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Analyses of acidophilic bacterial communities and environmental changes using microcosms

Research Project

Project/Area Number 16570008
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Ecology/Environment
Research InstitutionTohoku University

Principal Investigator

SHIKANO Shuichi  Tohoku University, Center for Northeast Asian Studies, Associate Professor, 東北アジア研究センター, 助教授 (70154185)

Co-Investigator(Kenkyū-buntansha) KIKUCHI Eisuke  Tohoku University, Center for Northeast Asian Studies, Professor, 東北アジア研究センター, 教授 (00004482)
Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 2005: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2004: ¥2,300,000 (Direct Cost: ¥2,300,000)
Keywordsacidophilic bacteria community / microcosm / acidic lake / Lake Katanuma / stratification and circulation / hydrogen sulfide / FISH method / DGGE method
Research Abstract

1.The Lake Katanuma, a strongly acid lake, was surveyed during April 2004 to December 2006. The thermal pattern in the lake water showed dimictic. During the stratification period from April to August, oxic water with no hydrogen sulfide was detected in the epilimnion, whereas oxygen depletion and accumulated hydrogen sulfide were prominent in the hypolimnion. Oxic conditions and no hydrogen sulfide were observed in the entire water column during the autumn circulation period.
2.Two genus specific oligonucleotide probes were used with fluorescent in situ hybridization (FISH) to measure the biomasses of the genera Acidiphilium and Acidithiobacillus, respectively. The genus Acidiphilium dominated the bacteria community at the stratification period, while both genera dominated at the circulation period.
3.We made the microcosms from the lake water of the stratification and circulation periods, respectively. These microcosms were cultured under the following conditions ; 1)dark condition, 2) … More low temperature, 3)low dissolved oxygen, 4)ferrous addition, 5)glucose addition, 6)thiosulfate addition, and 7)control. FISH analysis indicated that the increased abundant of Acidithiobacillus and the decrease of Acidiphilium were observed after 1 week in the microcosms treated with the thiosulfate addition and low temperature. In the microcosms of the other conditions, the biomasses of two genera have not changed.
4.Denaturing gradient gel electrophoresis (DGGE) analysis of the microbial community in the microcosms revealed that the genus Acidithiobacillus was consisting of two species, At.caldus and At.albertensis and the genus Acidiphilium was mainly composed of A.acidophilum. Other bacteria genera were not detected by DGGE. Although Acidiphilium species are considered the major representatives of the acidic environments such as the Lake Katanuma, the genus Acidithiobacillus could proliferate under the conditions of sulfide supply or low water temperature during autumn circulation period. Less

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (20 results)

All 2006 2005 2004 Other

All Journal Article (20 results)

  • [Journal Article] Selective assimilation by deposit feeders : experimental evidence using stable isotope ratios.2006

    • Author(s)
      Doi H.
    • Journal Title

      Basic and Applied Ecology 7

      Pages: 159-166

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The influence of paddy soil drying on Tc insolubilization by bacteria.2006

    • Author(s)
      Wakae N.
    • Journal Title

      Chemosphere (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Selective assimilation by deposit feeders : experimental evidence using stable isotope ratios.2006

    • Author(s)
      Doi H, Kikuchi E, Takagi S, Shikano S
    • Journal Title

      Basic and Applied Ecology 7

      Pages: 159-166

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The influence of paddy soil drying on Tc insolubilization by bacteria.2006

    • Author(s)
      Wakae N, Ishii N, Shikano S. Uchida S.
    • Journal Title

      Chemosphere (In press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Carbon stable isotope ratios of phytoplankton and benthic diatoms in Lake Katanuma with reference to those of other lakes.2005

    • Author(s)
      Doi H.
    • Journal Title

      Korean Journal of Limnology 8(special issue)

      Pages: 8-11

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Swimming behaviour of Chironomus acerbiphilus larvae in Lake Katanuma.2005

    • Author(s)
      Takagi S.
    • Journal Title

      Hydrobiologia 548

      Pages: 153-165

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Interannual variations of limnological and ecological characteristics in acidic Lake Katanuma.2005

    • Author(s)
      Shikano S.
    • Journal Title

      Korean Journal of Limnology 38(4)

      Pages: 435-438

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Carbon stable isotope ratios of phytoplankton and benthic diatoms in Lake Katanuma with reference to those of other lakes.2005

    • Author(s)
      Doi H.
    • Journal Title

      Korean Journal of Limnology 38

      Pages: 8-11

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Interannual variations of limnological and ecological characteristics in acidic Lake Katanuma.2005

    • Author(s)
      Shikano S.
    • Journal Title

      Korean Journal of Limnology 38

      Pages: 435-438

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Carbon stable isotope ratios of phytoplankton and benthic diatoms in Lake Katanuma with reference to those of other lakes.2005

    • Author(s)
      Doi H, Kikuchi E, Takagi S, Shikano S.
    • Journal Title

      Korean Journal of Limnology 38

      Pages: 8-11

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Swimming behaviour of Chironomus acerbiphilus larvae in Lake Katanuma.2005

    • Author(s)
      Takagi S, Kikuchi E, Doi H, Shikano S.
    • Journal Title

      Hydrobiologia 548

      Pages: 153-165

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Interannual variations of limnological and ecological characteristics in acidic Lake Katanuma.2005

    • Author(s)
      Shikano S, Kikuchi E, Takagi S, Doi H.
    • Journal Title

      Korean Journal of Limnology 38

      Pages: 435-438

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Interannual variations of limnological and ecological characteristics in acidic Lake Katanuma2005

    • Author(s)
      Shikano S, Kikuchi E, Takagi S, Doi H.
    • Journal Title

      Korean Journal of Limnology (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A study of the nitrogen stable isotope dynamics of phytoplankton in a simple natural ecosystem.2004

    • Author(s)
      Doi H.
    • Journal Title

      Aquatic Microbial Ecology 36

      Pages: 285-291

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Volcanic heat flux and short-term holomixis during the summer stratification period in a crater lake.2004

    • Author(s)
      Shikano S.
    • Journal Title

      Limnology and Oceanography 49(6)

      Pages: 2287-2292

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Volcanic heat flux and short-term holomixis during the summer stratification period in a crater lake.2004

    • Author(s)
      Shikano S.
    • Journal Title

      Limnology and Oceanography 49

      Pages: 2287-2292

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Volcanic heat flux and short-term holomixis during the summer stratification period in a crater lake2004

    • Author(s)
      Shikano S, Kikuchi E, Takagi S, Doi H.
    • Journal Title

      Limnology and Oceanography 49(6)

      Pages: 2287-2292

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A study of the nitrogen stable isotope dynamics of phytoplankton in a simple natural ecosystem2004

    • Author(s)
      Doi H, Kikuchi E, Shikano S, Takagi S.
    • Journal Title

      Aquatic Microbial Ecology 36

      Pages: 285-291

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Seasonal changes of carbon and nitrogen stable isotope ratios for dominant2004

    • Author(s)
      Doi H, Kikuchi E, Takagi S, Shikano S.
    • Journal Title

      Rep.Res.Edu.Ctr.Inlandwat.Environ. 2

      Pages: 25-28

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The influence of paddy soil drying on Tc insolubilization by bacteria.

    • Author(s)
      Wakae N.
    • Journal Title

      Chemosphere (In press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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