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Comprehensive analysis of redox regulations of plant by the disulfide proteome.

Research Project

Project/Area Number 16510151
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionNational Agriculture and Food Research Organization

Principal Investigator

YANO Hiroyuki  National Institute of Crop Science, Rice Quality Research Team, Senior Researcher, 作物研究所・米品質研究チーム, 主任研究員 (20355580)

Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2006: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2005: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2004: ¥1,300,000 (Direct Cost: ¥1,300,000)
KeywordsRedox / Thioredoxin / Disulfide / Rice / Germination / Proteome / ジスルフィドプロテオーム / アレルゲン
Research Abstract

Redox regulation in biology is as important as regulation by phosphorylation / de-phosphorylation. The head investigator of this project recently developed the disulfide proteome technique that allows comprehensive analysis of redox regulation of proteins. This study was aimed to apply the technique to clarify new redox regulations in rice seed germination.
First, proteins were extracted from aleurone layer of rice seeds. When NADPH and NADPH-dependent thioredoxin reductase (NTR) were added to the extract, embryo-specific protein (ESP)-2 disappeared. On the other hand, when the experiment was done in the presence of leupeptine, a cysteine-protease inhibitor, degradation of ESP2 did not occur. These results suggested that the endogenous thioredoxin in the aleurone layer activated a cystein protease that digested ESP2. The ESP2 has a high disulfide content (l6S-S/392aa). So thioredoxin seemed to reduce the disulfide bonds to unfold the molecular structure of ESP2. Next, when isolated aleurone layer was incubated in the presence of gibberellic acid and CaCl_2, similar results were obtained as the previous in vitro studies. So, in rice seed germination, endogenous thioredoxin likely activates cysteine protease and concurrently unfolds its substrate, ESP2, to facilitate prompt degradation. It has been reported that a serine-protease, thiocalsin, that digests globulins is synthesized de novo and activated thioredoxhvdependently in the presence of Ca^<2+> in the later stage of seed germination. In our in vivo study, globulins remained intact when ESP2 was digested by the cystein protease. These observations suggest that in seed germination, thioredoxin activates different proteases step by step, and concurrently unfolds the substrate of the respective protease to facilitate degradation. Thus new redox regulation was clarified in the present study.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (22 results)

All 2006 2005 2004

All Journal Article (21 results) Book (1 results)

  • [Journal Article] Disulfide proteome yields a detailed understanding of redox regulation : a model study of thioredoxin-linked reactions in seed germination.2006

    • Author(s)
      Yano H, Kuroda M
    • Journal Title

      Proteomics 6・1

      Pages: 294-300

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Update and challenges on proteomics in rice.2006

    • Author(s)
      Komatsu S, Yano H
    • Journal Title

      Proteomics 6・14

      Pages: 4057-4068

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] 新しい網羅的タンパク質解析手法の開発とアレルゲン検出技術への応用2006

    • Author(s)
      矢野裕之
    • Journal Title

      農林水産研究ジャーナル 29・6

      Pages: 53-56

    • NAID

      10016974388

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] これからのイネ研究-低アレルゲン化への取り組み-2006

    • Author(s)
      矢野裕之, 黒田秧
    • Journal Title

      農業および園芸 81・1

      Pages: 203-206

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Disulfide proteome yields a detailed understanding of redox regulation : a model study of thioredoxin-linked reactions in seed germination.2006

    • Author(s)
      Yano H, Kuroda M
    • Journal Title

      Proteomics 6-1

      Pages: 294-300

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Update and challenges on proteomics in rice.2006

    • Author(s)
      Komatsu S, Yano H
    • Journal Title

      Proteomics 6-14

      Pages: 4057-4068

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Development of a proteome technique and its application in detecting allergens.2006

    • Author(s)
      Yano H
    • Journal Title

      Research Journal of Food and Agriculture 29-6

      Pages: 53-56

    • NAID

      10016974388

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Trial to alleviate allergens.2006

    • Author(s)
      Yano H, Kuroda S
    • Journal Title

      Agriculture and Horticulture 81-1

      Pages: 203-206

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Update and challenges on proteomics in rice.2006

    • Author(s)
      Setsuko Komatsu, Hiroyuki Yano
    • Journal Title

      Proteomics 6(14)

      Pages: 4057-4068

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 新しい網羅的タンパク質解析手法の開発とアレルゲン検出技術への応用2006

    • Author(s)
      矢野裕之
    • Journal Title

      研究ジャーナル 29(6)

      Pages: 53-56

    • NAID

      10016974388

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Disulfide proteome yields a detailed understanding of redox regulations : a model study of thioredoxin-linked reactions in seed germination.2006

    • Author(s)
      矢野 裕之
    • Journal Title

      Proteomics 6(1)

      Pages: 294-300

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 食物アレルギー研究の動向2005

    • Author(s)
      島田純子, 矢野裕之, 水町功子
    • Journal Title

      科学技術動向 47

      Pages: 9-16

    • NAID

      120006589525

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] レドックス制御を包括的に解析できるジスルフィドプロテオーム-ポストゲノム研究の有効なツール : 原理と応用-2005

    • Author(s)
      矢野裕之, 黒田秧
    • Journal Title

      ブレインテクノニュース 111

      Pages: 23-36

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Trends in food allergy research.2005

    • Author(s)
      Shimada J, Yano H, Mizumachi K
    • Journal Title

      Science and Technology Trends 47

      Pages: 9-16

    • NAID

      120006590555

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Disulfide proteome that allows comprehensive analysis of redox regulations-Effective tool for the post-genome researches : its principle and applications-2005

    • Author(s)
      Yano H, Kuroda S
    • Journal Title

      BRAIN Techno News 111

      Pages: 23-36

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The disulfide proteome of plants.2005

    • Author(s)
      Yano H, Balmer Y, Kuroda S, Buchanan BB
    • Journal Title

      Trends in protein research, Nova Science Publishers

      Pages: 183-199

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] レドックス制御を包括的に解析できるジスルフィドプロテオーム-ポストゲノム研究の有効なツール:原理と応用-2005

    • Author(s)
      矢野 裕之
    • Journal Title

      BRAIN 111

      Pages: 23-26

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The disulfide proteome of plants2005

    • Author(s)
      矢野 裕之
    • Journal Title

      Trends in protein research(Nova Science Publishers)

      Pages: 183-199

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 「ジスルフィドプロテオーム」によるレドックス蛋白質の機能解析2004

    • Author(s)
      矢野裕之, 田中宥司, 黒田秧
    • Journal Title

      化学と生物 42・9

      Pages: 585-590

    • NAID

      10016519721

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Functional analysis of redox proteins by disulfide proteome.2004

    • Author(s)
      Yano H, Tanaka H, Kuroda S
    • Journal Title

      Chemistry and Biology 42-9

      Pages: 585-590

    • NAID

      10016519721

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] 「ジスルフィドプロテオーム」によるレドックス蛋白質の機能解析2004

    • Author(s)
      矢野, 裕之
    • Journal Title

      化学と生物 42

      Pages: 585-590

    • NAID

      10016519721

    • Related Report
      2004 Annual Research Report
  • [Book] Trends in protein research (Chapter The disulfide proteome of plants.)2005

    • Author(s)
      Yano H, Balmer Y, Kuroda S, Buchanan BB
    • Publisher
      Nova Science Publishers, New York, USA
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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