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Construction of super-stable enzymes : distinct reversibility of structure and its mechanism

Research Project

Project/Area Number 16580280
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied molecular and cellular biology
Research InstitutionKagoshima University

Principal Investigator

TOKUNAGA Masao  Kagoshima University, Faculty of Agriculture, Professor (20112782)

Co-Investigator(Kenkyū-buntansha) ISHIBASHI Matsujiro  Kagoshima University, Faculty of Agriculture, Associate Professor (20305163)
Project Period (FY) 2004 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,950,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥150,000)
Fiscal Year 2007: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2006: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2005: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2004: ¥1,900,000 (Direct Cost: ¥1,900,000)
Keywordshalophilic enzyme / halophilic bacteria / nucleoside dinhosnhate kinase / chimeric protein / solubility / 好塩性 / 酸性アミノ酸 / 変異 / サブユニット / 蛋白質 / 高次構造形成 / フォールディング / キメラ蛋白質
Research Abstract

(1) We have succeeded in the expression of haloarchaeal nucleoside diphosphate in Escherichia coil and X-ray structure analysis. The structure of main chain of polypeptide is quite similar to non-halophilic counterpart, indicating elegant distribution of side chains of acidic amino acid residues.
(2) We have cloned nucleoside diphosphate kinase gene from moderately halophilic bacteria and expressed it in E. coil. We found for the first time it forms dimeric structure.
(3) We have succeeded in the construction, expression, purification and characterization of chimeric nucleoside diphosphate kinase molecules from the enzymes isolated from Halomonas and Pseudomonas, which is halophilic and non-halophilic bacteria, respectively.
Consequently, the landmark of halophilic protein is found to be
(1) higher optimum salt concentration for enzymatic activity
(2) higher stability at higher salt environment
(3) highly reversible characteristics due to its high solubility
(4) slow mobility on SDS-polyacrylamide gel electrophoresis.

Report

(5 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (11 results)

All 2008 2007 2006 2005

All Journal Article (8 results) (of which Peer Reviewed: 4 results) Presentation (2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Residue 134 detrmines the dimer-tetramer assembly of nucleoside diphosphate kinase from moderately halophilic bacteria2008

    • Author(s)
      Tokunaga H., Ishibashi, M., Arisaka, F., Arai, S., Kuroki, R., Arakawa, T., Tokunaga, M.
    • Journal Title

      FEBS Lett 582

      Pages: 1049-1054

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dimeric structure of nucleoside diphosphate kinase from moderately halophhilic bacterium:contrast to the tetrameric Pseudomonas counterpart2007

    • Author(s)
      Y.Yonezawa, K.Izutsu, H.Tokunaga, K.Maeda, T.Arakawa, and M.Tokunaga
    • Journal Title

      FEMS Microbiol.Lett. 268

      Pages: 52-58

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Dimeric structure of nucleoside diphosphate kinase from moderately halophilic bacterium : contrast to the tetrameric Pseudomonas counterpart2007

    • Author(s)
      Y. Yonezawa, K. Izutsu, H. Tokunaga, H. Maeda, T. Arakawa, M. Tokunaga
    • Journal Title

      FEMS Microbiol. Lett 268

      Pages: 52-58

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Contribution of halophilic nucleoside diphosphate kinase from Halomonas sp.593 to the heat stability of chimeric molecule2006

    • Author(s)
      H.Tokunaga, Y.Oda, Y.Yonezawa, T.Arakawa, and M.Tokunaga, 525-530(2006)
    • Journal Title

      ProteinPept.Lett. 13

      Pages: 525-530

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Contribution of halophilic nucleoside diphosphate kinase from Halomonas sp. 593 to the heat stability of chimeric molecule2006

    • Author(s)
      H. Tokunaga, Y. Oda, Y. Yonezawa, T. Arakawa, M. Tokunaga
    • Journal Title

      Protein Pept. Lett 13

      Pages: 525-530

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Contribution of Halophilic Nucleoside Diphosphate Kinase Sequence to the Heat Stability of Chimeric Molecule2006

    • Author(s)
      H.Tokunaga et al.
    • Journal Title

      Protein & Peptide Letters 13

      Pages: 525-530

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum2005

    • Author(s)
      H.Besir, K.Zeth, A.Bracher, U.Heider, M.Ishibashi, M.Tokunaga, D.Oesterhelt
    • Journal Title

      FEBS Lett. 579

      Pages: 6595-6600

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum2005

    • Author(s)
      H. Besir, K. Zeth, A. Bracher, U. Heider, M. Ishibashi, M. Tokunaga, D. Oesterhelt
    • Journal Title

      FEBS Lett 579

      Pages: 6595-6600

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 高い構造可逆性と新規二量体構造を示した中度好塩性細菌由来nucleoside diphosphate kinase2008

    • Author(s)
      米澤悌、徳永廣子、前田浩貴、石橋松二郎、徳永正雄
    • Organizer
      日本農芸化学会
    • Place of Presentation
      名城大学
    • Year and Date
      2008-03-27
    • Related Report
      2007 Annual Research Report
  • [Presentation] Electrostatic and hydrophobic interactions play a major role in the stability and refolding of halophilic proteins2005

    • Author(s)
      Masao Tokunaga, Matsujiro Ishibashi, Hiroko Tokunaga, and Tsutomu Arakawa
    • Organizer
      International Symposium on Extremophiles and Their Applications
    • Place of Presentation
      Tokyo
    • Year and Date
      2005-11-29
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 融合タンパク質発現ベクター2005

    • Inventor(s)
      徳永 正雄 他
    • Industrial Property Rights Holder
      鹿児島大学
    • Industrial Property Number
      2005-047809
    • Filing Date
      2005-02-23
    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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