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Study on Hydrogen Evolution in Termite Symbiotic Protists

Research Project

Project/Area Number 16380065
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionRIKEN

Principal Investigator

OHKUMA Moriya  RIKEN, Environmental Molecular Biology Laboratory, Vice Chief Scientist, 工藤環境分子生物学研究室, 副主任研究員 (10270597)

Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥15,600,000 (Direct Cost: ¥15,600,000)
Fiscal Year 2006: ¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 2005: ¥6,100,000 (Direct Cost: ¥6,100,000)
Fiscal Year 2004: ¥6,100,000 (Direct Cost: ¥6,100,000)
KeywordsHydrogen Evolution / Hydrogenase / Symbiosis / Protist / Termite / Expressed Sequence Tags / Hydrogenosome / Cellulose Decomposition / バイオマス資源 / メタトランスクリプトーム / EST
Research Abstract

The cellulolytic symbiotic protists belonging to the phylum Parabasalia in the gut of termites harbor hydrogenosomes, anaerobic energy and molecular hydrogen producing organelles, and play an important role for hydrogen emission from termites. In the termite Coptotermes formosanus that carries only three parabasalian species as gut symbiotic protists, a cDNA library of mixed-population of the gut protists was constructed and used for identification and characterization of a gene encoding cellulase. Expressed sequence tags (EST) analysis of the cDNA library enabled to infer their primary metabolic ability to identify such enzymes as involve in anaerobic energy production in hydrogenosomes. Protist origins of certain genes were identified using protist cells isolated manually, which allowed molecular phylogenetic analyses of the genes. Putative hydrogenases (enzymes evolving molecular hydrogen) were also identified, and among them, two genes from Pseudotrichonympha grassii that play critical roles in cellulose decomposition were hererologously expressed in Escherichia coli. Both of the purified recombinant enzymes preferentially catalyzed hydrogen evolution rather than hydrogen uptake, but the two were distinct in optimal pH for the reaction and in domain structures, suggesting their different physiological roles in the cells. Cellular fractionation experiments revealed that the hydrogenosome fraction exhibited high hydrogen evolving activity but endosymbiotic bacterial (identified as a novel member of Bacteroidales) fraction showed strong hydrogen uptake activity, suggesting that the symbiotic relationship involved inter-species hydrogen transfer. There are various endosymbiotic (intra-cellular) and ectosymbiotic (attached on to cell surface) associations of prokaryotes with gut protist cells, and the microbial community structures in termite guts and coevolution of termites, protists, and their associated bacteria were investigated and elucidated.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (42 results)

All 2007 2006 2005 2004

All Journal Article (41 results) Book (1 results)

  • [Journal Article] The candidate phylum "Termite Group 1" of bacteria : phylogenetic diversity, distribution, and endosymbiont members of various gut flagellated protists2007

    • Author(s)
      Ohkuma, M., et al.
    • Journal Title

      FEMS Microbiol. Ecol. 60

      Pages: 467-476

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Comparison of four protein phylogeny of parabasalian symbionts in termite guts2007

    • Author(s)
      Ohkuma, M., et al.
    • Journal Title

      Mol. Phylogenet. Evol. 42

      Pages: 847-853

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Cospeciation in the triplex symbiosis of termite gut protists (Pseudotrichonympha spp.), their hosts, and the bacterial endosymbionts2007

    • Author(s)
      Noda, S., et al.
    • Journal Title

      Mol. Ecol. 16

      Pages: 1257-1266

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular phylogenetic position of the genera Stephanonympha and Caduceia (Parabasalia) inferred from nuclear small subunit rRNA gene sequences.2007

    • Author(s)
      Noel, C, et al.
    • Journal Title

      J. Eukaryot. Microbiol. 54

      Pages: 93-99

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The candidate phylum "termite group 1"of bacteria-phylogenetic diversity, distribution, and endosymbiont members of various gut flagellated protists2007

    • Author(s)
      Okumura M. et al.
    • Journal Title

      FENS Microbiol. Ecol 60

      Pages: 467-476

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Comparison of four protein phylogeny of parabasalian symbionts in termite gutes2007

    • Author(s)
      Okumura M. et al.
    • Journal Title

      Mol. Phylogenet. Evol. 42

      Pages: 847-853

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Cospeciation in the triplex symbiosis of termite gut protists (Pseudotrichonympha spp.), their hosts, and the bacterial endosymbionts2007

    • Author(s)
      Noda S.et al.
    • Journal Title

      Mol. Ecol. 16

      Pages: 1257-1266

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular phylogenetic position of the genera Stephanonympha and Caduceia (Parabasalia) inferred from nuclear small subunit rRNA gene sequences.2007

    • Author(s)
      Noel C.et al.
    • Journal Title

      J. Eukaryot. Microbiol 54

      Pages: 93-99

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular phylogenetic position of the genera Stephanonympha and Caducela (Parabasalia) inferred from nuclear small subunit rRNA gene sequences.2007

    • Author(s)
      Noel, C., et al.
    • Journal Title

      Journal of Eukaryotic Microbiology 54

      Pages: 93-99

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Comparison of four protein phylogeny of parabasalian symbionts in termite guts2007

    • Author(s)
      Ohkuma, M., et al.
    • Journal Title

      Molecular Phylogenetics and Evolution (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Cospeciation in the triplex symbiosis of termite gut protists (Pseudotrichonympha spp.),their hosts,and the bacterial endosymbionts2007

    • Author(s)
      Noda, S., et al.
    • Journal Title

      Molecular Ecology (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The candidate phylum "Termite Group 1" of bacteria : phylogenetic diversity, distribution,and endosymbiont members of various gut flagellated protists2007

    • Author(s)
      Ohkuma, M., et al.
    • Journal Title

      FEMS Microbiology Ecology (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Effect of temporal sample preservation on molecular study of complex microbial community in the termite gut2006

    • Author(s)
      Deevong, P., et al.
    • Journal Title

      Microbes Environ. 21

      Pages: 78-85

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification and in situ detection of two lineages of Bacteroidales ectosymbionts associated with a termite gut protist, Oxymonas sp.2006

    • Author(s)
      Noda, S., et al.
    • Journal Title

      Microbes Environ. 21

      Pages: 16-22

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification and characterization of ectosymbionts of distinct lineages in Bacteroidales attached to flagellated protists in the gut of termites and a wood-feeding cockroach2006

    • Author(s)
      Noda, S., et al.
    • Journal Title

      Environ. Microbiol 8

      Pages: 11-20

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogenetic and morphological diversity of Bacteroidales members associated with the gut wall of termites2006

    • Author(s)
      Nakajima, H. et al.
    • Journal Title

      Biosci. Biotech. Biochem. 70

      Pages: 211-218

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Effect of temporal sample preservation on molecular study of complex microbial community in the termite gut.2006

    • Author(s)
      Deevong, P. et al.
    • Journal Title

      Microbes Environ. 21

      Pages: 78-85

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification and in situ detection of two lineages of Bacteroidales ectosymbionts associated with a termite gut protist, Oxymonas sp.2006

    • Author(s)
      Noda S.et al.
    • Journal Title

      Microbes Environ, 21

      Pages: 16-22

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification and characterization of ectosymbionts of distinct lineages in Bacteroidales attached to flagellated protists in the gut of termites and a wood-feeding cockroach2006

    • Author(s)
      Noda S.et al.
    • Journal Title

      Environ. Microbiol. 8

      Pages: 11-20

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogenetic and morphological diversity of Bacteroidales members associated with the gut wall of termites2006

    • Author(s)
      Nakajima H. et al.
    • Journal Title

      Biosci. Biotech. biochem. 70

      Pages: 211-218

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification and in situ detection of two lineages of Bacteroiddales ectosymbionts associated with a termite gut protist, Oxymonas sp.2006

    • Author(s)
      Noda, S., et al.
    • Journal Title

      Microbes and Environments 21

      Pages: 16-22

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Effect of temporai sample preservation on molecular study of complex microbial community in the termite gut2006

    • Author(s)
      Deevong, P., et al.
    • Journal Title

      Microbes and Environments 21

      Pages: 78-85

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Identification and characterization of ectosymbionts of distinct lineages in Bacteroidales attached to flagellated protists in the gut of termites and a wood-feeding cockroach2006

    • Author(s)
      Noda, S., et al.
    • Journal Title

      Environ.Microbiol 8

      Pages: 11-20

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Phylogenetic and morphological diversity of Bacteroidales members associated with the gut wall of termites2006

    • Author(s)
      Nakajima, H. et al.
    • Journal Title

      Biosci.Biotech.Biochem 70

      Pages: 211-218

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Endosymbiotic Bacteroidales bacteria of the flagellated protist Pseudotrichonympha grassii in the gut of the termite Coptotermes formosanus2005

    • Author(s)
      Noda, S., et al.
    • Journal Title

      Appl. Environ. Microbiol. 71

      Pages: 8811-8817

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular phylogeny of parabasalids inferred from small subunit rRNA sequences, with emphasis on the Hypermastigea2005

    • Author(s)
      Ohkuma, M. et al.
    • Journal Title

      Mol. Phylogenet. Evol. 35

      Pages: 646-655

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Intra- and interspecific comparison of bacterial diversity and community structure support coevolution of gut microbiota and termite host2005

    • Author(s)
      Hongoh, Y. et al.
    • Journal Title

      Appl. Environ. Microbiol. 71

      Pages: 6590-6599

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Spatial distribution of bacterial phylotypes in the gut of the termite Reticulitermes speratus and bacterial community colonizing on the gut epithelium.2005

    • Author(s)
      Nakajima, H. et al.
    • Journal Title

      FEMS Microbiol. Ecol. 54

      Pages: 247-255

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular cloning and characterization of a cellulase gene from a symbiotic protist of lower termite, Coptotermes formosa nus2005

    • Author(s)
      T.Inoue et al.
    • Journal Title

      Gene 349

      Pages: 67-75

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Comparison of bacterial communities in the alkaline gut segment among various species of higher termites2005

    • Author(s)
      T.Thongaram et al.
    • Journal Title

      Extremophiles 9

      Pages: 229-238

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Endosymbiotic Bacteroidales bacteria of the flagellated protist Pseudotrichonympha grassii in the gut of the termite Coptotermes formosanus2005

    • Author(s)
      Noda S.et al.
    • Journal Title

      Appl. Environ. Microbiol. 71

      Pages: 8811-8817

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular phylogeny of parabasalids inferred from small subunit rRNA sequences, with emphasis on the Hypermastigea2005

    • Author(s)
      Okumura M. et al.
    • Journal Title

      Mol. Phylogenet. Evol. 35

      Pages: 6446-655

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Intra-and interspecific comparison of bacterial diversity and community structure support coevolution of gut microbiota and termite host.2005

    • Author(s)
      Hongoh Y. et al.
    • Journal Title

      Appl. Environ. Microbiol. 71

      Pages: 6590-6599

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] spatial distribution of bacterial phylotypes in the gut of the termite Reticulitermes speratus and bacterial community colonizing on the gut epithelium.2005

    • Author(s)
      Nakajima H. et al.
    • Journal Title

      FEMS microbiol. Ecol. 54

      Pages: 247-255

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular phylogeny of parabasalids inferred from small subunit rRNA sequences, with emphasis on the Hypermastigea2005

    • Author(s)
      Ohkuma, M. et al.
    • Journal Title

      Mol.Phylogenet.Evol. 35

      Pages: 646-655

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Spatial distribution of bacterial phylotypes in the gut of the termite Reticulitermes speratus and bacterial community colonizing on the gut epithelium.2005

    • Author(s)
      Nakajima, H. et al.
    • Journal Title

      FEMS Microbiol.Ecol. 54

      Pages: 247-255

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Intra- and interspecific comparison of bacterial diversity and community stracture support coevolution of gut microbiota and termite host2005

    • Author(s)
      Hongoh, Y. et al.
    • Journal Title

      Appl.Environ.Microbiol. 71

      Pages: 6590-6599

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Endosymbiotic Bacteroidales bacteria of the flagellated protist Pseudotrichonympha grassii in the gut of the termite Coptotermes formosanus2005

    • Author(s)
      Noda, S., et al.
    • Journal Title

      Appl.Environ.Microbiol. 71

      Pages: 8811-8817

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Molecular cloning and characterization of a cellulase gene from a symbiotic protist of lower termite, Coptotermes formosanus2005

    • Author(s)
      T.Inoue et al.
    • Journal Title

      Gene (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Comparison of bacterial communities in the alkaline gut segment among various species of higher termites2005

    • Author(s)
      T.Thongaram et al.
    • Journal Title

      Extremophiles (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Isolation and detection of methanogens from the gut of higher termites2004

    • Author(s)
      P.Deevong, et al.
    • Journal Title

      Microbes Environ. 19

      Pages: 221-226

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2004 Annual Research Report
  • [Book] バイオテクノロジーシリーズ 難培養微生物研究の最新技術-未利用微生物資源へのアプローチ-2004

    • Author(s)
      工藤俊章, 大熊盛也(監修)
    • Total Pages
      265
    • Publisher
      (株)シーエムシー出版
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2004 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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