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A molecular base of epigenetic gene expression control in imprinted domain

Research Project

Project/Area Number 16590263
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Human genetics
Research InstitutionSaga University

Principal Investigator

SOEJIMA Hidenobu  Saga University, Faculty of Medicine, Research Associate, 医学部, 助手 (30304885)

Co-Investigator(Kenkyū-buntansha) HIGASHIMOTO Ken  Saga University, Faculty of Medicine, Research Associate, 医学部, 助手 (30346887)
白石 哲也  ソニーコンピュータサイエンス研究所, 研究員
Project Period (FY) 2004 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2005: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2004: ¥2,300,000 (Direct Cost: ¥2,300,000)
KeywordsGenomic imprinting / DNA methylation / Histone methylation / Beckwith-Wiedemann syndrome / cancer / Wilms tumor / ヒストンH3K9メチル化 / ヒストンH3K27トリメチル化
Research Abstract

Genetic imprinting is the mechanisms that lead to parent-specific differential expression of a subset of mammalian genes. Chromosomal region 11p15.5 is a well-known imprinted region. Imprinted genes in the region are regulated by an imprinting control region (ICR), where is epigenetically marked. The imprinting disruption of the region plays an important role in the pathogenesis of human disorders, such as Beckwith-Wiedemann syndrome (BWS) and cancer. We investigated the molecular mechanism of the imprinting and relevance to diseases.
1.Loss of DNA methylation at DMR-LIT1, an ICR of KIP2/LIT1 imprinted domain, was commonly associated with loss of histone H3K9 methylation in BWS patients. In cancer, an imprinted tumor suppressor KIP2 is regulated by DMR-LIT1, which is far from KIP2. Analyses of ES cells targeted Dnmt1 or G9a indicated that methylations of DNA and H3K9 are important for the maintenance of imprinting.
2.We have tried to isolate candidate for imprinting control molecules by screening with protein-chip (SELDI-TOF MS) between normal and BWS cells. However, any molecule has not yet been identified.
3.Only mono-methylation at H4K20 among all methylations at lysine residues of H3 and H4 was specifically present at paternal DMR-Lit1, suggesting a novel imprinting mark.
4.From a comprehensive analysis of thirty-seven sporadic Wilms tumors, genetic or epigenetic abnormality of 11p was critical for Wilms tumorigenesis.

Report

(3 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • Research Products

    (22 results)

All 2006 2005 2004

All Journal Article (20 results) Book (2 results)

  • [Journal Article] Imprinting disruption of the KIP2/LIT1 domain : the molecular mechanism causing Beckwith-Wiedemann syndrome and cancer.2006

    • Author(s)
      Higashimoto K
    • Journal Title

      Cytogenet Genome Res 113(1-4)

      Pages: 306-312

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Comparative analyses of genomic imprinting and CpG island-methylation in mouse Murrl and human MURR1 loci revealed a putative imprinting control region in mice.2006

    • Author(s)
      Zhang Z
    • Journal Title

      Gene 366・1

      Pages: 77-86

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Comparative analyses of genomic imprinting and CpG island-methylation in mouse Murr1 and human MURR1 loci revealed a putative imprinting control region in mice.2006

    • Author(s)
      Zhang Z
    • Journal Title

      Gene 336・1

      Pages: 77-86

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Imprinting, Chromatin Structure, and Disease.2005

    • Author(s)
      Soejima H
    • Journal Title

      J Cell Biochem 95・2

      Pages: 226-233

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] ZAC, LIT1 (KCNQ1OT1) and p57^<KIP2> (CDKN1C) are in an imprinted gene network that may play a role in Beckwith-Wiedemann syndrome.2005

    • Author(s)
      Arima T
    • Journal Title

      Nucleic Acids Res 33・8

      Pages: 2650-2660

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Neuron-specific relaxation of Igf2r imprinting is associated with neuron-specific modifications and lack of its antisense transcript Air.2005

    • Author(s)
      Yamasaki Y
    • Journal Title

      Hum Mol Genet 14・17

      Pages: 2511-2520

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] インプリンティングと先天異常、癌2005

    • Author(s)
      副島英伸
    • Journal Title

      Molecular Medicine 42・2

      Pages: 201-208

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Neuron-specific relaxation of Igf2r imprinting is associated with neuron-specific histone modifications and lack of its antisense transcript Air.2005

    • Author(s)
      Yamasaki Y
    • Journal Title

      Hum Mol Genet 14・17

      Pages: 2511-2520

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Genomic imprinting and congenital abnormality and cancer.2005

    • Author(s)
      Soejima H
    • Journal Title

      Molecular Medicine 42・2

      Pages: 201-208

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The Essential Role of Histone H3 Lys9 Methylation and MeCP2 Binding in MGMTSilencing with Poor DNA Methylation of the Promoter CpG Island.2005

    • Author(s)
      Zhao W
    • Journal Title

      J Biochem (Tokyo) 137・3

      Pages: 431-440

    • Related Report
      2005 Annual Research Report
  • [Journal Article] ZAC, LIT1 (KCNQ1OT1) and p57^<KIP2>(CDKN1C) are in an imprinted gene network that may play a role in Beckwith-Wiedemann syndrome.2005

    • Author(s)
      Arima T
    • Journal Title

      Nucleic Acids Res 33・8

      Pages: 2650-2660

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Epigenetic silencing of the MGMT gene in cancer.2005

    • Author(s)
      Soejima H
    • Journal Title

      Biochem Cell Biol 83・4

      Pages: 429-437

    • Related Report
      2005 Annual Research Report
  • [Journal Article] インプリンティングと先天異常、癌.2005

    • Author(s)
      副島英伸
    • Journal Title

      Molecular Medicine 42・2

      Pages: 201-208

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q2004

    • Author(s)
      Yamada Y
    • Journal Title

      Genome Research 14・2

      Pages: 247-266

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary 2004 Annual Research Report
  • [Journal Article] Silencing of imprinted CDKN1C gene expression is associated with loss of CpG and histone H3 lysine 9 methylation at DMR-LIT1 in esophageal cancer2004

    • Author(s)
      Soejima H
    • Journal Title

      Oncogene 23・25

      Pages: 4380-4388

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary 2004 Annual Research Report
  • [Journal Article] Beckwith-Wiedenmann症候群の分子遺伝学2004

    • Author(s)
      副島英伸
    • Journal Title

      細胞 36・7

      Pages: 278-281

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary 2004 Annual Research Report
  • [Journal Article] A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q.2004

    • Author(s)
      Yamada Y
    • Journal Title

      Genoma Res 14・2

      Pages: 247-266

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Silencing of imprinted CDKN1C gene expression is associated with loss of CpG and histone H3 lysine 9 methylation at DMR-LIT1 in esophageal cancer.2004

    • Author(s)
      Soejima H
    • Journal Title

      Oncogene 23・25

      Pages: 4380-4388

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Molecular genetics of Beckwith -Wiedenman syndrome.2004

    • Author(s)
      Soejima H
    • Journal Title

      The Cell 36・7

      Pages: 278-281

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Gene silencing in DNA damage repair2004

    • Author(s)
      Soejima H
    • Journal Title

      Cellular and Molecular Life Science 61・17

      Pages: 2168-2172

    • Related Report
      2004 Annual Research Report
  • [Book] エピジェネティクス(佐々木裕之編)2004

    • Author(s)
      副島英伸
    • Total Pages
      8
    • Publisher
      シュプリンガー・フェアラーク
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary 2004 Annual Research Report
  • [Book] Disruption of imprinting domain and diseases (Epigenetics)(Ed.Hiroyuki Sasaki)2004

    • Author(s)
      Soejima H
    • Total Pages
      8
    • Publisher
      Springer-Veglag
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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