Mechanism of phytochrome signaling mediated by protein interaction

• Project/Area Number: 16580076
• Research Category: Grant-in-Aid for Scientific Research (C)
• Allocation Type: Single-year Grants
• Section: 一般
• Research Field: Applied biochemistry
• Research Institution: Kyoto University
• Principal Investigator: KOHCHI Takayuki Kyoto University, Graduate School of Biostudies, Professor, 生命科学研究科, 教授 (40202056)
• Co-Investigator(Kenkyū-buntansha): 横田 明穂 奈良先端科学技術大学院大学, バイオサイエンス研究科, 教授 (40118005) ; 竹村 美保 奈良先端科学技術大学院大学, バイオサイエンス研究科, 助手 (20273857)
• Project Period (FY): 2004 – 2005
• Project Status: Completed (Fiscal Year 2005)
• Budget Amount: ¥3,700,000 (Direct Cost: ¥3,700,000); Fiscal Year 2005: ¥1,400,000 (Direct Cost: ¥1,400,000); Fiscal Year 2004: ¥2,300,000 (Direct Cost: ¥2,300,000)
• Keywords: photoreceptor / phytochrome / chromophore / photomorphogenesis / Arabidopsis thaliana / protein interaction / phytochromobilin / 暗反転

Research Abstract

Sessile and photoautotrophic plants have developed very sensitive and sophisticated system to recognize light conditions properly for their survival and successful propagation. Phytochrome is a major photoreceptor in plants. However, the mechanisms of signal transduction mediated by phytochrome is largely unknown. The protein interaction should be a key mechanism for signaling for phytochrome since phytochrome have very specific character showing photoreversible conformation changes by illumination. To study protein interaction with phytochrome, the photoactive phytochrome with chromophore is required. By co-expression of heme oxygenase and various bilin reductase(s) in a single operon in conjunction with apophytochrome using two compatible plasmids, we developed a system to produce phytochromes with various chromophores in Escherichia coli. The metabolic engineering of bacteria for the production of various bilins for assembly into phytochromes will facilitate the molecular analysis of photoreceptors. We also generated transgenic plants that express epitope-tagged phytochromes. The introduced fusion genes were active and functional to rescue phytochrome mutant phenotype of phyA and phyB. Another approach we took to identify interacting proteins was yeast two-hybrid assays. A novel transcription factor containing zinc finger domain was identified. The specificity of interaction for wavelength was verified by using expressed proteins in vitro. The identified protein is a good candidate to mediated photobiological response since the knock-out mutant showed delayed flowering phenotype.
In addition to Arabidopsis works, we isolated several genes and corresponding mutants for heme oxygenase and phytochromobilin synthase for phytocrome chromophore biosynthesis from maize, pea and tomato. In particular, the tomato AUREA protein was expressed at higher levels in soluble form in E.coli.

Research Products

• [Journal Article] Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli. (2006)
  • Author(s): Mukougawa, K., Kanamotoa, H., Kobayashi, T., Yokota, A., Kohchi, T.
  • Journal Title: FEBS Letters 580 Pages: 1333-1338
  • Description: 「研究成果報告書概要(和文)」より
• [Journal Article] Reconstitution of blue/green reversible photoconversion of a cyanobacterial photoreceptor, PixJl in phycocyanobilin producing E. coli. (2006)
  • Author(s): Yoshihara, S., Shimada, T., Matsuoka, D., Zikihara, K., Kohchi, T., Tokutomi, S.
  • Journal Title: Biochemistry 45 Pages: 3775-3781
  • Description: 「研究成果報告書概要(和文)」より
• [Journal Article] Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli. (2006)
  • Author(s): Mukougawa, K., Kanamotoa, H., Kobayashi, T., Yokota, A., Kohchi, T.
  • Journal Title: FEBS Lett. 580 Pages: 1333-1338
  • Description: 「研究成果報告書概要(欧文)」より
• [Journal Article] Reconstitution of blue/green reversible photoconversion of a cyanobacterial photoreceptor. PixJ1 in phycocyanobilin producing E.coli. (2006)
  • Author(s): Yoshihara, S., Shimada, T., Matsuoka, D., Zikihara, K., Kohchi, T., Tokutomi, S.
  • Journal Title: Biochem. 45 Pages: 3775-3784
  • Description: 「研究成果報告書概要(欧文)」より
• [Journal Article] Isolation and functional characterization of fatty acid D5-elongase gene from the liverwort Marchantia polymorpha L. (2006)
  • Author(s): Kajikawa, M., Yamato, K.T., Sakai, Y., Fukuzawa, H., Ohyama, K., Kohchi, T.
  • Journal Title: FEBS Lett. 580 Pages: 149-154
• [Journal Article] Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli. (2006)
  • Author(s): Mukougawa, K., Kanamoto, H., Kobayashi, T., Yokota, A., Kohchi, T.
  • Journal Title: FEBS Lett. 580 Pages: 1333-1338
• [Journal Article] Reconstitution of blue/green reversible photoconversion of a cyanobacterial photoreceptor, PixJ1 in phycocyanobilin producing E.coli. (2006)
  • Author(s): Yoshihara, S., Shimada, T., Matsuoka, D., Zikihara, K., Kohchi, T., Tokutomi, S.
  • Journal Title: Biochem. 45 Pages: 3775-3784
• [Journal Article] Biosynthesis of chromophores for phytochrome and related photoreceptors in photosynthetic organisms (2005)
  • Author(s): Kohchi, T., Kataoka, H., Linley, P.J.
  • Journal Title: Plant Biotechnology 22 Pages: 409-413
  • Description: 「研究成果報告書概要(和文)」より
• [Journal Article] The tomato photomorphogenetic mutant, aurea, is deficient in phytochromobilin synthase for phytochrome chromophore biosynthesis. (2005)
  • Author(s): Muramoto, T., Kami, C., Kataoka, H., Iwata, N., Linley, P.J., Mukougawa, K., Yokota, A., Kohchi, T.
  • Journal Title: Plant Cell Physiology 46 Pages: 409-413
  • NAID: 10015464438
  • Description: 「研究成果報告書概要(和文)」より
• [Journal Article] The tomato photomorphogenetic mutant, aurea, is deficient in phytocbromobilin synthase for phytochrome chromophore biosynthesis. (2005)
  • Author(s): Muramoto, T., Kami, C., Kataoka, H., Iwata, N., Linley, P.J., Mukougawa, K., Yokota, A., Kohchi, T.
  • Journal Title: Plant Cell Physiol. 46 Pages: 661-665
  • Description: 「研究成果報告書概要(欧文)」より
• [Journal Article] Biosynthesis of chromophores for phytoclirome and related photoreceptors in photosynthetic organisms. (2005)
  • Author(s): Kohchi, T., Kataoka, H., Linley, P.J.
  • Journal Title: Plant Biotech. 22 Pages: 409-413
  • Description: 「研究成果報告書概要(欧文)」より
• [Journal Article] Biosynthesis of chromophores for phytochrome and related photoreceptors in photosynthetic organisms (2005)
  • Author(s): Kohchi, T., Kataoka, H., Linley, P.J.
  • Journal Title: Plant Biotech. 22 Pages: 409-413
• [Journal Article] The tomato photomorphogenetic mutant, aurea, is deficient in phytochromobilin synthase for phytochrome chromophore biosynthesis. (2005)
  • Author(s): Muramoto, T., Kami, C., Kataoka, H., Iwata, N., Linley, P.J., Mukougawa, K., Yokota, A., Kohchi T.
  • Journal Title: Plant Cell Physiol. 46 Pages: 661-665
  • NAID: 10015464438
• [Journal Article] Phylogenetic profiling of Arabidopsis genes by monitoring spatial gene expression using cDNA microarrays. (2005)
  • Author(s): Yamakawa, S., Ando, K., Yoshida, K., Yokota, A., Shinmyo, A., Kohchi, T.
  • Journal Title: Plant Biotech. 22 Pages: 55-58
  • NAID: 10026526423
• [Journal Article] The tomato photomorphogenetic mutant, aurea, is deficient in phytochromobilin synthase for phytochrome chromophore biosynthesis. (2005)
  • Author(s): T.Muramoto, C.Kami, H.Kataoka, N.Iwata, P.J.Linley, K.Mukougawa, A.Yokota, T.Kohchi
  • Journal Title: Plant Cell Physiology 46(In press)
  • NAID: 10015464438
• [Journal Article] The Elml (ZmHy2) Gene of Maize Encodes a Phytochromobilin Synthase. (2004)
  • Author(s): Sawers, R.J., Linley, P.J., Gutierrez-Marcos, J.F., Delli-Bovi, T., Farmer, P.R., Kohchi, T., Terry, M.J., Brutnell, T.
  • Journal Title: Plant Physiology 136 Pages: 2771-2781
  • Description: 「研究成果報告書概要(和文)」より
• [Journal Article] The Elm1 (ZmHy2) Gene of Maize Encodes a Phytochromobilin Synthase. (2004)
  • Author(s): Sawers, R.J., Linley, P.J., Gutierrez-Marcos, J.F., Delli-Bovi, T., Farmer, P.R., Kohchi, T., Terry M.J., Brutnell, T.P.
  • Journal Title: Plant Physiol. 136 Pages: 2771-2781
  • Description: 「研究成果報告書概要(欧文)」より
• [Journal Article] Molecular characterization of the cytoplasmic interacting protein of the receptor kinase IRK expressed in the inflorescence and root apices of Arabidopsis (2004)
  • Author(s): Hattan, J., Kanamoto, H., Takemura, M., Yokota, A., Kohchi, T.
  • Journal Title: Biosci Blotechnol Biochem. 68 Pages: 2598-2598
  • NAID: 130000030891
• [Journal Article] The Elm1 (ZmHy2) Gene of Maize Encodes a Phytochromobilin Synthase. (2004)
  • Author(s): Sawers, R.J., Linley, P.J., Gutierrez-Marcos, J.F., Delli-Bovi, T., Farmer, P.R., Kohchi, T., Terry, M.J., Brutnell, T.
  • Journal Title: Plant Physiology 136 Pages: 2771-2771