost: ¥15,500,000)
Fiscal Year 2006: ¥4,800,000 (Direct Cost: ¥4,800,000)
Fiscal Year 2005: ¥4,800,000 (Direct Cost: ¥4,800,000)
Fiscal Year 2004: ¥5,900,000 (Direct Cost: ¥5,900,000)
Keywordsgenotype-environment interaction / rice / recombinant inbred linens / tiller number / yield components / irrigation regimes / compensation / QTL / 最高茎数 / 一穂籾数 / 穂数 / 分げつ出現率
Research Abstract

To analyze the effect of deep water irrigation on tiller number (TN), culm thickness (CT) and spikelet number per panicle (SPP) at QTL level, TN, CT, grain yield (YD) and its components of backcross inbred population from the cross between Akihikari (temperate japonica) and IRAT109 (tropical japonica) were investigated under two different water regimes (the standard irrigation and the deep-water irrigation) at the experimental farm of the Miyagi University in 2004 and 2005.
Two-way ANOVA revealed significant genotype-by-irrigation interactions for almost all traits. Among QTLs for TN and panicle number (PN), some QTLs interacted with irrigation (QTLs with great difference in LOD score between two different water regimes or high LOD score in relative parameter [the ratio of the parameters under the standard irrigation and the deep-water irrigation]).
In addition, QTLs for CT and SPP were co-localized with them and had an opposite effect in relative parameter. This suggests the causal relationship between tiller suppression, enlargement of CT and increment of SPP by deep water irrigation. One QTL for CT interacting with irrigation was not corresponded to any QTLs for TN, suggesting the mechanism that deep water irrigation enlarges CT directly (=not only through tiller suppression) also exists. Examining the yield formation at QTL level, QTL for PN on chromosome 12 corresponded to large-effect QTL for YD in a year, suggesting that PN strongly regulates YD at QTL level. But its effect on YD was cancelled out by the opposite effect of SPP, thus QTL for YD is not detected in the other year. The unsuitability of compensatory mechanism at QTL level between PN and SPP determines the expression pattern of QTL for YD.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (14 results)

All 2007 2005

All Journal Article (14 results)

  • [Journal Article] QTLからみたイネ分げつ動態の遺伝子型×水管理交互作用2007

    • Author(s)
      石橋俊明
    • Journal Title

      日本作物学会記事 76巻・別1号

      Pages: 226-227

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] QTLからみたイネ収量性の遺伝子型×水管理交互作用2007

    • Author(s)
      石橋俊明
    • Journal Title

      日本作物学会記事 76巻・別1号

      Pages: 228-229

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Tiller dynamics×irrigation interaction in rice at the QTL level.2007

    • Author(s)
      T.Ishibashi
    • Journal Title

      Japanese Journal of Crop Science Vol.76(Extra issue 1)

      Pages: 226-227

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Yield×irrigation interaction in rice at the QTL level.2007

    • Author(s)
      T.Ishibashi
    • Journal Title

      Japanese Journal of Crop Science Vol.76(Extra issue 1)

      Pages: 228-229

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] QTLからみたイネ分げつ動態の遺伝子型X水管理交互作用2007

    • Author(s)
      石橋俊明
    • Journal Title

      日本作物学会記事 76巻・別2号

      Pages: 226-227

    • Related Report
      2006 Annual Research Report
  • [Journal Article] QTLからみたイネ収量性の遺伝子型×水管理交互作用2007

    • Author(s)
      石橋俊明
    • Journal Title

      日本作物学会記事 76巻・別2号

      Pages: 228-229

    • Related Report
      2006 Annual Research Report
  • [Journal Article] QTL解析を利用したイネ分げつ発育の深水栽培への応答の解析2005

    • Author(s)
      後藤雄佐
    • Journal Title

      日本作物学会記事 74巻・別1号

      Pages: 352-353

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] イネ分げつ発育の同伸性に関するQTL解析2005

    • Author(s)
      松井瑞穂
    • Journal Title

      日本作物学会記事 74巻・別2号

      Pages: 224-225

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] イネF1雑種の分げつ性の解析2005

    • Author(s)
      石橋俊明
    • Journal Title

      日本作物学会記事 74巻・別2号

      Pages: 248-249

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Tillering response of rice to irrigation regimes ; a QTL analysis.2005

    • Author(s)
      Y.Goto
    • Journal Title

      Japanese Journal of Crop Science Vol.74(Extra issue 1)

      Pages: 352-353

    • NAID

      110004531745

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Rice QTLs that control the synchrony in tiller system development.2005

    • Author(s)
      M.Matsui
    • Journal Title

      Japanese Journal of Crop Science Vol.74(Extra issue 2)

      Pages: 224-225

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Tillering behavior of F1 hibrids in rice.2005

    • Author(s)
      T.Ishibashi
    • Journal Title

      Japanese Journal of Crop Science Vol.74(Extra issue 2)

      Pages: 248-249

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] イネ分げつ発育の同伸性に関するQTL解析2005

    • Author(s)
      松井瑞穂
    • Journal Title

      日本作物学会記事 74巻, 別2号

      Pages: 224-225

    • Related Report
      2005 Annual Research Report
  • [Journal Article] イネF1雑種の分げつ性の解析2005

    • Author(s)
      石橋俊明
    • Journal Title

      日本作物学会記事 74巻, 別2号

      Pages: 248-249

    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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