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ANALYSIS OF GENES AND PROTEINS RELATED TO COCHLEAR DAMAGE USING DNA MICROARRAY AND PROTEOMICS

Research Project

Project/Area Number 16390486
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Otorhinolaryngology
Research InstitutionThe University of Tokyo

Principal Investigator

YAMASOBA Tatsuya  The University of Tokyo, Faculty of Medicine, Assistant Professor, 医学部附属病院, 助教授 (60251302)

Co-Investigator(Kenkyū-buntansha) YAMADA Chikako  The University of Tokyo, Faculty of Medicine, Assistant, 医学部附属病院, 助手 (90376434)
KONDO Kenji  The University of Tokyo, Faculty of Medicine, Assistant, 医学部附属病院, 助手 (40334370)
TANOKURA Masaru  The University of Tokyo, Faculty of Agriculture, Professor, 大学院・農学生命科学研究科, 教授 (60136786)
Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥13,800,000 (Direct Cost: ¥13,800,000)
Fiscal Year 2006: ¥4,500,000 (Direct Cost: ¥4,500,000)
Fiscal Year 2005: ¥4,500,000 (Direct Cost: ¥4,500,000)
Fiscal Year 2004: ¥4,800,000 (Direct Cost: ¥4,800,000)
KeywordsDNA MICROARRAY / PROTEOMICS / GCOCHLEA / INNER EAR / PRESBYCUSIS / AGING / ミトコンドリア / ミトコンドリアDNA / カロリー制限 / DNAチップ / 難聴 / 音響外傷
Research Abstract

We generated a PolgD257A/D257A (D257A) mutant mouse (a transgenic mouse in which point mutations were introduced into exonuclease domain (Proof Reading activity domain) of DNA polymerase gamma) as a presbycusis animal model. The D257A mouse exhibited ABR threshold shifts of an average of 41-52 dBSPL at the age of 9 month, whereas no ABR threshold shifts were observed in a wild type mouse at this age, indicating that hearing loss appeared by aging early in D257A mouse. Histologically, this mutant mouse exhibited severe degeneration of the cochlear hair cells and spiral ganglion cells. DNA microarray analysis of their cochleae showed a decrease in genes related to sound perception, neurotransmission, ion metabolism, energy metabolism, DNA synthesis, and DNA repair and an increase in genes related to inflammation and apoptosis. We also generated another animal model showing mitochondria dysfunction by feeding CBA mouse with germanium dioxide. Within 3 months from starting the germanium fe … More eding, this mouse developed profound hearing loss and severe degeneration of the stria vascularis and an organ of Corti, and DNA microarray analysis revealed gene expression changes similar to those observed in D257A mouse. In another experiment, we examined whether caloric restriction (CR) could prevent presbycusis in C57BL/6 mouse, a presbycusis model mouse. The C57BL/6 mouse not subjected to CR developed hearing loss and degeneration of the cochlear tissues by the age of 17 months, and CR prevented the manifestation of hearing loss and cochlear degeneration until this age. DNA microarray analysis of the cochlea in C57BL/6 mouse both subjected and not subjected to CR revealed that CR prevented age-related changes of gene expression, such as a decrease of genes related to sound perception, neurotransmission, and energy metabolism, and an increase of genes related to inflammation and apoptosis. We confirmed the expression changes of several important genes by means of real time RT-PCR analysis and their related proteins by performing immunohistochemistry. Finally, we did DNA microarray analysis for mouse exposed to intense sound and are currently doing detailed analysis for several genes that are considered keys in the manifestation of noise0-induced hearing loss. Less

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (29 results)

All 2006 2005 2004 Other

All Journal Article (28 results) Book (1 results)

  • [Journal Article] Supporting cell proliferation after hair cell injury in mature guinea pig cochlea in vivo.2006

    • Author(s)
      Yamasoba T, Kondo K
    • Journal Title

      Cell and Tissue Research 325

      Pages: 23-31

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Cochlear damage due to germanium-induced mitochondrial dysfunction in guinea pigs.2006

    • Author(s)
      Yamasoba T, Goto Y, Komaki H, Mimaki M, Sudo A, Suzuki M
    • Journal Title

      Neuroscience Letters 395

      Pages: 18-22

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Supporting cell proliferation after hair cell injury in mature guinea pig cochlea in vivo2006

    • Author(s)
      Yamasoba T, Kondo K
    • Journal Title

      Cell and Tissue Research 325

      Pages: 23-31

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Cochlear damage due to germanium-induced mitochondrial dysfunction in guinea pigs2006

    • Author(s)
      Yamasoba T, Goto Y, Komaki H, Mimaki M, Sudo A, Suzuki M
    • Journal Title

      Neuroscience Letter 395

      Pages: 18-22

    • Related Report
      2006 Annual Research Report 2005 Annual Research Report
  • [Journal Article] Ebselen prevents noise-induced excitotoxicity and temporary threshold shift.2005

    • Author(s)
      Yamasoba T, Pourbakht A, Sakamoto T, Suzuki M
    • Journal Title

      Neuroscience Letters 380

      Pages: 234-238

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Mitochondrial DNA mutations, oxidative stress, and apoptosis in mammalian aging.2005

    • Author(s)
      Kujoth GC, Hiona A, Pugh TD, Someya S, Panzer K, Wohlgemuth S, Hofer T, Seo AY, Sullivan R, Jobling WA, Morrow JD, Van Remmen H, Sedivy JM, Yamasoba T, Tanokura M, Weindruch R, Leeuwenburgh C, Prolla TA
    • Journal Title

      Science 309

      Pages: 481-484

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] 老人性難聴の予防.2005

    • Author(s)
      染谷慎一, 山岨達也, 田之倉優
    • Journal Title

      耳鼻咽喉科・頭頚部外科学の最新医療(加我君孝・小宗静男編)

      Pages: 110-113

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Up-to-date of medicine for otolaryngology and head and neck surgery.2005

    • Author(s)
      Someya S, Yamasoba T, Tanokura M
    • Journal Title

      Prevention of presbycusis. (Kaga K & Komune S (Eds).)(Sentan-iryogijutsu-kenkyusyo, Tokyo)(in Japanese)

      Pages: 110-113

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Mitochondrial DNA mutations, oxidative stress and apoptosis in mammalian aging.2005

    • Author(s)
      Kujoth GC, Hiona A, Pugh TD, Someya S, Panzer K, Wohlgemuth S, Hofer T, Seo AY, Sullivan R, Jobling WA, Morrow JD, Van Remmen H, Sedivy JM, Yamasoba T, Tanokura M, Weindruch R, Leeuwenburgh C, Prolla TA.
    • Journal Title

      Science 309

      Pages: 481-484

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Ototoxicity after use of neomycin eardrops is unrelated to A1555G point mutation in mitochondrial DNA.2004

    • Author(s)
      Yamasoba T, Tsukuda K
    • Journal Title

      Journal of Otology and Laryngology 118

      Pages: 546-550

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Purification and characterization of an aminopeptidase from Lactobacillus helveticus JCM 1004.2004

    • Author(s)
      Pan D, Tanokura M
    • Journal Title

      Food Chem 88

      Pages: 511-516

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain.2004

    • Author(s)
      Furusawa Y, Nagarajan V, Tanokura M et al.
    • Journal Title

      J Mol Biol 342

      Pages: 1041-1052

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Backbone ^1H, ^<13>C, and ^<15>N resonance assignment of the N-terminal domain of human eRF12004

    • Author(s)
      Oda Y, Muramatsu T, Yumoto F, Ito M, Tanokura M
    • Journal Title

      J Biomol NMR 30

      Pages: 109-110

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Cloning, purification, crystallization and preliminary crystallographic analysis of acylphosphatase from Pyrococcus horikoshii.2004

    • Author(s)
      Miyazono K, Kudo N, Tanokura M
    • Journal Title

      Acta Crystal 60

      Pages: 1135-1136

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Common mechanism of ligand recognition by Group-II/III WW. domains-Redefining their functional classification2004

    • Author(s)
      Kato Y, Nagata K, Takahashi M et al.
    • Journal Title

      J.Biol Chem 279

      Pages: 31833-31841

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Caloric restriction suppresses apoptotic cell death in the mammalian cochlea and leads to prevention of presbycusis.

    • Author(s)
      Someya S, Yamasoba T, Weindruch R, Prolla TA, Tanokura M
    • Journal Title

      Neurobiology of Aging (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The role of mtDNA mutations in the pathogenesis of age-related hearing loss in mice carrying a mutator DNA polymerase γ.

    • Author(s)
      Someya S, Yamasoba T, Kujoth GC, Pugh TD, Weindruch R, Tanokura M, Prolla TA
    • Journal Title

      Neurobiology of Aging (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Role of mitochondrial dysfunction and mitochondrial DNA mutations in age-related hearing loss.

    • Author(s)
      Yamasoba T, Someya S, Yamada C, Weindruch R, Prolla TA, Tanokura M
    • Journal Title

      Hearing Research (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Mechanisms of noise-induced hearing loss indicate multiple methods of prevention.

    • Author(s)
      LePrell CG, Yamashita D, Minami SB, Yamasoba T, Miller JM
    • Journal Title

      Hearing Research (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Caloric restriction suppresses apoptotic cell death in the mammalian cochlea and leads to prevention of presbycusis.

    • Author(s)
      Someya S, Yamasoba T, Weindruch R, Prolla TA, Tanokura M
    • Journal Title

      Neurobiology of Aging (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The role of mtDNA mutations in the pathogenesis of age-related hearing loss in mice carrying a mutator DNA polymerase γ.

    • Author(s)
      Someya S, Yamasoba T, Kujoth GC, Pugh TD, Weindruch R, Tanokura M, Prolla TA
    • Journal Title

      Neurobiology of Aging (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Role of mitochondrial dysfunction and mitochondrial DNA mutations in age-related hearing loss.

    • Author(s)
      Yamasoba T, Someya S, Yamada C, Weindruch R, Prolla TA, Tanokura M
    • Journal Title

      Hearing Research (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Mechanisms of noise-induced hearing loss indicate multiple methods of prevention.

    • Author(s)
      LePrell CG, Yamashita D, Minami SB, Yamasoba T, Miller JM
    • Journal Title

      Hearing Research (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Caloric restriction suppresses apoptotic cell death in the mammalian cochlea and leads to prevention of presbycusis.

    • Author(s)
      Someya S, Yamasoba T, Weindruch R, Prolla TA, Tanokura M
    • Journal Title

      Neurobiology of Aging (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The role of mtDNA mutations in the pathogenesis of age-related hearing loss in nmice carrying a mutator DNA polymerase γ.

    • Author(s)
      Someya S, Yamasoba T, Kujoth GC, Pugh TD, Weindruch R, Tanokura M, Prolla TA
    • Journal Title

      Neurobiology of Aging (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Role of mitochondrial dysfunction and mitochondrial DNA mutations in age-related hearing loss.

    • Author(s)
      Yamasoba T, Someya S, Yamada C, Weindruch R, Prolla TA, Tanokura M
    • Journal Title

      Hearing Research (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Mechanisms of noise-induced hearing loss indicate multiple methods of prevention.

    • Author(s)
      LePrell CG, Yamashita D, Minami SB,,,, Yamasoba T, Miller JM
    • Journal Title

      Hearing Research (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Ebselen prevents noise-induced excitotoxicity and temporary threshold shift.

    • Author(s)
      Yamasoba T, Pourbakht A, Sakamoto T, Suzuki M
    • Journal Title

      Neuroscience Letters (in press)

    • Related Report
      2004 Annual Research Report
  • [Book] 耳鼻咽喉科・頭頚部外科学の最新医療:老人性難聴の予防2005

    • Author(s)
      染谷慎一, 山岨達也, 田之倉優
    • Publisher
      先端医療技術研究社
    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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