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Molecular phylogeny of Rattus species and their temporal, spatial, and ecological modes of evolution

Research Project

Project/Area Number 16570071
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biodiversity/Systematics
Research InstitutionHOKKAIDO UNIVERSITY

Principal Investigator

SUZUKI Hitoshi  Hokkaido Univ., Fac. of Environm. Earth Sci., Asso. Prof., 大学院地球環境科学研究院, 助教授 (40179239)

Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 2006: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 2005: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2004: ¥900,000 (Direct Cost: ¥900,000)
Keywordsbiogeography / phylogeography / nuclear gene marker / karyotype / hybridization / introduced animals / black rat / gene diversity
Research Abstract

Our analyses included more than 100 individuals in 63 recognized species from 19 genera, including all but six genera of the Rattus sensu lato. The major findings of our work include: 1) confirmation of a three way division of Rattus sensu lato into 'Maxomys',Niviventer' and 'Rattus' groups; 2) previously unsuspected association of the specialized arboreal genus Margaretamys of Sulawesi with the Niviventer group; 3) demonstration that the genus Rattus as currently defined is polyphyletic with at least three recognizable lineages: i) Rattus sensu stricto, which includes both R. norvegicus and R. rattus, along with many other species of particular interest; ii) 'Rattus' everetti of the Philippines; and iii) members of the 'Rattus' xanthurus' group together with the native 'Rattus' of Australia and New Guinea; 4) demonstration that the black rat group, Rattus rattus sensu lato contains multiple lineages, two of which are shown to be genetically and cyctologically distinct in Japan but with evidence of introgression in several areas with contrasting outcomes. From a biogeographic perspective, the most interesting findings of this study are the demonstration that members of Rattus sensu lato succeeded in colonizing the oceanic landmasses off the margins of the Sunda Shelf on multiple occasions. All major groups within Rattus sensu lato managed to reach Sulawesi, the Philippine islands and the Mentawai islands to the south of Sumatra, but only one lineage within the 'Rattus group' succeeded in going beyond these major islands to eventually colonize New Guinea and Australia in the east, and to reach the remote islands of the Ryukyu Archipelago in the north.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (42 results)

All 2006 2005 2004

All Journal Article (41 results) Book (1 results)

  • [Journal Article] Phylogeographic origin of Hokkaido house mice (Mus musculus) as indicated by genetic markers with maternal, paternal and biparental inheritance.2006

    • Author(s)
      Terashima, M.
    • Journal Title

      Heredity 96

      Pages: 128-138

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Annual Research Report 2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationships within parrots (psittacidae) inferred from mitochondrial cytochrome-b gene sequences.2006

    • Author(s)
      Astuti D.
    • Journal Title

      Zool. Sci. 23

      Pages: 191-198

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of pinnipedia : single origin with affinity to musteloidea.2006

    • Author(s)
      Sato JJ
    • Journal Title

      Zool. Sci. 23

      Pages: 125-146

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differentiation in the lesser Japanese mole in Eastern Honshu, Japan, indicated by nuclear and mitochondrial Gene.2006

    • Author(s)
      Masahiro A. Iwasa
    • Journal Title

      Zool. Sci. 23

      Pages: 955-961

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationships within parrots (psittacidae) inferred from mitochondrial cytochrome-b gene sequences.2006

    • Author(s)
      Astuti D.
    • Journal Title

      Zool Sci. 23

      Pages: 191-198

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of pinnipedia : single origin with affinity to musteloidea.2006

    • Author(s)
      Sato JJ.
    • Journal Title

      Zool Sci. 23

      Pages: 125-146

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differentiation in the lesser Japanese mole in Eastern Honshu, Japan, indicated by nuclear and mitochondrial Gene.2006

    • Author(s)
      Masahiro A.Iwasa
    • Journal Title

      Zool. Sci. 23

      Pages: 955-961

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of Pinnipedia : Single origin with affinity to Musteloidea.2006

    • Author(s)
      Jun J. Sato
    • Journal Title

      Zoological Science 23

      Pages: 125-146

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Molecular evolution and phylogeography of West-Palaearctic wood mices of the genus Sylvaemus based on the data on variation of nuclear (IRBP) and mitochondrial (Cyt B) DNA genes.2006

    • Author(s)
      Chelomina G.N.
    • Journal Title

      ZOOLOGICHESKY ZHURNAL 85

      Pages: 219-234

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Phylogenetic Relationships Within Parrots (Psittacidae) Inferred from Mitochondrial Cytochrome-b Gene Sequences.2006

    • Author(s)
      Dwi Astuti
    • Journal Title

      ZOOLOGICAL SCIENCE 23

      Pages: 191-198

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 小樽産クマネズミの系統地理学的解析2006

    • Author(s)
      アレハンドロ アルド チネン
    • Journal Title

      ANIMATE 特別号1

      Pages: 61-64

    • Related Report
      2006 Annual Research Report
  • [Journal Article] ネズミ類にみる生物の進化と外来種問題2006

    • Author(s)
      鈴木 仁
    • Journal Title

      エコソフィア 17

      Pages: 36-40

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Phylogeographic origin of Hokkaido house mice (Mus musculus) as indicated by maternal, paternal and biparental inheritance molecules2006

    • Author(s)
      Terashima, Mie
    • Journal Title

      Heredity 96

      Pages: 128-138

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Independent nonframeshift deletions in the MC1R gene are not associated with melanistic coat coloration in three mustelid lineages.2005

    • Author(s)
      Hosoda, T.
    • Journal Title

      Journal of Heredity 96

      Pages: 607-613

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogeographic patterning of mtDNA in the widely distributed harvest mouse Micromys minutus suggests dramatic cycles of range contraction and expansion during the mid- to late Pleistocene.2005

    • Author(s)
      Yasuda, S. P.
    • Journal Title

      Canadian Journal of Zoology 83

      Pages: 1411-1420

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Preliminary genetic characterization of two lineages of black rats (Rattus rattus sensu lato) in Japan, with evidence for introgression at several localities.2005

    • Author(s)
      Chinen, A. A.
    • Journal Title

      Genes & Genetic Systems 80

      Pages: 367-375

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] An evolutionary view on the Japanese talpids based on nucleotide sequences.2005

    • Author(s)
      Shinohara, A.
    • Journal Title

      Mammal Study (supplement) 30

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Restriction fragment length polymorphism of nuclear rDNA in Sorex caecutiens/shinto group (Eulipotyphla, Soricidae).2005

    • Author(s)
      Yukako Naitoh
    • Journal Title

      Mammal Study 30

      Pages: 101-107

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogeographic patterning of mtDNA in the widely distributed harvest mouse Micromys minutus suggests dramatic cycles of range contraction and expansion during the mid-to late Pleistocene.2005

    • Author(s)
      Yasuda, S. P.
    • Journal Title

      Canadian Journal of Zoology 83

      Pages: 1411-1420

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] An evolutionary view on the Japanese talpids based on nucleotide sequences.2005

    • Author(s)
      Shinohara, A.
    • Journal Title

      Mammal Study 30(supplement)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Independent nonframeshift deletions in the MC1R gene are not associated with melanistic coat coloration in three mustelid lineages2005

    • Author(s)
      Hosoda, Tetsuji
    • Journal Title

      Journal of Heredity 96

      Pages: 607-613

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Restriction fragment length polymorphism of nuclear rDNA in Sorex caecutiens/shinto group (Eulipotypha, Soricidae)2005

    • Author(s)
      Naitoh, Yoko
    • Journal Title

      Mammal Study 30

      Pages: 101-108

    • Related Report
      2005 Annual Research Report
  • [Journal Article] An evolutionary view on the Japanese talpids based on nucleotide sequences2005

    • Author(s)
      Shinohara, Akio
    • Journal Title

      Mammal Study 30(supplement)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 野生哺乳類、特にネズミ類の遺伝学2005

    • Author(s)
      鈴木 仁
    • Journal Title

      動物遺伝育種研究 33

      Pages: 39-46

    • NAID

      10016876059

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Phylogeographic patterning of mtDNA in the widely distributed harvest mouse Micromys minutus suggests dramatic cycles of range contraction and expansion during the mid- to late Pleistocene.2005

    • Author(s)
      Yasuda, Shumpei P
    • Journal Title

      Canadian Journal of Zoology 83

      Pages: 1411-1420

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Temporal, spatial, and ecological modes of evolution of Eurasian Musbased on mitochondrial and nuclear gene sequences.2004

    • Author(s)
      Suzuki, H
    • Journal Title

      Mol. Phylogenet. Evol. 33

      Pages: 626-646

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular phylogeny and biogeography of Oriental voles : genus Eothenomys (Muridae, Mammalia).2004

    • Author(s)
      Luo, J.
    • Journal Title

      Mol. Phylogenet. Evol. 33

      Pages: 349-362

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationships and divergence times of the genus Tokudaia within Murinae (Muridae; Rodentia) inferred from the nucleotide sequences encoding the mitochondrial cytochrome b gene and nuclear recombination-activating gene 1 and interphotoreceptor retinoid-binding protein.2004

    • Author(s)
      Sato, J. J.
    • Journal Title

      Canadian Journal of Zoology 82

      Pages: 1343-1351

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differential geographic patterns of mitochondrial DNA variation in two sympatric species of Japanese wood mice, Apodemus speciosus and A. argenteus.2004

    • Author(s)
      Suzuki, H.
    • Journal Title

      Geves & Genetic Systems 79

      Pages: 165-176

    • NAID

      130000062112

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Synchronic east-west divergence in azure-winged magpies (Cyanopica cyanus) and magpies (Pica pica).2004

    • Author(s)
      Kryukov, A.
    • Journal Title

      Journal of Zoological Systematics and Evolutionary Research 42

      Pages: 342-351

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evolution and biogeography of talpid moles from Continental East Asia and the Japanese Islands inferred from mitochondrial and nuclear gene sequences.2004

    • Author(s)
      Shinohara, A.
    • Journal Title

      Zool. Sci. 21

      Pages: 1177-1185

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Temporal, spatial, and ecological modes of evolution of Eurasian Mus based on mitochondrial and nuclear gene sequences.2004

    • Author(s)
      Suzuki, H.
    • Journal Title

      Mol. Phylogenet. Evol. 33

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Phylogenetic relationships and divergence times of the genus Tokudaia within Murinae (Muridae; Rodentia) inferred from the nucleotide sequences encoding the mitochondrial cytochrome b gene and nuclear recombination- activating gene 1 and interphotoreceptor retinoid-binding protein.2004

    • Author(s)
      Sato, J. J.
    • Journal Title

      Canadian Journal of Zoology 82

      Pages: 1343-1351

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Differential geographic patterns of mitochondrial DNA variation in two sympatric species of Japanese wood mice, Apodemus speciosus and A. argenteus.2004

    • Author(s)
      Suzuki, H.
    • Journal Title

      Gene & Genetic Systems 79

      Pages: 165-176

    • NAID

      130000062112

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Synchronic east-west divergence in azure- winged magpies (Cyanopica cyanus) and magpies (Pica pica).2004

    • Author(s)
      Kryukov, A.
    • Journal Title

      Journal of Zoological Systematics and Evolutionary Research 42

      Pages: 342-351

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Evolution and biogeography of talpid moles from Continental East Asia and the Japanese Islands inferred from mitochondrial and nuclear gene sequences2004

    • Author(s)
      Akio Shiohara
    • Journal Title

      Zoological Science 21

      Pages: 1177-1185

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Synchronic east-west divergence in azure-winged magpies (Cyanopica cyanuts) and magpies (Pica pica).2004

    • Author(s)
      Alexei Kryukov
    • Journal Title

      Journal of Zoological Systematics and Evolutionary Research 42

      Pages: 342-351

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Differential geographic patterns of mitochondrial DNA variation in two sympatric species of Japanese wood mice. Apodemus speciosus and A.argenteus.2004

    • Author(s)
      Hitoshi Suzuki
    • Journal Title

      Gene and Genetic Systemes 79

      Pages: 165-176

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Temporal, spatial, and ecological modes of evolution of Eurasian Mus based on mitochondrial and nuclear gene sequences.2004

    • Author(s)
      Hitoshi Suzuki
    • Journal Title

      Molecular Phylogenetics and Evolution 33

      Pages: 626-646

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Phylogenetic relationships and divergence times of the genus Tokudaia within Murinae (Muridae : Rodentia) inferred from the nucleotide sequences.2004

    • Author(s)
      Jun J.Sato
    • Journal Title

      Canadian Journal of Zoology 82

      Pages: 1343-1351

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Molecular phylogeny and biogeography of Oriental voles : genus Eothenomys (Muridae, Mammalia).2004

    • Author(s)
      Jing Luo
    • Journal Title

      Molecular Phylogenetics and Evolution 33

      Pages: 349-362

    • Related Report
      2004 Annual Research Report
  • [Book] 動物地理の自然史(増田隆一、阿部永編)分担執筆:アジアのネズミ類相の成因に関する時空間要因2005

    • Author(s)
      鈴木 仁
    • Total Pages
      288
    • Publisher
      北海道大学図書刊行会
    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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