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Mechanism of heme degradation by heme oxygenase and diversity of heme oxygenase among the various organisms

Research Project

Project/Area Number 16570108
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionYamagata University

Principal Investigator

YOSHIDA Tadashi  Yamagata University, School of Medicine, Professor, 医学部, 教授 (10004673)

Co-Investigator(Kenkyū-buntansha) SATO Michihiko  Yamagata University, School of Medicine, Associate Professor, 医学部, 助教授 (00135344)
ZHANG Xuhong  Yamagata University, School of Medicine, Instructor, 医学部, 助手 (10292442)
Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 2006: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2005: ¥1,300,000 (Direct Cost: ¥1,300,000)
Fiscal Year 2004: ¥1,400,000 (Direct Cost: ¥1,400,000)
KeywordsHeme oxygenase / Oxygen activation / Hydroxyheme / Verdoheme / Biliverdin / Cyanobacterium / Soybean, GmHO-1 / Corynebacterium diphtheriae / ピリベルジン / CO / 鉄 / 過酸化水素 / 酵素活性化 / ショウジョウバエ
Research Abstract

1.We cloned a cDNA for a Drosophila melanogaster homologue of mammalian heme oxygenase (HO) and constructed a bacterial expression system of a truncated, soluble form of its HO. The purified enzyme degraded hemin to biliverdin, CO and iron in the presence of reducing systems such as NADPH/cytochrome P-450 reductase and ascorbate.
2.Previously, HO-2 of cyanobacterium Synechocystis sp. PCC 6803 was reported to be inactive. To clarify the enzymatic nature of this protein we constructed a bacterial expression system for Syn HO-2 and successfully obtained purified protein. Accordingly, it was established that Syn HO-2 binds hemin stoichiometrically and converts it into biliverdin, CO and iron in the presence of oxygen and electrons, demonstrating that this protein is a true HO.
3.A higher plant HO, GmHO-1, of Glycine max (soybean), was prepared to evaluate the molecular features of its heme complex, the enzymatic activity, and the mechanism of heme conversion. Although the similarity in the amino acid sequence between GmHO-1 and HOs from other biological species is low, the heme bound to GmHO-1, in the ferric high-spin state, exhibits an acid-base transition and is converted to biliverdin, VO and iron in the presence of NADPH/ferredoxinreductase/ferredoxin, orascorbic acid. The mechanism of heme degradation by GmHO-1 appeared to be similar to that of known HOs, despite the low sequence homology.
4.The oxy form of HmuO, a HO of Corynebacterium diphtheriae, the precursor of the catalytically active ferric hydroperoxo species, was characterized by ligand binding kinetics, resonance Raman spectroscopy, and X-ray crystallography. In the crystal structure of the oxy form the Fe-O-O angle is 110° and the O-O bond is pointed toward the heme α-meso-carbon.
5.HO degrades verdoheme through a dual pathway using either O_2 or H_2O_2. Both reactions are initiated by the binding of O_2 or H_2O_2 to allow the first direct observation of degradation intermediates of verdoheme.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (31 results)

All 2006 2005 2004

All Journal Article (31 results)

  • [Journal Article] Spectroscopic characterisatior of higher plant heme oxggenase xso-form-1 from Glycine max2006

    • Author(s)
      Tomohiko Gohya
    • Journal Title

      FEBS Journal 273

      Pages: 5884-5399

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Characterisations of the spontaneous "aging" of the heme oxggenase from The2006

    • Author(s)
      Liu Yangsarg
    • Journal Title

      Biochemietry 45

      Pages: 3875-3886

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Characterization of the spontaneous aging of the heme oxygenase from the pathogenic bacterium Neisseria meningitidis via cleavage of the C-terminus in contact with the substrate.2006

    • Author(s)
      Liu Y.et al.
    • Journal Title

      Biochemistry 45

      Pages: 3875-38866

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Spectroscopic characterization of a higher plant heme oxygenase isoforms-1 from Glycine max (soybean)2006

    • Author(s)
      Gohya T. et al.
    • Journal Title

      FEBS J. 273

      Pages: 5384-5399

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Characterization of the spetaneous "Aging" of the home oxygenase from the pathegerical bacterium2006

    • Author(s)
      Liu Yangzhong
    • Journal Title

      Biochemistry 45・12

      Pages: 3875-3886

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Modulation of the axial water hydrogen-bonding poopertus by chemical modification of the subtrate2006

    • Author(s)
      Li-Hua Ma
    • Journal Title

      Journal of American Chemical Society 128・19

      Pages: 6391-6399

    • Related Report
      2006 Annual Research Report
  • [Journal Article] H NMR study of the magnetic properties and electronic structure of the bydroxide complex2006

    • Author(s)
      Li-Hua Ma
    • Journal Title

      Journal of American Chemical Society 128・20

      Pages: 6657-6668

    • Related Report
      2006 Annual Research Report
  • [Journal Article] IH NMR study of the influence of hemin→methyl substitution on the interaction between c-termius2006

    • Author(s)
      Liu Yangzhong
    • Journal Title

      Biochemistry 45・46

      Pages: 13875-13888

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Spectroscopic characterization of a higher plant heme oxygenase iso form-1 from Glycine max2006

    • Author(s)
      Tomohiko Gohya
    • Journal Title

      FEBS Journal 273

      Pages: 5384-5399

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Cristal structure of human indoleamine 2,3-dioxygenase2006

    • Author(s)
      Sugimoto Hiroshi
    • Journal Title

      Proceeding National Aca.Sci. 103・8

      Pages: 2611-2616

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Charaterizations of the spontaneous "aging" of the Heme oxygenase from the2006

    • Author(s)
      Liu Yangzhong
    • Journal Title

      Biochemistry 45・12

      Pages: 3875-3886

    • Related Report
      2005 Annual Research Report
  • [Journal Article] O_2- and H_2O_2- dependent Uerdoheme degradation ey heme oxygenase2005

    • Author(s)
      Matsui Toshitaka
    • Journal Title

      Journal of Biological Chemietry 280

      Pages: 36833-36840

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Protein expresses ey The ho2 gene of the cyane-lacterium Synechocystis sp. pcc 68a3 is a true2005

    • Author(s)
      Zhang Xuhong
    • Journal Title

      FEBS Journal 272

      Pages: 1012-1022

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Protein expressed by the ho2 gene of the cyanobacterium Synechocystis sp. PCC6803 is a true heme oxygenase2005

    • Author(s)
      Zhang X. et al.
    • Journal Title

      FEBS J. 272

      Pages: 1012-1022

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal structure of dimeric heme oxygenase-2 from cyanobacterium Synechocystis sp. PCC6803 in complex with heme2005

    • Author(s)
      Sugishima M. et al.
    • Journal Title

      Biochemistry 272

      Pages: 4257-4266

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] O_2-and H_2O_2-dependent verdoheme degradation by heme oxygenase2005

    • Author(s)
      Matsui T. et al.
    • Journal Title

      J.Biol.Chem. 280

      Pages: 36833-36840

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Solution structure ^1H NMR Characterization of the distal H-bond Network and the2005

    • Author(s)
      Liu Yangzhong
    • Journal Title

      Journal of American Chemical Society 127・17

      Pages: 6409-6422

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Evidence for the hydrophobic cavity of heme oxygenase-1 to be a CO-trapping site2005

    • Author(s)
      Migita C Taiko
    • Journal Title

      Biochem.Biophys.Res.Commun. 338

      Pages: 584-589

    • Related Report
      2005 Annual Research Report
  • [Journal Article] O_2- and H_2O_2-dependent vardoheme degradation by heme oxygenase2005

    • Author(s)
      Matui Toshitaka
    • Journal Title

      Journal of Biological Chemistry 280・44

      Pages: 36833-36840

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Crystallization and preliminary crystallozation studies of human indoleamine2005

    • Author(s)
      Oda Shun-ichiro
    • Journal Title

      Acta Crystallographica F62

      Pages: 221-223

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Crystal Structure of Dimeric Heme Oxygenase-2 from Synechocystis sp.PCC 6803 in Complex with Heme2005

    • Author(s)
      Sugishima Masakazu
    • Journal Title

      Biochemistry 44・11

      Pages: 4257-4266

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Protein expressed by the ho2 gene of the cyanobacterium Synechocystis sp.PCC 6803 is a true heme oxygenase2005

    • Author(s)
      Zhang Xuhong
    • Journal Title

      FEBS Journal 272

      Pages: 1012-1022

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Cruptal structure of the aioxygen tound heme oxygenase from corgnetacterium diphtheria2004

    • Author(s)
      Unno Masaki
    • Journal Title

      Journal of Bialogical Chemietry 279

      Pages: 21053-21061

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Unique feature of recompinant heme oxggenase of Drosophila melanegaster comparea with2004

    • Author(s)
      Zhang Xuhong
    • Journal Title

      European Journal of Biochemietry 271

      Pages: 1713-1724

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Unique features of recombinant heme oxygenase of Drosophila melanogaster compared with those of other heme oxygenase studied2004

    • Author(s)
      Zhang X. et al.
    • Journal Title

      Eur.J.Biochem 271

      Pages: 1713-1724

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal structure of the dioxygen-bound heme oxygenase from Corynebacterium diphtheriae2004

    • Author(s)
      Unno M.et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 21055-21061

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal structure of heme oxygenase-1 from cyanobacterium Synechocystis sp. PCC6803 in complex with heme2004

    • Author(s)
      Sugishima M. et al.
    • Journal Title

      Eur.J.Biochem. 271

      Pages: 4517-4525

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal structure of heme oxygenase-1 from cyanobacterium Synechocystis sp.PCC 68032004

    • Author(s)
      Sugishima Masakazu
    • Journal Title

      European Journal of Biochemistry 271

      Pages: 4517-4523

    • Related Report
      2004 Annual Research Report
  • [Journal Article] ^1H NMR Characterization of the Solution Active Site Structure of Substrate-Bound, Cyanide-Inhibited Heme Oxygenase from Neisseria meningitidis2004

    • Author(s)
      Liu Yangzhong
    • Journal Title

      Biochemistry 43・31

      Pages: 10112-10126

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystal structure of the dioxygen-bound heme oxygenase from Corynebacterium diphtheriae : Implications for heme oxygenase function2004

    • Author(s)
      Unno Masaki
    • Journal Title

      Journal of Biological Chemistry 279・20

      Pages: 21055-21061

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Unique features of recombinant heme oxygenase of Drosophila melanogaster compared with those of other heme oxygenases studied2004

    • Author(s)
      Zhang Xuhong
    • Journal Title

      European Journal of Biochemistry 271

      Pages: 1713-1724

    • Related Report
      2004 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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