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Research of Enzymes Involved in Metabolism of Organic Sulfur Compounds -Improvement by Protein Engineering and Search of Novel Functions-

Research Project

Project/Area Number 16580058
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionTottori University

Principal Investigator

OHSHIRO Takashi  Tottori University, Fac.Engineering, Lecturer, 工学部, 講師 (00233106)

Co-Investigator(Kenkyū-buntansha) IZUMI Yoshikazu  Tottori University, Fac.Engineering, Professor, 工学部, 教授 (40026555)
Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 2006: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2005: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2004: ¥2,400,000 (Direct Cost: ¥2,400,000)
KeywordsMicrobial desulfurization / Desulfinase / Flavin reductase / Indigo / Dibenzothiophene / Monooxygenase / dibenzothiophene / desulfinase / flavin reductase
Research Abstract

The structure of 2'-hydroxybiphenyl 2-sulfinate desulfinase (DszB) from Rhodococcus erythropolis, the moderately desulfurization bacterium, has been elucidated, and that of the enzyme-substrate complex has been also revealed. This is the first report about the three dimensional structure among dibenzothiophene (DBT) desulfurizing enzymes. The enzyme structure changed by incorporating the substrate, 2'-hydroxybiphenyl 2-sulfinate, and His 60 residue moved into the catalytic center. Based upon the structure of DszB, the site-directed mutagenesis was performed to improve the enzyme property. It was found that some mutant enzymes had higher thermal stability than the wild-type enzyme.
The strain, Bacillus subtilis WU-S2B, is the thermophilic desulfurizing bacterium, which could grow up to 50℃. The enzymes (BdsC, BdsA, BdsB) involved in DBT metabolism were purified to homogeneity, the overproducing E.coli strains were constructed, and their enzymatic properties were investigated. Since we estimated the activity of BdsC toward several aromatic compounds and found out that BdsC utilize indole as a substrate. This result shows that BdsC catalyzes the reactions of compounds without the DBT skeleton, and it is the new function of the desulfurizing enzymes.
In order to perform the microbial desulfurization at higher temperature, we purified flavin reductase from the thermophilic strain, Bacillus sp.DSM411. We obtained the corresponding gene and overproduce the enzyme with the recombinant E.coli strain. The productivity was 440 fold higher than the wild-type strain. The efficient reaction coupled with BdsC was confirmed.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (16 results)

All 2006 2005 2004

All Journal Article (16 results)

  • [Journal Article] Crystal structure and desulfurization mechanism of 2'-hydroxybiphenyl-2-sulfinic acid desulfinase2006

    • Author(s)
      W.C.Lee, T.Ohshiro, T.Matsubara, Y.Izumi, M.Tanokura
    • Journal Title

      J. Biol. Chem. 281

      Pages: 32534-32539

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal structure and desulfurization mechanism of 2'-hydroxybiphenyl-2-sulfinic acid desulfinase2006

    • Author(s)
      W.C.Lee, T.Ohshiro, T.Matsubara, Y.Izumi, M.Tanokura
    • Journal Title

      J.Biol.Chem. 281

      Pages: 32534-32539

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal structure and desulfurization mechanism of 2'-hydroxybipheny1-2-sulfinic acid desulfinase2006

    • Author(s)
      W.C.Lee, T.Ohshiro, T.Matsubara, Y.Izumi, M.Tanokura
    • Journal Title

      J. Biol. Chem. 281

      Pages: 32534-32539

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Dibenzothiophene desulfurizing enzymes from moderately thermophilic bacterium Bacillus subtilis WU-S2B : Purification, characterization and overexpression2005

    • Author(s)
      T.Ohshiro, Y.Ishii, T.Matsubara, K.Ueda, Y.Izumi, K.Kino, K.Kirimura
    • Journal Title

      J. Biosci. Bioeng. 100

      Pages: 266-273

    • NAID

      210000130368

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Reaction of serine-glyoxylate aminotransferase with the alternative substrate ketomalonate indicates rate-limiting protonation of a quinonoid intermediate2005

    • Author(s)
      W.E.Karsten, T.Ohshiro, Y.Izumi, P.F.Cook
    • Journal Title

      Biochemistry 44

      Pages: 15930-15936

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Enhancing effect of calcium and vanadium ions on thermal stability of bromoperoxidase from Corallina pilulifera2005

    • Author(s)
      E.Garcia-Rodriguez, T.Ohshiro, T.Aibara, Y.Izumi, J.Littlechild
    • Journal Title

      J. Biol. Inorg. Chem. 10

      Pages: 275-282

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Dibenzothiophene desulfurizing enzymes from moderately thermophilic bacterium Bacillus subtilis WU-S2B : Purification, characterization and overexpression2005

    • Author(s)
      T.Ohshiro, Y.Ishii, T.Matsubara, K.Ueda, Y.Izumi, K.Kino, K.Kirimura
    • Journal Title

      J.Biosci.Bioeng. 100

      Pages: 266-273

    • NAID

      210000130368

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Enhancing effect of calcium and vanadium ions on thermal stability of bromoperoxidase from Corallina pilulifera2005

    • Author(s)
      E.Garcia-Rodriguez, T.Ohshiro, T.Aibara, Y.Izumi, J.Littlechild
    • Journal Title

      J.Biol.Inorg.Chem. 10

      Pages: 275-282

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Enhancing effect of calcium and vanadium ions on thermal stability of bromoperoxidase from Corallina pilulifera2005

    • Author(s)
      E.Garcia-Rodriguez, T.Ohshiro, T.Aibara, Y.Izumi, J.Littlechild
    • Journal Title

      J.Biol.Inorg.Chem., 10

      Pages: 275-282

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Crystallization and preliminary X-ray analyses of desulfurization enzyme DszB and its C27S mutant complexed with biphenyl-2-sulfinic acid2004

    • Author(s)
      W.C.Lee, T.Ohshiro, T.Matsubara, Y.Izumi, M.Tanokura
    • Journal Title

      Acta Crystallographica Section D D60

      Pages: 1636-1638

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Thermostable flavin reductase that couples with dibenzothiophene monooxygenase, from thermophilic Bacillus sp. DSM411 : Purification, characterization, and gene cloning2004

    • Author(s)
      T.Ohshiro, H.Yamada, T.Shimoda, T.Matsubara, Y.Izumi
    • Journal Title

      Biosci. Biotechnol. Biochem. 68

      Pages: 1712-1721

    • NAID

      10013520851

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray analyses of desulfurization enzyme DszB and its C27S mutant complexed with biphenyl-2-sulfinic acid2004

    • Author(s)
      W.C.Lee, T.Ohshiro, T.Matsubara, Y.Izumi, M.Tanokura
    • Journal Title

      Acta Crystallographica Section D 60

      Pages: 1636-1638

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Thermostable flavin reductase that couples with dibenzothiophene monooxygenase, from thermophilic Bacillus sp. DSM411 : Purification, characterization, and gene cloning2004

    • Author(s)
      T.Ohshiro, H.Yamada, T.Shimoda, T.Matsubara, Y.Izumi
    • Journal Title

      Biosci.Biotechnol.Biochem. 68

      Pages: 1712-1721

    • NAID

      10013520851

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary X-ray analyses of desulfurization enzyme Dsz B and its C27S mutant complexed with biphenyl-2-sulfinic acid2004

    • Author(s)
      W.C.Lee., T.Ohshiro, T.Matsubara, Y.Izumi., M.Tanokura
    • Journal Title

      Acta Crystallographica Section D 1636-1638 D60

      Pages: 1636-1638

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Thermostable flavin reductase that couples with dibenzothiophene monooxygenase, from thermophilic Bacillus sp.DSM411 : Purification characterization, and gene cloning2004

    • Author(s)
      T.Ohshiro, H.Yamada, T.Shimoda, T.Matsubara, Y.Izumi
    • Journal Title

      Biosci.Biotechnol.Biochem. 68

      Pages: 1712-1721

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Modification of halogen specificity of a vanadium-dependent brom operoxidase2004

    • Author(s)
      T.Ohshiro, J.Littlechild, E.Garcia-Rodriguez, M.N.Isupov, Y.Iida, T.Kobayashi, Y.Izumi
    • Journal Title

      Protein Science 13

      Pages: 1566-1571

    • Related Report
      2004 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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