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Development of cDNA array for diagnosis of sarcoma and its application to routine pathological diagnosis

Research Project

Project/Area Number 16590269
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Human pathology
Research InstitutionThe University of Tokyo

Principal Investigator

TAKAZAWA Yutaka  The University of Tokyo, The University of Tokyo Hospital, Project Lecturer (50313151)

Co-Investigator(Kenkyū-buntansha) MOTOI Toru  The University of Tokyo, Hospital, Project Lecturer (50291315)
鹿島 健司  東京大学, 医学部附属病院, 助手 (70292729)
大橋 健一  東京大学, 医学部附属病院, 助教授 (40231203)
西村 訓弘  株式会社ジェネティックラボ, 創薬研究部長(研究職)
Project Period (FY) 2004 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,810,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥210,000)
Fiscal Year 2007: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2006: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2005: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2004: ¥1,500,000 (Direct Cost: ¥1,500,000)
Keywordssarcoma / chimeric gene / patholoeical diagnosis / cDNA array / キメラ遣伝子
Research Abstract

Sarcoma is classified into numerous subtypes, reflecting the variety of mesenchymal tissue firm which they are originated. For this reason Pathological diagnosis of sarcoma is often difficult, combined with rarity of each subtype, despite many highly malignant subtypes are comprised in sarcoma On the other hand, correct pathological diagnosis is indispensable far appropriate clinical management of sarcoma Recently, reciprocal chromosomal translocation and formation of chimeric gene, which are highly specific to individual sarcoma subtypes, were found in many tumors. In order to improve the accuracy of pathological diagnosis of sarcoma, we developed a new method for molecular detection of chimeric genes using DIN array technology RNA was extracted from synovial sarcoma, clear cell sarcoma and Ewing sarcoma, followed by conversion to cDNA Each chimeric gene was amplified by multiplex PCR with mixture of primers of various chimeric genes, at the same time, SP6 promoter was inserted to PCR … More product Biotin-labeled cRNA was generated them PCR products by in vitro transcription using SP6 promoter; then it was hybridized to macroarray slides, a membrane-attached glass slides on which the probes corresponding to exons of each chimeric gene were spotted. Positive signals were visualized by alkaline phosphatase.
By this multiplex PCR-cDNA array method, correct chimeric genes and breakpoints were detected in most tumors. These results were validated by direct sequencing of PCR products of chimeric genes. Moreover, this method was applicable to routine pathological laboratory, because each procedure was simple and no special equipments was required except for a PCR machine. All the procedures are to be finished in about 3 days and resulted macroarray slides are able to store with other histopathological slides.
As for diagnostic aspects, this method might improve accuracy of pathological diagnosis of sarcoma, because it enables molecular pathological diagnosis independent from histopathological diagnosis. Less

Report

(5 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • Research Products

    (13 results)

All 2008 2006 2005 2004

All Journal Article (11 results) (of which Peer Reviewed: 1 results) Presentation (2 results)

  • [Journal Article] Tubulovillous adenoma developing after urinary reconstruction usingileal segments.2006

    • Author(s)
      Yamada Y., Fujimura T., Takahashi S., Takeuchi T., Takazawa Y., Kitamura T.
    • Journal Title

      International Journal of Urology 13(8)

      Pages: 1134-5

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Interobserver variability in histologic recognition, interpretation of KIT immunostaining, and determining MIB- 1 labeling indices in gastrointestinal stromal tumors and other spindle cell tumors of the gastrointestinal tract.2006

    • Author(s)
      Yamaguchi U., Hasegawa T., Sakurai S., Sakuma Y., Takazawa Y., Hishima T., Mitsuhashi T., Sekine S., Chuman H., Shimoda T.
    • Journal Title

      Applied Immunohistochemistry & Molecular Morphology 14(1)

      Pages: 46-51

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Spheroid Degenerationにおける蛋白糖化最終産物の局在2006

    • Author(s)
      加治優一, 天野史郎, 永井竜児, 高澤豊, 深山正久, 大鹿哲郎
    • Journal Title

      日本眼科学会雑誌 110

      Pages: 209-209

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 著明なB細胞浸潤を伴った皮膚T細胞リンパ腫の1例2006

    • Author(s)
      大松華子, 菅谷誠, 藤田英樹, 南谷洋策, 玉置邦彦, 伊豆津宏二, 高澤豊, 大田泰徳
    • Journal Title

      日本リンパ網内系学会会誌 46

      Pages: 90-90

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Gastrointestinal Stromal Tumors of Neurofibromatoasis Type I2005

    • Author(s)
      Takazawa Y
    • Journal Title

      Arn J Surg Pathol 29

      Pages: 755-763

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Pigmented neurofibroma: review of Japanese patients with an analysis of melanogenesis demonstrating coexpression of c-met protooncogene and microphthalimia-associated transcription factor2005

    • Author(s)
      Motoi T
    • Journal Title

      Hum Pathol 36

      Pages: 871-877

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Gastrointestinal Stromal Tumors of Neurofibromatoasis Type I2005

    • Author(s)
      Takazawa Y, et. al.
    • Journal Title

      Am J Surg Pathol 29

      Pages: 755-763

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] 軟部腫瘍,シリーズ最新医学講座・II-病理診断に律立つ分子病理学・92004

    • Author(s)
      元井 亨
    • Journal Title

      臨床検査 48

      Pages: 1059-1065

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Pigmented neurofibroma review of Japanese patients with An analysis of melanogenesis demonstrating coexpression of c-met proto-oncogene and microphthalimia-associated transcription factor2004

    • Author(s)
      Motoi T, et. al.
    • Journal Title

      Hum Pathol 36(8)

      Pages: 871-877

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Soft tissue tumors, series of up to date lecture of medicine II-Molecular pathology useful for pathlogical diagnosis 9(Japanese)2004

    • Journal Title

      Jounral of Medical Technology(Rinsho-kensa) 48

      Pages: 1059-1065

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] 病理診断に役立つ分子病理学・9 軟部腫瘍2004

    • Author(s)
      元井 亨
    • Journal Title

      臨床検査 48・9

      Pages: 1059-1065

    • Related Report
      2004 Annual Research Report
  • [Presentation] マクロアレイスライドを用いた軟部肉腫キメラ遺伝子検出法の開発2008

    • Author(s)
      元井 亨
    • Organizer
      第97回日本病理学会総会
    • Place of Presentation
      金沢
    • Year and Date
      2008-05-17
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] cDNAマクロアレイによる新規肉腫診断法の開発とEWS関連腫瘍への応用2004

    • Author(s)
      元井 亨
    • Organizer
      第93回に本病理学会総会
    • Place of Presentation
      札幌
    • Year and Date
      2004-06-10
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2004-04-01   Modified: 2016-04-21  

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