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Elucidation of reaction mechanism based on the three-dimensional structures of heme oygenase reaction intermediates

Research Project

Project/Area Number 16570095
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka University

Principal Investigator

FUKUYAMA Keiichi  Osaka University, Graduate School of Sciences, Professor, 大学院・理学研究科, 教授 (80032283)

Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2005: ¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 2004: ¥2,000,000 (Direct Cost: ¥2,000,000)
Keywordsheme oxygenase / three-dimensional structure / X-ray analysis / photosynthetic pigments / ferredoxin / 結晶構造 / シアノバクテリア / ビリン還元酵素 / PcyA / 光捕集色素
Research Abstract

Heme oxygenase (HO) is an essential enzyme in heme catabolism ; HO catalyzes heme cleavage at the α-position of heme using O_2 and reducing equivalents to produce biliverdin IXα,CO, and iron. In each of three sequential steps HO uses O_2 and in its second step CO is produced. Thus, HO should strictly discriminate O_2 and CO. We crystallographically pursued the behavier of CO photodissociated by laser from CO-heme-HO and clearly identified the site in HO which traps hydrophobic small molecules. This result reveals the molecular mechanism of escaping from product (CO) inhibition.
HO is indispensable for photosynthetic organisms. Red algae and cyanobacteria have phycobilisome containing bilin pigments which transfers photo-energy to photosystem II with high efficiency. These pigments are synthesyzed from biliverdin IXα by ferredoxin dependent bilin reductases. We determined the crystal structures of two HO isoforms from Synechocystis sp.PCC 6803 (Syn HO-1 and Syn HO-2). Syn heme-HO-1 had a fold similar to other HOs but the positively charged area on its surface was narrow. This feature may reflect the small size of the electron-transfer partner of ferredoxin. The structures of oxidized and reduced Syn heme-HO-2 and NO-heme-HO-2 demonstrated that NO was coordinated to the heme iron in bent form directing to α-meso carbon and that Syn heme-HO-2 forms a dimer. Gel chromatography suggested that it dimerize upon heme binding.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (18 results)

All 2006 2005 2004

All Journal Article (17 results) Book (1 results)

  • [Journal Article] Crystal structure of phycocyanobilin : ferredoxin oxidoreductase in complex with biliverdin IXα : a key enzyme in biosynthesis of phycocyanobilin2006

    • Author(s)
      Y.Hagiwara et al.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 103

      Pages: 27-32

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of phycocyanobilin : ferredoxin oxidoreductase in complex with biliverdin IXα : a key enzyme in biosynthesis of phycocyanobilin2006

    • Author(s)
      Y.Hagiwara, M.Sugishima, Y.Takahashi, K.Fukuyama
    • Journal Title

      Proc.Natl.Acad.Sci.USA 103

      Pages: 27-32

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of phycocyanobilin : ferredoxin oxidoreductase in complex with biliverdin Ixα : a key enzyme in biosynthesis of phycocyanobilin2006

    • Author(s)
      Y.Hagiwara, M.Sugishima, Y.Takahashi, K.Fukuyama
    • Journal Title

      Proc.Natl.Acad.Sci.USA 103・1

      Pages: 27-32

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Involvement of NADP(H) in the Interaction between Heme Oxyaenase-1 and Cvtochrome P450 Reductase2005

    • Author(s)
      H.Sakamoto et al.
    • Journal Title

      J. Biol. Chem. 280

      Pages: 729-737

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal Structure of Dimeric Heme Oxygenase-2 from Synechocystis sp. PCC6803 in Complex with Heme2005

    • Author(s)
      M.Sugishima et al.
    • Journal Title

      Biochemistry 44

      Pages: 4527-4266

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Involvement of NADP(H) in the Interaction between Heme Oxygenase-1 and Cytochrome P450 Reductase2005

    • Author(s)
      H.Sakamoto, S.Hayashi, M.Sugishima, K.Fukuyama, G.Palmer, M.Noguchi
    • Journal Title

      J.Biol.Chem. 280

      Pages: 729-737

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal Structure of Dimeric Heme Oxygenase-2 from Synechocystis sp. PCC6803 in Complex with Heme2005

    • Author(s)
      M.Sugishima, Y.Hagiwara, C.T.Migita, X.Zheng, T.Yoshida, K.Fukuyama
    • Journal Title

      Biochemistry 44

      Pages: 4257-4266

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] 立体構造からみたヘムオキシゲナーゼの反応機構2005

    • Author(s)
      坂本寛, 杉島正一, 東元祐一郎, 福山恵一, 野口正人
    • Journal Title

      生化学 77・7

      Pages: 634-638

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Involvement of NADP(H) in the Interaction between Heme Oxygenase-1 and Cytochrome P450 Reductase2005

    • Author(s)
      Y.Higashimoto, H.Sakamoto, S.Hayashi, M.Sugishima, K.Fukuyama, G.Palmer, M.Noguchi
    • Journal Title

      J.Biol.Chem. 280・1

      Pages: 729-737

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystal Structure of Dimeric Heme Oxygenase-2 from Synechocystis sp.PCC 6803 in Complex with Heme2005

    • Author(s)
      M.Sugishima, Y.Hagiwara, X.Zhang, T.Yoshida, C.T.Migita, K.Fukuyama
    • Journal Title

      Biochemistry (in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Hydroxylamine and Hydrazine Bind Directly to the Heme Iron of the Heme-Heme Oxygenase-1 Complex2004

    • Author(s)
      H.Sakamoto et al.
    • Journal Title

      J. Inorg. Biochem. 98

      Pages: 1223-1228

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] CO-trapping Site in Heme Oxygenase Revealed by Photolysis of its CO-bound Heme Complex : Mechanism of Escaping from Product Inhibition2004

    • Author(s)
      M.Sugishima et al.
    • Journal Title

      J. Mol. Biol. 341

      Pages: 7-13

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal Structure of Heme Oxygenase-1 from Cyan bacterium Synechocystis sp. PCC 6803 in Complex with Heme2004

    • Author(s)
      M.Sugishima et al.
    • Journal Title

      Eur. J. Biochem. 271

      Pages: 4517-4525

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Hydroxylamine and Hydrazine Bind Directly to the Heme Iron of the Heme-Heme Oxygenase-1 Complex2004

    • Author(s)
      H.Sakamoto, Y.Higashimoto, S.Hayashi, M.Sugishima, K.Fukuyama, G.Palmer, M.Noguchi
    • Journal Title

      J.Inorg.Biochem. 98

      Pages: 1223-1228

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] CO-trapping Site in Heme Oxygenase Revealed by Photolysis of its CO-bound Heme Complex : Mechanism of Escaping from Product Inhibition2004

    • Author(s)
      M.Sugishima, H.Sakamoto, M.Noguchi, K.Fukuyama
    • Journal Title

      J.Mol.Biol. 341

      Pages: 7-13

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] 「研究成果報告書概要(欧文)」より2004

    • Author(s)
      M.Sugishima, C.T.Migita, X.Zhang, T.Yoshida, K.Fukuyama
    • Journal Title

      Eur.J.Biochem. 271

      Pages: 4517-4525

    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of heme oxygenase-1 from cyanobacterium Synechocystis sp.PCC 6803 in complex with heme2004

    • Author(s)
      M.Sugishima, C.T.Migita, X.Zhang, T.Yoshida, K.Fukuyama
    • Journal Title

      Eur.J.Biochem. 271・22

      Pages: 4517-4525

    • Related Report
      2004 Annual Research Report
  • [Book] 基礎医学・生物系の同位体実験2005

    • Author(s)
      福山恵一, 杉島正一
    • Total Pages
      120
    • Publisher
      久留米大学
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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