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Molecular phylogenetic study on the movements of small mammals across the continents during the late Tertiary.

Research Project

Project/Area Number 16405011
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section海外学術
Research Field Biodiversity/Systematics
Research InstitutionHokkaido University

Principal Investigator

SUZUKI Hitoshi  Hokkaido Univ., Fac. of Environm. Earth Sci., Asso. Prof., 大学院地球環境科学研究科, 助教授 (40179239)

Co-Investigator(Kenkyū-buntansha) TAMATE Hidetoshi  Yamagata Univ., Fac. of Sci., Prof., 理学部, 教授 (90163675)
TSUCHIYA Kimiyuki  Tokyo Univ. of Agr., Fac. of Agr., Vis. Prof., 農学部, 客員教授 (30155402)
Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥4,500,000 (Direct Cost: ¥4,500,000)
Fiscal Year 2006: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 2005: ¥1,600,000 (Direct Cost: ¥1,600,000)
Fiscal Year 2004: ¥1,400,000 (Direct Cost: ¥1,400,000)
Keywordsbiogeography / molecular phylogeny / nuclear gene sequence / species diversity / gene diversity / tertiary global environmental changes / Mus / Rattus
Research Abstract

Mitochondrial (cytochrome b, 12S rRNA) and nuclear (IRBP, RAG1) gene sequences were determined in various species of small mammals including mustelids, talpids, and murids (e.g., the Old World murine genera Mus, Apodemus, and Rattus). In the case of Mus, for example, phylogenetic analysis of the newly and previously available sequences support recognition of four subgenera within Mus (Mus, Coelomys, Nannomys, and Pyromys), with an unresolved basal polytomy. Our data further indicate that the subgenus Mus contains three distinct 'species groups': (1) a Mus booduga Species Group, also including Mus terricolor and Mus fragilicauda (probably also Mus famulus); (2) a Mus cervicolor Species Group, also including Mus caroli and Mus cookii; and (3) a Mus musculus Species Group, also including Mus macedonicus, Mus spicilegus, and Mus spretus. Species diversity in Eurasian Mus is probably explicable in terms of several phases of range expansion and vicariance, and by a propensity within the group to undergo biotope transitions. IRBP and RAG1 molecular clocks for Mus date the origin of subgenera to around 5-6 mya and the origin of Species Groups within subgenus Mus to around 2-3 mya. The temporal pattern of evolution among Eurasian Mus is more complex than that within the Eurasian temperate genus Apodemus.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (53 results)

All 2007 2006 2005 2004

All Journal Article (52 results) Book (1 results)

  • [Journal Article] Onset of cryptic vicariance in the Japanese dormouse Glirulus japonicus in the Late Tertiary, inferred from mitochondrial and nuclear DNA analysis.2007

    • Author(s)
      Shumpei P. Yasuda
    • Journal Title

      Journal of Zoological Systematics and Evolutionary Research 45

      Pages: 155-162

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Complex phylogeographic structuring in a continental small mammal from East Asia, the rice field mouse, Mus caroli (Rodentia, Muridae).2007

    • Author(s)
      Tomofumi Shimada
    • Journal Title

      Mammal Study 32

      Pages: 49-62

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Rediscovery of Mus nitidulus Blyth, 1859 (Rodentia, Muridae), an endemic murine rodent of the central basin of Myanmar.2007

    • Author(s)
      Tomofumi Shimada
    • Journal Title

      Zootaxa (In press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Onset of cryptic vicariance in the Japanese dormouse Glirulus japonicus in the Late Tertiary, inferred from mitochondrial and nuclear DNA analysis.2007

    • Author(s)
      Shumpei P.Yasuda
    • Journal Title

      Journal of Zoological Systematics and Evolutionary Research 45

      Pages: 155-162

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Rediscovery of Mug nitidulus Blyth, 59 (Rodentia, Muridae), anendemicmurinerodentof the central basin of Myanmar.2007

    • Author(s)
      Tomofumi Shimada
    • Journal Title

      Zootaxa (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Onset of cryptic vicariance in the Japanese dormouse Glirulus japonicus in the Late Tertiary, inferred from mitochondrial and nuclear DNA analysis2007

    • Author(s)
      Shumpei P. Yasuda
    • Journal Title

      Journal of Zoological Systematics and Evolutionary Research 45

      Pages: 155-162

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Rediscovery of Mus nitidulus Blyth, 1859 (Rodentia, Muridae), an endemic murine rodent of the central basin of Myanmar2007

    • Author(s)
      Tomofumi Shimada
    • Journal Title

      Zootaxa (in press)

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Phylogeographic origin of Hokkaido house mice (Mus musculus) as indicated by genetic markers with maternal, paternal and biparental inheritance.2006

    • Author(s)
      Terashima, M.
    • Journal Title

      Heredity 96

      Pages: 128-138

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationships within parrots (psittacidae) inferred from mitochondrial cytochrome-b gene sequences.2006

    • Author(s)
      Astuti D.
    • Journal Title

      Zool. Sci. 23

      Pages: 191-198

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of pinnipedia : single origin with affinity to musteloidea.2006

    • Author(s)
      Sato JJ
    • Journal Title

      Zool. Sci. 23

      Pages: 125-146

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differentiation in the lesser Japanese mole in Eastern Honshu, Japan, indicated by nuclear and mitochondrial Gene.2006

    • Author(s)
      Masahiro A. Iwasa
    • Journal Title

      Zool. Sci. 23

      Pages: 955-961

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular evolution and phylogeography of West-Palaearctic wood mices of the genus Sylvaemus based on the data on variation of nuclear (IRBP) and mitochondrial (Cyt B) DNA genes.2006

    • Author(s)
      Chelomina G.N.
    • Journal Title

      ZOOLOGICHESKY ZHURNAL 85

      Pages: 219-234

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationships within parrots (psittacidae) inferred from mitochondrial cytochrome-b gene sequences.2006

    • Author(s)
      Astuti D.
    • Journal Title

      Zool Sci. 23

      Pages: 191-198

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of pinnipedia : single origin with affinity to musteloidea.2006

    • Author(s)
      Sato JJ.
    • Journal Title

      Zool Sci. 23

      Pages: 125-146

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differentiation in the lesser Japanese mole in Eastern Honshu, Japan, indicated by nuclear and mitochondrial Gene.2006

    • Author(s)
      Masahiro A.Iwasa
    • Journal Title

      Zool. Sci. 23

      Pages: 955-961

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of Pinnipedia : Single origin with affinity to Musteloidea.2006

    • Author(s)
      Sato, J.J.
    • Journal Title

      Zoological Science 23

      Pages: 125-146

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Molecular evolution and phylogeography of West-Palaearctic wood mices of the genus Sylvaemus based on the data on variation of nuclear (IRBP) and mitochondrial (Cyt B) DNA genes.2006

    • Author(s)
      Chelomina G.N.
    • Journal Title

      Zoologichesky Zhurnal 85

      Pages: 219-234

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Phylogenetic relationships within parrots (Psittacidae) inferred from mitochondrial cytochrome-b gene sequences.2006

    • Author(s)
      Dwi Astuti
    • Journal Title

      Zoological Science 23

      Pages: 191-198

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Phylogeographic origin of Hokkaido house mice (Mus musculus) as indicated by maternal, paternal and biparental inheritance molecules2006

    • Author(s)
      Terashima, Mie
    • Journal Title

      Heredity 96

      Pages: 128-138

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Independent nonframeshift deletions in the MC1R gene are not associated with melanistic coat coloration in three mustelid lineages.2005

    • Author(s)
      Hosoda, T.
    • Journal Title

      Journal of Heredity 96

      Pages: 607-613

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogeographic patterning of mtDNA in the widely distributed harvest mouse Micromys minutus suggests dramatic cycles of range contraction and expansion during the mid- to late Pleistocene.2005

    • Author(s)
      Yasuda, S. P.
    • Journal Title

      Canadian Journal of Zoology 83

      Pages: 1411-1420

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Preliminary genetic characterization of two lineages of black rats (Rattus rattus sensu lato) in Japan, with evidence for introgression at several localities.2005

    • Author(s)
      Chinen, A. A.
    • Journal Title

      Genes & Genetic Systems 80

      Pages: 367-375

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] An evolutionary view on the Japanese talpids based on nucleotide sequences.2005

    • Author(s)
      Shinohara, A.
    • Journal Title

      Mammal Study(supplement) 30

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Restriction fragment length polymorphism of nuclear rDNA in Sorex paecutiens/shinto group (Eulipotyphla, Soricidae).2005

    • Author(s)
      Yukako Naitoh
    • Journal Title

      Mammal Study 30

      Pages: 101-107

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Independent nonframeshift deletions in the MC 1R gene are not associated with melanistic coat coloration in three mustelid lineages.2005

    • Author(s)
      Hosoda, T.
    • Journal Title

      Journal of Heredity 96

      Pages: 607-613

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogeographic patterning of mtDNA in the widely distributed harvest mouse Micromys minutus suggests dramatic cycles of range contraction and expansion during the mid-to late Pleistocene.2005

    • Author(s)
      Yasuda, S.P.
    • Journal Title

      Canadian Journal of Zoology 80

      Pages: 367-375

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Preliminary genetic characterization of two lineages of black rats (Rattus rattus sensu lato) in Japan, with evidence for introgression at several localities.2005

    • Author(s)
      Chinen, A.A.
    • Journal Title

      Genes & Genetic Systems 80

      Pages: 367-375

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] An evolutionary view on the Japanese talpids based on nucleotide sequences.2005

    • Author(s)
      Shinohara, A.
    • Journal Title

      Mammal Study 30:(supplement)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Restriction fragment length polymorphism of nuclear rDNA in Sorex caecutiens/shinto group (Eulipotyphla, Soricidae).2005

    • Author(s)
      Yukako Naitoh
    • Journal Title

      Mammal Study 30

      Pages: 101-107

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Independent nonframeshift deletions in the MC1R gene are not associated with melanistic coat coloration in three mustelid lineages2005

    • Author(s)
      Hosoda, Tetsuji
    • Journal Title

      Journal of Heredity 96

      Pages: 607-613

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Restriction fragment length polymorphism of nuclear rDNA in Sorex caecutiens/shinto group (Eulipotypha, Soricidae)2005

    • Author(s)
      Naitoh, Yoko
    • Journal Title

      Mammal Study 30

      Pages: 101-108

    • Related Report
      2005 Annual Research Report
  • [Journal Article] An evolutionary view on the Japanese talpids based on nucleotide sequences2005

    • Author(s)
      Shinohara, Akio
    • Journal Title

      Mammal Study 30(supplement)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 野生哺乳類、特にネズミ類の遺伝学2005

    • Author(s)
      鈴木 仁
    • Journal Title

      動物遺伝育種研究 33

      Pages: 39-46

    • NAID

      10016876059

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Phylogeographic patterning of mtDNA in the widely distributed harvest mouse Micromys minutus suggests dramatic cycles of range contraction and expansion during the mid- to late Pleistocene2005

    • Author(s)
      Yasuda, Shumpei P
    • Journal Title

      Canadian Journal of Zoology 83

      Pages: 1411-1420

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Temporal, spatial, and ecological modes of evolution of Eurasian Mus based on mitochondrial and nuclear gene sequences.2004

    • Author(s)
      Suzuki, H
    • Journal Title

      Mol. Phylogenet. Evol. 33

      Pages: 626-646

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular phylogeny and biogeography of Oriental voles : genus Eothenomys (Muridae, Mammalia).2004

    • Author(s)
      Luo, J.
    • Journal Title

      Mol. Phylogenet. Evol. 33

      Pages: 349-362

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationships and divergence times of the genus Tokudaia within Murinae (Muridae; Rodentia) inferred from the nucleotide sequences encoding the mitochondrial cytochrome b gene and nuclear recombination-activating gene 1 and interphotoreceptor retinoid-binding protein.2004

    • Author(s)
      Sato, J. J.
    • Journal Title

      Canadian Journal of Zoology 82

      Pages: 1343-1351

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Characterization and sequencing of a novel positive regulatory element for exfoliative toxin A gene expression in Staphylococcus aureus.2004

    • Author(s)
      Sakurai, S.
    • Journal Title

      Microbiol. 150

      Pages: 945-952

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differential geographic patterns of mitochondrial DNA variation in two sympatric species of Japanese wood mice, Apodemus speciosus and A. argenteus.2004

    • Author(s)
      Suzuki, H.
    • Journal Title

      Genes & Genetic Systems 79

      Pages: 165-176

    • NAID

      130000062112

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Synchronic east-west divergence in azure-winged magpies (Cyanopica cyanus) and magpies (Pica pica).2004

    • Author(s)
      Kryukov, A.
    • Journal Title

      Journal of Zoological Systematics and Evolutionary Research 42

      Pages: 342-351

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evolution and biogeography of talpid moles from Continental East Asia and the Japanese Islands inferred from mitochondrial and nuclear gene sequences.2004

    • Author(s)
      Shinohara, A.
    • Journal Title

      Zool. Sci. 21

      Pages: 1177-1185

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Temporal, spatial, and ecological modes of evolution of Eurasian Mus based on mitochondrial and nuclear gene sequences.2004

    • Author(s)
      Suzuki, H.
    • Journal Title

      Mol.Phylogenet.E vol. 33

      Pages: 626-646

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular phylogeny and biogeography of Oriental voles : genus Eothenomys (Muridae, Mammalia).2004

    • Author(s)
      Luo, J.
    • Journal Title

      Mol.Phylogenet.E vol. 33

      Pages: 349-362

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationships and divergence times of the genus Tokudaia within Murinae (Muridae; Rodentia) inferred from the nucleotide sequences encoding the mitochondrial cytochrome b gene and nuclear recombination- activating gene 1 and interphotoreceptor retinoid-binding protein.2004

    • Author(s)
      Sato, J.J.
    • Journal Title

      Canadian Journal of Zoology 82

      Pages: 1343-1351

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differential geographic patterns of mitochondrial DNA variation in two sympatric species of Japanese wood mice, Apodemus speciosus and A. argenteus.2004

    • Author(s)
      Suzuki, H.
    • Journal Title

      Gene & Genetic Systems 79

      Pages: 165-176

    • NAID

      130000062112

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Synchronic east-west divergence in azure- winged magpies (Cyanopica cyanus) and magpies (Pica pica).2004

    • Author(s)
      Kryukov, A.
    • Journal Title

      Journal of Zoological Systematics and Evolutionary Research 42

      Pages: 342-351

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evolution and biogeography of talpid moles from Continental East Asia and the Jananese Islands inferred from mitochondrial and nuclear gene sequences.2004

    • Author(s)
      Akio Shiohara
    • Journal Title

      Zoological Science 21

      Pages: 1177-1185

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Synchronic east-west divergence in azure-winged magpies (Cyanopica cyanus) and magpies (Pica pica).2004

    • Author(s)
      Alexei Kryukov
    • Journal Title

      Journal of Zoological Systematics and Evolutionary Research 42

      Pages: 342-351

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Differential geographic patterns of mitochondrial DNA variation in two sympatric species of Japanese wood mice, Apodemus speciosus and A.argenteus.2004

    • Author(s)
      Hitoshi Suzuki
    • Journal Title

      Gene and Genetic Systemes 79

      Pages: 165-176

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Temporal, spatial, and ecological modes of evolution of Eurasian Mus based on mitochondrial and nuclear gene sequences.2004

    • Author(s)
      Hitoshi Suzuki
    • Journal Title

      Molecular Phylogenetics and Evolution 33

      Pages: 626-646

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Phylogenetic relationships and divergence times of the genus Tokudaia within Murinae (Muridae : Rodentia) inferred from the nucleotide sequences.2004

    • Author(s)
      Jun J.Sato
    • Journal Title

      Canadian Journal of Zoology 82

      Pages: 1343-1351

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Molecular phylogeny and biogeography of Oriental voles : genus Eothenomys (Muridae Mammalia).2004

    • Author(s)
      Jing Luo
    • Journal Title

      Molecular Phylogenetics and Evolution 33

      Pages: 349-362

    • Related Report
      2004 Annual Research Report
  • [Book] 動物地理の自然史(増田隆一、阿部永編) 分担執筆:アジアのネズミ類相の成因に関する時空間要因2005

    • Author(s)
      鈴木 仁
    • Total Pages
      288
    • Publisher
      北海道大学図書刊行会
    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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