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Molecular genetic and genomic analysis of transcriptional response to high light stress

Research Project

Project/Area Number 16570046
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 植物生理・分子
Research InstitutionThe Institute for Physical and Chemical Research (RIKEN)

Principal Investigator

YAMAMOTO Yoshiharu  RIKEN, Acceleration Development Group, Research Associate, 加速器利用展開グループ, 加速器研究員 (50301784)

Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥3,200,000 (Direct Cost: ¥3,200,000)
Fiscal Year 2005: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2004: ¥2,100,000 (Direct Cost: ¥2,100,000)
Keywordsenvironmental response / photosynthesis / chloroplast / gene expression / light stress / Arabidopsis / microarray / luciferase / アイクロアレイ
Research Abstract

Response to high light, drought, and reactive oxygen was analyzed using microarray, and genes under specific regulation by high light were identified. I have prepared promoter database of Arabidopsis, and with the aid of it, I tried to identify cis regulatory elements for high light-specific gene activation. Firstly, I extracted overrepresented elements among the high light-activated promoter group compared with whole Arabidopsis promoters. Some of these cis candidates were found in the ELIP2 promoter, which gives strong high light response when fused to the luciferase reporter in transgenic Arabidopsis. Together with some other analyses, i could identify two putative high light responsive elements.
A line of transgenic Arabidopsis that shows transcriptional response to light stress as activation of luciferase activity was used for screening mutants with altered high light response. Several isolated mutants were subjected to physiological analyses in order to classification of the mutants. These analyses revealed that there are two types of mutants, mutants with the disturbed signal transduction and ones with disordered photosynthetic apparatus.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (27 results)

All 2006 2005 2004 Other

All Journal Article (24 results) Book (3 results)

  • [Journal Article] In situ visible markers of Arabidopsis for radiation biology2006

    • Author(s)
      Yamamoto YY, Saito M, Yoshida S, Abe T
    • Journal Title

      RIKEN Accel Prog Rep 39

      Pages: 135-135

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] In situ visible markers of Arabidopsis for radiation biology2006

    • Author(s)
      Yamamoto YY, Saito M, Yoshida S, Abe T
    • Journal Title

      RIKEN Accel PRog Rep 39

      Pages: 135-135

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] In situ visible markers of Arabidopsis for radiation biology.2006

    • Author(s)
      Yamamoto YY, Saito M, Yoshida S, Abe T
    • Journal Title

      RIKEN Accel Prog Rep (In press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Establishment of Arabidopsis thaliana lines mutagenized with heavy ion beam irradiation.2005

    • Author(s)
      Yamamoto YY et al.
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 131-131

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Biological effects of heavy ion beam irradiation on turfgrass.2005

    • Author(s)
      Watanabe K, Suzuki C, Yamamoto YY, Abe T, Yoshida S, Yoneyama K
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 133-133

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Chlorophyll-deficient mutants of rice induced by C-ion irradiation2005

    • Author(s)
      Abe T et al.
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 132-132

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Effect of heavy-ion beam irradiation on mutation induction in Arabidopsis thaliana(II)2005

    • Author(s)
      Saito H et al.
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 130-130

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Chlorophyll-deficient mutants of rice induced by C-ion irradiation2005

    • Author(s)
      Abe T, Hayashi Y, Saito H, Takehisa H, Miyazawa Y, Yamamoto YY, Ryuto H, Fukunishi N, Sato M, Yoshida S, Kameya T
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 132-132

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Effect of heavy-ion beam irradiation on mutation induction in Arabidopsis thaliana (II)2005

    • Author(s)
      Saito H, Yamamoto YY, Matsuyama T, Fukunishi N, Ryuto H, Abe T, Yoshida S
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 130-130

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Biological effects of heavy ion beam irradiation on turfgrass2005

    • Author(s)
      Watanabe K, Suzuki C, Yamamoto YY, Abe T, Yoshida S, Yoneyama K
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 133-133

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Establishment of Arabidopsis thaliana lines mutagenized with heavy ion beam irradiation2005

    • Author(s)
      Yamamoto YY, Saito H, Ryuto H, Fukunishi N, Abe T, Yoshida S
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 131-131

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Establishment of Arabidopsis thaliana lines mutagenized with heavy ion beam irradiation.2005

    • Author(s)
      Yamamoto YY, Saito H, Ryuto H, Fukunishi N, Abe T, Yoshida S
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 131-131

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Effect of heavy-ion beam irradiation on mutation induction in Arabidopsis thaliana (II)2005

    • Author(s)
      Saito H et al.
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 130-130

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Chlorophyll-deficient mutants of rice induced by C-ion irradiation.2005

    • Author(s)
      Abe T et al.
    • Journal Title

      RIKEN Accel Prog Rep 38

      Pages: 132-132

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Global classification of transcriptional responses to light stress in Arabidopsis thaliana2004

    • Author(s)
      Yamamoto YY et al.
    • Journal Title

      Endocytobiosis Cell Res 15

      Pages: 438-452

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary 2004 Annual Research Report
  • [Journal Article] Characterization of plastid signaling in Arabidopsis with the aid of light stress response2004

    • Author(s)
      Kimura M, Manabe K, Matsui M, Yamamoto YY
    • Journal Title

      Endocytobiosis Cell Res 15

      Pages: 345-349

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Effect of heavy-ion beam irradiation on mutation induction in Arabidopsis thaliana2004

    • Author(s)
      Saito H, Matsuyama T, Yamamoto YY, Abe T, Yoshida S
    • Journal Title

      RIKEN Accel Prog Rep 37

      Pages: 147-147

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Isolation of light stress response mutants of Arabidopsis thaliana with the aid of heavy ion beam irradiation2004

    • Author(s)
      Yamamoto YY, Abe T, Yoshida S
    • Journal Title

      RIKEN Accel Prog Rep 37

      Pages: 148-148

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Global classification of transcriptional responses to light stress in Arabidopsis thaliana2004

    • Author(s)
      Yamamoto YY, Shimada Y, Kimura M, Manabe K, Sekine Y, Matsui M, Ryuto H, Fukunishi N, Abe T, Yoshida S
    • Journal Title

      Endocytobiosis Cell Res 15

      Pages: 438-452

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Characterization of plastid signaling in Arabidopsis with the aid of light stress response2004

    • Author(s)
      Kimura M et al.
    • Journal Title

      Endocytobiosis Cell Res 15

      Pages: 345-349

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Effect of heavy-ion beam irradiation on mutation induction in Arabidopsis thaliana2004

    • Author(s)
      Saito H et al.
    • Journal Title

      RIKEN Accel Prog Rep 37

      Pages: 147-147

    • Related Report
      2004 Annual Research Report
  • [Journal Article] solation of light stress response mutants of Arabidopsis thaliana with the aid of heavy ion beam irradiation2004

    • Author(s)
      Yamamoto YY et al.
    • Journal Title

      RIKEN Accel Prog Rep 37

      Pages: 148-148

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Development of plant mutation breeding using heavy ion

    • Author(s)
      Abe T, Miyazawa Y, Saito H, Yamamoto YY, Ryuto H, Fukunishi N
    • Journal Title

      Proceedings of Second Workshop on Biological Application of Ion Beam (Japan Atomic Energy Research Institute, Takasaki)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Creation of Arabidopsis mutants showing defect in light stress response with the aid of ion beam and EMS

    • Author(s)
      Yamamoto YY
    • Journal Title

      Database of Radiation Utilization Technology at Radiation Application Development Association (http://www.rada.or.jp, in preparation for data publication)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] 重イオンを用いた植物突然変異育種の開発2004

    • Author(s)
      阿部知子他
    • Publisher
      日本原子力研究所
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] イオンビームとEMSを用いたシロイヌナズナ強光応答変異体の作出

    • Author(s)
      山本義治
    • Publisher
      放射線利用技術試験研究データペース(放射線利用振興協会)(公開)
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] イオンビームとEMSを用いたシロイヌナズナ強光応答変異体の作出

    • Author(s)
      山本義治
    • Publisher
      放射線利用技術試験研究データベース(放射線利用振興協会)(公開準備中)
    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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