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Synthetic Studies of Liposidomycin : Studies of Stereochemistry and biological activity mechanism

Research Project

Project/Area Number 16590008
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemical pharmacy
Research InstitutionToyama Prefectural University

Principal Investigator

NAKAJIMA Noriyuki  Toyama Prefectural University, Faculty of Engineering, Department of Biochemistry, Professor, 工学部, 教授 (40188959)

Project Period (FY) 2004 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2006: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 2005: ¥600,000 (Direct Cost: ¥600,000)
Fiscal Year 2004: ¥2,600,000 (Direct Cost: ¥2,600,000)
Keywordsnucleoside antibiotics / peptidoglycan / biosynthesis inhibitor / total synthesis / diazepanone ring / nitrobenzenesulfonamide protecting group / 構造活性相関
Research Abstract

Liposidomycins are a family of novel lipid-containing nucleoside antibiotics of unusual complexity, found in the culture filtrate and mycelia of streptomyces griseosporeus. They are selective antibiotics showing highly specific inhibition toward phospho-N-acetylmuramylpentapeptide transferase that is the primary stage of a lipid cycle in bacterial peptidoglycan synthesis. Liposidomycin B also inhibits in vitro formation of polyprenyl(pyro)phosphate N-acetylglucosamine, an intermediate in glycoconjugate biosynthesis. The structures were proposed on the basis of NMR and mass spectral evidence of degradation compound but the stereochemistry was revealed by X-ray crystallography analysis of caprazamycin that is an analog of liposidomycins.
We start to study the synthetic of liposidomycin degradation product. A stereocontrolled synthesis of the liposidomycin diazepanone ring system having a phenyl substituent has been achieved. In the presence of an amino group on the diazepanone ring, the introduction of a uracil group did failed. The N-glycosylation proceeded smoothly to obtain the uracil compound having electron-withdrawing nitrobenzenesulfonamide (Ns) and formyl protecting at an amino group on the diazepanone ring. The detailed examination of the N-glycosylation was accomplished for the total synthesis of liposidomycins.

Report

(4 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (17 results)

All 2007 2006 2005 2004 Other

All Journal Article (16 results) Book (1 results)

  • [Journal Article] Synthetic Studies of Liposidomycin Degradation Product : Model Studies of Uracil Group Introduction2007

    • Author(s)
      Fukunishi, S., Ubukata, M., Nakajima, N.
    • Journal Title

      Heterocycles 73(in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Perianth Bottom-Specific Blue Color Development in Tulip cv. Murasakizuisho Requires Ferric Ions2007

    • Author(s)
      Shoji, K., Miki, N., Nakajima, N., Momonoi, K., Kato C., Yoshida, K.
    • Journal Title

      Plant and Cell Physiology 48

      Pages: 243-251

    • NAID

      10018519384

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Epicatechin conjugated with fatty acid is a potent inhibitor of DNA polymerase and angiogenesis2007

    • Author(s)
      Matsubara, K., Saito, A., Tanaka, A., Nakajima, N., Akagi, R., Mori, M., Mizushina, Y.
    • Journal Title

      Life Sciences 80

      Pages: 1578-1585

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Synthesis of galloyl-substituted procyanidin B4 series, and their DPPH radical scavenging activity and DNA polymerase inhibitory activity2006

    • Author(s)
      Sakuda, H., Saito, A., Mizushina, Y., Yoshida, H., Tanaka, A., Nakajima, N.
    • Journal Title

      Heterocycles 67

      Pages: 175-188

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Catechin conjugated with fatty acid inhibits DNA polymerase and angiogenesis2006

    • Author(s)
      Matsubara, K, Saito A., Tanaka, A., Nakajima, N., Akagi, R., Mori, M., Mizushina, Y.
    • Journal Title

      DNA & Cell Biol. 25

      Pages: 95-103

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Synthesis of cyclic polygrycerols2006

    • Author(s)
      Kawagishi, T., Yoshikawa, K., Ubukata, M., Hamada, M., Nakajima, N.
    • Journal Title

      Heterocycles 69

      Pages: 107-111

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Synthetic Studies of Liposidomycin Degradation Product : Attempt for Introduction of an Uracil group2005

    • Author(s)
      Fukunishi, S., Ubukata, M., Nakajima, N.
    • Journal Title

      Heterocycles 66

      Pages: 129-134

    • NAID

      40007080605

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Systematic Synthesis of Galloyl-substituted Procyanidin B 1 and B2, and Their Ability of DPPH Radical Scavenging Activity and Inhibitory Activity of DNA Polymerases2005

    • Author(s)
      Saito A., Mizushina, Y., Ikawa, H., Yoshida, H., Doi, Y., Tanaka, A., Nakajima, N.
    • Journal Title

      Bioorg.Med.Chem. 13

      Pages: 2759-2771

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Structural Analysis of Catechin Derivatives, as Mammalian DNA Polymerase Inhibitors2005

    • Author(s)
      Saito A., Mizushina, Y., Ikawa, H., Yoshida, H., Doi, Y., Tanaka, A., Nakajima, N.
    • Journal Title

      Biochem.Biophys.Res.Commun. 333

      Pages: 101-109

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Stereoselective Synthesis of Procyanidin Oligomers and Their Bioactivity2005

    • Author(s)
      Saito.A., Nakajima, N.
    • Journal Title

      Journal of Synthetic Organic Chemistry, Japan 63

      Pages: 982-994

    • NAID

      130000928676

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Efficient stereoselective synthesis of proanthocyanidin trimers with TMSOTf-catalyzed intermolecular condensation2004

    • Author(s)
      A.Saito, A.Tanaka, M.Ubukata, N.Nakajima
    • Journal Title

      Synlett

      Pages: 1069-1073

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Stereoselection of 3,4-cis and 3,4-trans Catechin and Catechin Condensation under Intramolecular Coupling Method2004

    • Author(s)
      A.Saito, A.Tanaka, M.Ubukata, N.Nakajima
    • Journal Title

      Synlett

      Pages: 2040-2042

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Systematic synthesis of four epicatechin series procyanidin trimers andtheir in hibitory activity on the Maillard reaction and antioxidant activity2004

    • Author(s)
      A.Saito, Y.Doi, A.Tanaka, N.Matsuura, M.Ubukata, N.Nakajima
    • Journal Title

      Bioorg.Med.Chem. 12

      Pages: 4783-4790

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Design and Synthesis of 16-Membered Hybrid Macrolide having a Thiazole side Chain on the Carbonolide Skeleton2004

    • Author(s)
      N.Nakajima, M.Ubukata
    • Journal Title

      Heterocycles 64

      Pages: 333-345

    • NAID

      40006603423

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Systematic synthesis of galloyl-substituted procyanidin B1 and B2, and their ability of DPPH radical scavenging activity and inhibitory2004

    • Author(s)
      A.Saito, Y.Mizushina, H.Ikawa, H.Yosida, Y.Doi, A.Tanaka, N.Matsuura, N.Nakajima
    • Journal Title

      Bioorg.Med.Chem. 13

      Pages: 2759-2771

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Synthetic Studies of Liposidomycin Degradation Product : Model Studies of Uracil Group Introduction

    • Author(s)
      Fukunishi, S., Ubukata, M., Nakajima, N.
    • Journal Title

      Heterocycles 73 (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Three Carbon-Heteroatom Bonds : Thio-, Seleno-, and Telluro-Carboxylic Acids and Derivatives ; Imidic Acids and Derivatives ; Ortho Acid Derivatives2005

    • Author(s)
      Nakajima, N., Ubukata, M.
    • Total Pages
      46
    • Publisher
      Thieme Chemistry
    • Related Report
      2005 Annual Research Report

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Published: 2004-04-01   Modified: 2016-04-21  

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