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Analysis of the evolutionary history of phytopathogenic fungi of tomato based on gene genealogies

Research Project

Project/Area Number 16405021
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section海外学術
Research Field Plant pathology
Research InstitutionTokyo University of Agriculture and Technology

Principal Investigator

ARIE Tsutomu  Tokyo University of Agriculture and Technology, INSTITUTE OF SYMBIOTICSCIENCEAND TECHNOLOGY, ASSOCIATE PROFESSOR (00211706)

Co-Investigator(Kenkyū-buntansha) TERAOKA Tohru  TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY, INSTITUTE OF SYMBIOTIC SCIENCE AND TECHNOLOGY, PROFESSOR (60163903)
KODAMA Motoichiro  TOTTORI UNIVERSITY, FACULTY OF AGRICULTURE, PROFESSOR (00183343)
Project Period (FY) 2004 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥14,270,000 (Direct Cost: ¥13,100,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2007: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2006: ¥3,900,000 (Direct Cost: ¥3,900,000)
Fiscal Year 2005: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 2004: ¥2,700,000 (Direct Cost: ¥2,700,000)
Keywordsplant / fungi / evolution / plant pathology / symbiosis / pathogenicity / phylogeny / field survey / フィールド / 植物病原菌 / 宿主植物 / 共進化 / トマト / 野生種 / 育種史 / Fusarium / Alternaria
Research Abstract

When and where did plant pathogenic fungi generate pathogenicity?' and 'How has pathogenicity been evolved in plant pathogenic fungi?' are important questions in plant pathology. In order to give evidences to answer these questions, we focused mainly on the coevolution between Lycopersicon spp. (tomatoes) and Fusarium oxysporum, the wilt pathogen of tomato in this study. During the four research years, we visited Ecuador where we could find wild L. pimpinellifolium and L. cheesmanii, Mexico where domestication of tomato occurred more than 2000 years ago and still we can find prototype edible tomato (L. esculentum), L. esculentum vars. ceraciforme and creole, and Naples in Italy where modern breeding of edible tomatostarted in 16th century, collected tissues from symptomless Lycopersicon spp. and rhizosphere soil, and isolated Fusarium oxysporum from the tissues and the soil. All of the isolates showed no pathogenicity on tomatoes by inoculation test and were supposed to be non-pathogenic symbionts. Phylogenetic analysis against the isolates based on rDNA-IGS revealed that non-pathogenic F. oxysporum isolates from wild Lycopersicon spp. carried no phylogenetic relationship with the pathogenic strains (F. oxysporum f. sp. lycopersici). On the other hand, some of the non-pathogenic F. oxysporum isolates from Mexican prototype tomatoes and Italian edible tomatoes showed close relationship between the pathogen. These suggested that the ancient of the present wilt pathogen was the non-pathogenic symbiont which emerged during the domestication of tomato in Mexico. The non-pathogenic E oxysporum have got pathogenicity to tomato during the modern breeding and distribution after 16th century. Now, worldwide trading of tomato fruits and seeds distributes not only the symbiotic non-pathogenic E oxysporum but also F. oxysporum f. sp. lycopersici, the wilt pathogen of tomato.

Report

(5 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (44 results)

All 2008 2007 2006 2005

All Journal Article (26 results) (of which Peer Reviewed: 9 results) Presentation (15 results) Book (2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Biological and phylogenetic characterization of Fusarium oxysporum complex, which causes yellows on Brassica spp., and proposal of F. oxysporum f. sp. rapae, a novel forma specialis pathogenic on B. rapa in Japan2008

    • Author(s)
      Enya J
    • Journal Title

      Phytopathology 98

      Pages: 475-483

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Biological and phylogenetic characterization of Fusarium oxysporum complex, which causes yellows on Brassica spp., and proposal of F. oxysporum f. sp. rapae, a novel forma specialis pathogenic on B. rapa in Japan2008

    • Author(s)
      J, Enya, M, Togawa, T, Takeuchi, S, Yoshida, S, Tsushima, T, Arie, T, Sakai
    • Journal Title

      Phytopathology 98

      Pages: 475-483

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Tomato as a model plant for plant-pathogen interactions2007

    • Author(s)
      Arie T
    • Journal Title

      Plant Biotech 24

      Pages: 135-147

    • NAID

      10021910640

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Genetic diversity of Fusarium oxysporum f. sp. spinaciae in Japan based on phylogenetic analyses of rDNA-IGS and MAT1 sequences2007

    • Author(s)
      Kawabe M
    • Journal Title

      J Gen Plant Pathol 73

      Pages: 353-359

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Tomato as a model plant for plant-pathogen interactions2007

    • Author(s)
      T, Arie, H, Takahashi, M, Kodama, T, Teraoka
    • Journal Title

      Plant Biotech 24

      Pages: 135-147

    • NAID

      10021910640

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Genetic diversity of Fusarium oxysporum f. sp. spinaciae in Japan based on phylogenetic analyses of rDNA-IGS and MAT1 sequences2007

    • Author(s)
      M, Kawabe, K, Katsube, T, Yoshida, T, Arie, K, Tsuchiya
    • Journal Title

      J Gen Plant Pathol 73

      Pages: 353-359

    • NAID

      10027222056

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Tomato as a model plant for plant-pathogen interactions2007

    • Author(s)
      Arie T.et al.
    • Journal Title

      Plant Biotech 24・1

      Pages: 135-147

    • NAID

      10021910640

    • Related Report
      2006 Annual Research Report
  • [Journal Article] PCR-base differentiation of Fusarium oxysporum ff.sp.lycopersici and radicis-lycopersici, and races in F.oxysporum f.sp.lycopersici2007

    • Author(s)
      Hirano, Y. et al.
    • Journal Title

      J.Gen.Plant Pathol. 72(In press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Detoxification of alpha-tomatin by tomato pathogens Alternaria alternata tomato pathotype and Corynespora cassiicola and its role in infection2006

    • Author(s)
      Oka K
    • Journal Title

      J Gen Plant Pathol 72

      Pages: 152-158

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] PCR-based differentiation of Fusarium oxysporum ff. sp. lycopersici and radicis-lycopersici and races of F. oxysporum f. sp. lycopersici2006

    • Author(s)
      Hirano Y
    • Journal Title

      J Gen Plant Pathol 72

      Pages: 273-283

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] 子嚢菌および不完全子嚢菌の交配と交配型遺伝子2006

    • Author(s)
      有江 力
    • Journal Title

      糸状菌分子生物学研究会会報 5

      Pages: 32-33

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Pathological evaluation of host-specific AAL-toxins and fumonisin mycotoxins produced by Alternaria alternata and Fusarium species2006

    • Author(s)
      Yamagishi D
    • Journal Title

      J Gen Plant Pathol 72

      Pages: 323-327

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] G protein signaling mediates development processes and pathogenesis of Alternaria alternata2006

    • Author(s)
      Yamagishi D
    • Journal Title

      Mol Plant-Microbe Interact 19

      Pages: 1280-1288

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] 芝草病原菌のrDNA ITS領域を利用した分子診断マーカーの構築2006

    • Author(s)
      山家愛祈
    • Journal Title

      芝草研究 35

      Pages: 1-14

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Detoxification of alpha-tomatin by tomato pathogens Alternaria alternata tomato pathotype and Corynespora casslicola and its role in infection2006

    • Author(s)
      K, Oka, A, Okubo, M, Komada, H, Otani
    • Journal Title

      J Gen Plant Pathol 72

      Pages: 152-158

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] PCR-based differentiation of Fusarium oxysporum ff. sp. lycopersici and radicis-lycopersici and races of E. oxysporum f. sp. lycopersici2006

    • Author(s)
      Y, Hirano, T, Arie
    • Journal Title

      J Gen Plant Pathol 72

      Pages: 273-283

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Pathological evaluation of host-specific AAL-toxins and fumonisin mycotoxins produced by Alternaria alternata and Fusarium species2006

    • Author(s)
      D, Yamagishi, H, Akamatsu, H, Otani, M, Kodama
    • Journal Title

      J Gen Plant Pathol 72

      Pages: 323-327

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] G protein signaling mediates2006

    • Author(s)
      D, Yamagishi, H, Otani, M, Kodama
    • Journal Title

      development processes and pathogenesis of Alternaria alternata Mol Plant-Microbe Interact 19

      Pages: 1280-1288

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] 芝草病原菌のrDNA ITS領域を利用した分子診断マーカーの構築2006

    • Author(s)
      山家愛祈, ら
    • Journal Title

      芝草研究 35・1

      Pages: 1-14

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Detoxification of a-tomatine by tomato pathogens Aloternaria alternate tomato pathotype and Corynespora cassiicola and its role in infection2006

    • Author(s)
      Oka K.et al.
    • Journal Title

      J. Gen. Plant Pathol. 72・3

      Pages: 152-158

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Pathological evaluation of host-specific AAL-toxins and fumonisin mycotoxins produced by Alternaria and Fusarium species2006

    • Author(s)
      Yamagishi D. et al.
    • Journal Title

      J. Gen. Plant Pathol. 72・5

      Pages: 323-327

    • Related Report
      2006 Annual Research Report
  • [Journal Article] G protein siganaling mediates development processes and pathogenesis of Alternaria alternata2006

    • Author(s)
      Yamagishi D. et al.
    • Journal Title

      Mol. Plant-Microbe Interact. 19・11

      Pages: 1280-1288

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 農薬科学の歴史はまだ浅い.2005

    • Author(s)
      有江 力
    • Journal Title

      日本農薬学会誌 30

      Pages: 303-304

    • NAID

      110001788855

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] 子嚢菌および不完全子嚢菌の交配と交配型遺伝子2005

    • Author(s)
      有江 力ら
    • Journal Title

      第5回糸状菌分子生物学コンファレンス(糸状菌分子生物学研究会会報) 5

      Pages: 32-33

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Three evolutionary lineages of tomato wilt pathogen, Fusarium oxysporum f.sp.lycopersici, based on sequences of IGS, MATl and pgl, are each composed of isolates of a single mating type and a single or closely related vegetative compatibility group2005

    • Author(s)
      Kawabe M.
    • Journal Title

      J.Gen.Plant Pathol. 71(in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 農薬科学の歴史はまだまだ浅い-トマトが野菜になるまでの経緯に学ぶ2005

    • Author(s)
      有江 力
    • Journal Title

      日本農薬学会誌 30(印刷中)

    • Related Report
      2004 Annual Research Report
  • [Presentation] トマト属植物(Lycopersicon spp.)組織および根圏土壌から分離されるFusarium oxysporumの分子系統解析2008

    • Author(s)
      有江 力
    • Organizer
      日本土壌微生物学会2008年度大会
    • Place of Presentation
      静岡市
    • Year and Date
      2008-06-13
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Fusarium oxysporumの交配型遺伝子領域(MAT1)の入換え株の作出2007

    • Author(s)
      有江 力
    • Organizer
      平成19年度日本植物病理学会関東部会
    • Place of Presentation
      厚木市
    • Year and Date
      2007-09-13
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] トマト属植物(Lycopersicon spp.)組織および根圏土壌から分離されるFusarium oxysporumの分子系統解析2007

    • Author(s)
      有江 力
    • Organizer
      第6回フザリム研究会
    • Place of Presentation
      蒲郡市
    • Year and Date
      2007-08-31
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 糸状菌の交配と関連する遺伝子2007

    • Author(s)
      有江 力
    • Organizer
      第28回糸状菌遺伝子研究会
    • Place of Presentation
      北区
    • Year and Date
      2007-06-01
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 糸状菌の交配と関連する遺伝子2007

    • Author(s)
      有江 力
    • Organizer
      第28回糸状菌遺伝子研究会
    • Place of Presentation
      東京都北区
    • Year and Date
      2007-06-01
    • Related Report
      2007 Annual Research Report
  • [Presentation] トマト褐色輪紋病菌および宿主特異的CCT毒素に対するトマト野生種の感受性2007

    • Author(s)
      児玉基一朗
    • Organizer
      平成19年度日本植物病理学会大会
    • Place of Presentation
      宇都宮市
    • Year and Date
      2007-03-29
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] チリ、メキシコ産トマト属植物および根圏土壌から分離されるFusarium oxysporumの系統解析2007

    • Author(s)
      有江 力
    • Organizer
      平成19年度日本植物病理学会大会
    • Place of Presentation
      宇都宮市
    • Year and Date
      2007-03-28
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Fusarium oxysporum f. sp. conglutinansのIGS領域およびMAT1-1の塩基配列に基づいた分子系統解析2007

    • Author(s)
      塩谷純一郎
    • Organizer
      平成19年度日本植物病理学会大会
    • Place of Presentation
      宇都宮市
    • Year and Date
      2007-03-28
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] トマト属植物(Lycopersicon spp.)組織および根圏土壌から分離されるFusarium oxysporumの分子系統解析2007

    • Author(s)
      稲見圭悟
    • Organizer
      第6回フザリウム研究会
    • Place of Presentation
      蒲郡市
    • Related Report
      2007 Annual Research Report
  • [Presentation] A miniature tomato cv. Micro-Tom is an excellent model plant to study plant-pathogen interactions2006

    • Author(s)
      Arie T
    • Organizer
      11th IUPAC International Congress of Pestici de Chemistry
    • Place of Presentation
      Kobe, Japan
    • Year and Date
      2006-08-08
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] miniature tomato cv. Micro-Tom is an excellent model plant to study plant-pathogen interactions2006

    • Author(s)
      M, Kikuchi, S, Fukushima, R, Ishikawa, H, Takahashi, T, Teraoka, T, Arie
    • Organizer
      11th IUPAC International Congress of A Pesticide Chemistry
    • Place of Presentation
      Kobe
    • Year and Date
      2006-08-08
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Alternaria alternataに内在する2本鎖RNAが宿主に与える影響2006

    • Author(s)
      森山裕充
    • Organizer
      平成18年度日本植物病理学会大会
    • Place of Presentation
      札幌市
    • Year and Date
      2006-06-05
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Tomato as a model plant for plant-pathogen interactions2006

    • Author(s)
      Arie T
    • Organizer
      International Symposium on Tomato Genome Research in Tsukuba
    • Place of Presentation
      つくば市
    • Year and Date
      2006-02-05
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] チリ産トマト属野生種から分離した非病原性Fusarium oxysporumの分子系統解析2005

    • Author(s)
      有江 力
    • Organizer
      第5回糸状菌分子生物学コンファレンス
    • Place of Presentation
      文京区
    • Year and Date
      2005-11-08
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Tomato as a model plant for plant-pathogen interactions2005

    • Author(s)
      T, Arie, H, Takahashi, M, Kodama, T, Teraoka
    • Organizer
      International Symposium on Tomato Genome Research in Tsukuba
    • Place of Presentation
      Tsukuba
    • Year and Date
      2005-02-05
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 植物病原アトラス2007

    • Author(s)
      米山勝美
    • Total Pages
      262
    • Publisher
      ソフトサイエンス社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Book] 植物病原アトラス2006

    • Author(s)
      米山勝美ら編(分担執筆)
    • Total Pages
      261
    • Publisher
      ソフトサイエンス社
    • Related Report
      2005 Annual Research Report
  • [Patent(Industrial Property Rights)] 特許権2007

    • Inventor(s)
      有江 力, 他
    • Industrial Property Rights Holder
      東京農工大学
    • Industrial Property Number
      2007-273264
    • Filing Date
      2007-10-21
    • Related Report
      2007 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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