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Phylogenetical analysis of plants which have diverged rapidly based on nucleotide variations in nuclear genes

Research Project

Project/Area Number 16570072
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biodiversity/Systematics
Research InstitutionTohoku University

Principal Investigator

MAKI Masayuki  Tohoku University, Graduate school of Life Sciences, Associate Professor, 大学院・生命科学研究科, 助教授 (60263985)

Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2005: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 2004: ¥2,200,000 (Direct Cost: ¥2,200,000)
Keywordsphylogenetical analysis / nuclear DNA / Hosta / Isodon / hybridization / chloroplast DNA / speciation / 核遺伝子 / イカリソウ属 / 種間交雑
Research Abstract

Phylogenetical analyses of the genus Hosta (Liliaceae) and Isodon (Labiatae) were conducted based on nucleotide variations in nuclear genes. Both Hosta and Isodon are considered to be have diverged rapidly in Japan. For Hosta, I determined a total of ca. 2300 bases of two alcohol dehydrogenase genes (Adh-land Adh-2) and a glyceraldehyde dehydrogenase (Gap). Based on the data, I carried out phylogenetical analyses. Compared to chloroplast DNA variation, many variations are found in these regions. Thus, it became clear that these nuclear genes have more phylogenetical information than cpDNA has. Most of genes cloned from a same taxon formed monophyletic groups, although some exceptions are found. Natural hybridizations or lineage sorting seems to relevant to this phylogeneical incongruity. For Isodon, I determined the nucleotide sequences in cpDNA, 18S-26S ITS, and 5S ITS. In cpDNA phylogeny, many incongruities were found, although such incongruities were less frequently found in nuclear DNA phylogeny. Natural hybridization seems to be involved in the divergence of the genus.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (7 results)

All 2006 2005

All Journal Article (7 results)

  • [Journal Article] A comparative study on reproductive characters and genetic diversities of an autogamous Tylophora matsumurae and its progenitor Tylophora tanakae (Apocynaceae-Asclepiadoideae).2006

    • Author(s)
      Yamashiro, T.
    • Journal Title

      Plant Systematics and Evolution 256

      Pages: 55-67

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A comparative study on reproductive characters and genetic diversities of an autogamous Tylophora matsumurae and its progenitor Tylophora tanakae (Apocynaceae-Asclepiadoideae).2006

    • Author(s)
      Yamashiro, T., Maki, M.
    • Journal Title

      Plant Systematics and Evolution 256

      Pages: 55-67

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Molecular phylogeny and evolution of alcohol dehydrogenase (Adh) genes in legumes.2005

    • Author(s)
      Fukuda, T.
    • Journal Title

      BMC Plant Biology 5

      Pages: 6-6

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Characterization of the TrcMADS1 gene of Trillium camtshcatcence (Trilliaceae) reveals functional evolution of the SOC/TM-3 line gene.2005

    • Author(s)
      Nakamura, T.
    • Journal Title

      Journal of Plant Research 118

      Pages: 229-235

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Molecular phylogeny and evolution of alcohol dehydrogenase (Adh) genes in legumes.2005

    • Author(s)
      Fukuda, T. et al.
    • Journal Title

      BMC Plant Biology 5

      Pages: 6-6

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Characterization of the TrcMADS1 gene of Trillium camtshcatcence (Trilliaceae) reveals functional evolution of the SOC/TM-3 line gene.2005

    • Author(s)
      Nakamura, T. et al.
    • Journal Title

      Journal of Plant Research 118

      Pages: 229-235

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Molecular phylogeny and evolution of alcohol dehydrogenase (Adh) genes in legumes2005

    • Author(s)
      Fukuda, T
    • Journal Title

      BMC Plant Biology 5

      Pages: 6-6

    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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